Wall clock time and date at job start Tue Mar 31 2020 11:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99601 * 2 1 4 4 H 1.48499 * 109.47111 * 270.00018 * 3 2 1 5 5 H 1.48500 * 109.47222 * 29.99752 * 3 2 1 6 6 H 1.48497 * 109.47463 * 149.99600 * 3 2 1 7 7 C 1.37868 * 120.00568 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99979 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00294 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47191 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46872 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00150 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99959 * 179.97438 * 11 10 9 14 14 C 1.39288 * 120.00217 * 183.03358 * 13 11 10 15 15 C 1.38856 * 120.16209 * 329.16430 * 14 13 11 16 16 C 1.38024 * 120.06561 * 179.97438 * 15 14 13 17 17 C 1.38559 * 120.40525 * 359.95631 * 16 15 14 18 18 C 1.37796 * 120.33097 * 0.04393 * 17 16 15 19 19 C 1.39682 * 119.92603 * 359.97438 * 18 17 16 20 20 C 1.47511 * 120.20104 * 179.97438 * 19 18 17 21 21 O 1.21591 * 120.00068 * 135.88288 * 20 19 18 22 22 N 1.34776 * 120.00004 * 315.87745 * 20 19 18 23 23 C 1.47019 * 125.65022 * 354.34361 * 22 20 19 24 24 C 1.54316 * 107.27741 * 180.96381 * 23 22 20 25 25 C 1.55160 * 102.86131 * 22.53005 * 24 23 22 26 26 C 1.47426 * 125.64632 * 174.64924 * 22 20 19 27 27 H 0.96994 * 120.00068 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47139 * 59.99393 * 9 7 2 29 29 H 1.09008 * 109.47081 * 299.99891 * 9 7 2 30 30 H 1.08994 * 109.47030 * 59.99696 * 10 9 7 31 31 H 1.08999 * 109.46861 * 299.99280 * 10 9 7 32 32 H 0.97005 * 119.99658 * 3.03581 * 13 11 10 33 33 H 1.07998 * 119.96573 * 359.97438 * 15 14 13 34 34 H 1.08003 * 119.79380 * 179.97438 * 16 15 14 35 35 H 1.08003 * 119.83025 * 180.02562 * 17 16 15 36 36 H 1.08005 * 120.03569 * 180.25186 * 18 17 16 37 37 H 1.08998 * 109.88460 * 300.51489 * 23 22 20 38 38 H 1.09002 * 109.88138 * 61.67972 * 23 22 20 39 39 H 1.08994 * 110.92638 * 264.10880 * 24 23 22 40 40 H 1.09003 * 110.58783 * 140.78452 * 24 23 22 41 41 H 1.08997 * 111.00376 * 206.22397 * 25 24 23 42 42 H 1.08996 * 111.03706 * 82.38726 * 25 24 23 43 43 H 1.08999 * 110.37095 * 274.67387 * 26 22 20 44 44 H 1.09001 * 110.36806 * 36.89316 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4405 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 1.4648 -2.1292 0.0014 9 6 3.5117 -1.1938 0.0011 10 6 4.0218 -2.6363 0.0010 11 6 5.5288 -2.6362 0.0009 12 8 6.1351 -1.5858 0.0015 13 7 6.2028 -3.8033 0.0014 14 6 7.5942 -3.8040 0.0651 15 6 8.3187 -2.7578 -0.4905 16 6 9.6974 -2.7603 -0.4257 17 6 10.3684 -3.8028 0.1931 18 6 9.6660 -4.8493 0.7500 19 6 8.2705 -4.8610 0.6920 20 6 7.5125 -5.9786 1.2856 21 8 6.5227 -5.7541 1.9552 22 7 7.9170 -7.2486 1.0857 23 6 9.0187 -7.6689 0.2076 24 6 9.0985 -9.2084 0.2772 25 6 7.6728 -9.6075 0.7416 26 6 7.3238 -8.4470 1.7066 27 1 -0.4850 0.8400 -0.0004 28 1 3.8747 -0.6797 0.8911 29 1 3.8753 -0.6802 -0.8889 30 1 3.6588 -3.1499 -0.8892 31 1 3.6582 -3.1503 0.8908 32 1 5.7188 -4.6428 -0.0428 33 1 7.8028 -1.9414 -0.9739 34 1 10.2565 -1.9446 -0.8598 35 1 11.4475 -3.7951 0.2388 36 1 10.1938 -5.6574 1.2347 37 1 8.8185 -7.3520 -0.8159 38 1 9.9561 -7.2350 0.5555 39 1 9.8446 -9.5270 1.0051 40 1 9.3148 -9.6258 -0.7062 41 1 7.6861 -10.5622 1.2673 42 1 6.9811 -9.6370 -0.1002 43 1 7.7648 -8.6238 2.6876 44 1 6.2430 -8.3345 1.7919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291074133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:37 Heat of formation + Delta-G solvation = -66.261780 kcal Electronic energy + Delta-G solvation = -25987.939371 eV Core-core repulsion = 22290.031892 eV Total energy + Delta-G solvation = -3697.907479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07602 -40.90973 -39.29115 -38.31546 -35.97298 -35.59889 -33.48224 -33.28125 -31.68824 -30.84978 -29.84370 -28.07393 -25.75557 -24.49076 -23.59757 -22.73763 -22.01366 -21.29243 -20.73952 -19.31460 -18.74625 -18.40047 -17.85899 -17.39467 -17.02717 -16.71641 -16.31045 -15.94399 -15.77759 -15.30761 -15.18838 -14.85561 -14.68940 -14.51796 -14.38081 -14.17325 -13.96027 -13.65989 -13.48330 -13.29734 -12.97879 -12.91814 -12.64403 -12.19575 -12.13733 -12.06481 -12.00969 -11.82171 -11.62849 -11.57133 -11.45822 -11.07309 -10.81567 -10.80880 -10.04842 -9.69313 -9.21490 -8.34292 -6.38302 -0.14983 0.28219 1.31621 1.33602 1.47377 1.49019 1.55596 1.88602 1.97408 2.32919 2.75713 3.00893 3.36108 3.64709 3.68335 3.76321 3.89673 4.07561 4.12357 4.23913 4.27121 4.35369 4.37501 4.40891 4.44840 4.49427 4.67576 4.81948 4.86373 4.90832 4.94590 5.01273 5.10638 5.14964 5.23731 5.26720 5.28828 5.36270 5.40335 5.40977 5.49785 5.56269 5.93118 6.16936 6.23158 6.37063 6.67127 6.95175 6.99181 7.26875 8.81612 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.003096 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.137822 B = 9040.887945 C =10346.471741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.047 0.953 9 C 0.009 3.991 10 C -0.115 4.115 11 C 0.519 3.481 12 O -0.550 6.550 13 N -0.661 5.661 14 C 0.175 3.825 15 C -0.158 4.158 16 C -0.074 4.074 17 C -0.133 4.133 18 C -0.062 4.062 19 C -0.177 4.177 20 C 0.570 3.430 21 O -0.577 6.577 22 N -0.612 5.612 23 C 0.086 3.914 24 C -0.123 4.123 25 C -0.126 4.126 26 C 0.093 3.907 27 H 0.268 0.732 28 H 0.011 0.989 29 H 0.017 0.983 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.417 0.583 33 H 0.126 0.874 34 H 0.153 0.847 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.856 -21.930 -1.631 36.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.065 0.935 9 C -0.029 4.029 10 C -0.155 4.155 11 C 0.309 3.691 12 O -0.427 6.427 13 N -0.304 5.304 14 C 0.078 3.922 15 C -0.179 4.179 16 C -0.092 4.092 17 C -0.151 4.151 18 C -0.081 4.081 19 C -0.183 4.183 20 C 0.360 3.640 21 O -0.457 6.457 22 N -0.345 5.345 23 C -0.035 4.035 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.029 4.029 27 H 0.077 0.923 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.254 0.746 33 H 0.144 0.856 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.177 0.823 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 28.496 -20.893 -1.262 35.358 hybrid contribution -0.973 0.659 0.153 1.185 sum 27.523 -20.235 -1.109 34.179 Atomic orbital electron populations 1.70027 1.07852 1.28232 1.52266 1.25831 0.95556 1.02998 0.94046 0.85774 0.79153 0.79121 0.79357 1.18880 1.20269 1.18606 1.21383 0.91121 0.93787 1.50793 0.93477 1.19210 0.94106 0.92847 0.96746 1.21523 0.88122 1.00824 1.05027 1.21392 0.91392 0.82681 0.73591 1.90600 1.70672 1.32431 1.49043 1.43456 1.05150 1.10056 1.71779 1.18015 0.82754 0.95569 0.95833 1.21446 0.95655 0.98832 1.01944 1.21583 0.92470 0.98924 0.96267 1.21461 1.01954 0.93069 0.98626 1.21455 0.90220 0.99555 0.96852 1.19656 0.95564 0.96842 1.06220 1.18089 0.83439 0.82511 0.80002 1.90828 1.27999 1.84746 1.42158 1.48520 1.35208 1.04739 1.45990 1.22526 0.89655 0.97242 0.94123 1.22685 0.97123 0.92036 1.04214 1.22787 0.97360 0.97471 0.98824 1.22459 0.98681 0.84115 0.97613 0.92259 0.97104 0.96440 0.87423 0.88615 0.74569 0.85606 0.82900 0.81284 0.82274 0.91109 0.89123 0.88783 0.88070 0.87635 0.90870 0.90567 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.51 13.96 21.44 0.30 -60.21 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.94 47.74 27.47 68.60 1.88 49.63 16 4 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.26 -13.22 6.54 99.48 0.65 -12.57 16 7 C -0.53 -32.00 9.66 25.60 0.25 -31.75 16 8 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 9 C 0.01 0.46 3.33 29.85 0.10 0.56 16 10 C -0.12 -4.85 5.64 29.85 0.17 -4.69 16 11 C 0.52 20.82 7.68 87.66 0.67 21.49 16 12 O -0.55 -25.01 13.20 -3.01 -0.04 -25.05 16 13 N -0.66 -22.17 4.68 -302.95 -1.42 -23.59 16 14 C 0.18 5.32 6.35 38.60 0.25 5.57 16 15 C -0.16 -4.57 8.71 22.37 0.19 -4.38 16 16 C -0.07 -1.45 10.03 22.30 0.22 -1.23 16 17 C -0.13 -1.90 10.02 22.24 0.22 -1.67 16 18 C -0.06 -1.03 8.41 22.51 0.19 -0.84 16 19 C -0.18 -4.41 5.41 -19.99 -0.11 -4.51 16 20 C 0.57 15.16 6.86 86.69 0.59 15.75 16 21 O -0.58 -20.58 16.03 -4.00 -0.06 -20.64 16 22 N -0.61 -11.07 3.33 -815.58 -2.71 -13.78 16 23 C 0.09 0.83 5.91 86.73 0.51 1.34 16 24 C -0.12 -0.55 6.95 31.78 0.22 -0.33 16 25 C -0.13 -0.96 7.08 31.99 0.23 -0.73 16 26 C 0.09 1.41 6.94 86.86 0.60 2.01 16 27 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 28 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 29 H 0.02 0.90 7.53 -2.38 -0.02 0.89 16 30 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 31 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 32 H 0.42 12.75 7.57 -92.70 -0.70 12.05 16 33 H 0.13 4.29 5.94 -2.91 -0.02 4.28 16 34 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.16 1.59 6.13 -2.91 -0.02 1.57 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.56 5.71 -2.39 -0.01 0.55 16 39 H 0.09 0.18 8.14 -2.39 -0.02 0.17 16 40 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.16 7.98 -2.39 -0.02 1.14 16 Total: -1.00 -82.66 359.41 2.99 -79.68 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.26 Total: 16.10 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 4.78 Total: -2.13 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -3.83 Total: -97.58 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.10 Total: -45.69 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.88 Total: 49.63 kcal Total: -82.66 2.99 -79.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291074133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.415 kcal (2) G-P(sol) polarization free energy of solvation -82.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds