Wall clock time and date at job start Tue Mar 31 2020 11:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99528 * 2 1 4 4 H 1.48493 * 109.47076 * 269.99660 * 3 2 1 5 5 H 1.48496 * 109.47426 * 30.00323 * 3 2 1 6 6 H 1.48502 * 109.46636 * 149.99963 * 3 2 1 7 7 C 1.37875 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00281 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47068 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.46898 * 179.97438 * 10 9 7 12 12 C 1.34770 * 119.99852 * 179.97438 * 11 10 9 13 13 O 1.21365 * 120.00329 * 359.97438 * 12 11 10 14 14 C 1.49360 * 120.00016 * 179.97438 * 12 11 10 15 15 O 1.21375 * 119.99619 * 0.02562 * 14 12 11 16 16 N 1.34775 * 119.99644 * 179.97438 * 14 12 11 17 17 C 1.39733 * 119.99391 * 185.27610 * 16 14 12 18 18 C 1.38950 * 120.07208 * 213.54742 * 17 16 14 19 19 C 1.38078 * 119.91994 * 180.25533 * 18 17 16 20 20 C 1.38320 * 120.07383 * 359.78956 * 19 18 17 21 21 C 1.38270 * 120.15407 * 359.97438 * 20 19 18 22 22 C 1.50695 * 119.96101 * 179.97438 * 21 20 19 23 23 C 1.53782 * 113.61468 * 39.15526 * 22 21 20 24 24 C 1.53955 * 87.02444 * 220.04868 * 23 22 21 25 25 C 1.53784 * 113.61430 * 301.55242 * 22 21 20 26 26 C 1.38120 * 120.07360 * 359.97438 * 21 20 19 27 27 H 0.97000 * 120.00405 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47092 * 59.99403 * 9 7 2 29 29 H 1.09005 * 109.47051 * 299.99984 * 9 7 2 30 30 H 1.08990 * 109.47490 * 60.00065 * 10 9 7 31 31 H 1.08999 * 109.46835 * 299.99486 * 10 9 7 32 32 H 0.97002 * 120.00176 * 359.97438 * 11 10 9 33 33 H 0.96997 * 120.00711 * 5.28198 * 16 14 12 34 34 H 1.07993 * 120.04345 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.96019 * 179.76973 * 19 18 17 36 36 H 1.08005 * 119.91772 * 179.97438 * 20 19 18 37 37 H 1.08997 * 112.85024 * 170.35403 * 22 21 20 38 38 H 1.09001 * 113.61617 * 334.56901 * 23 22 21 39 39 H 1.09005 * 113.61438 * 105.47290 * 23 22 21 40 40 H 1.08997 * 113.53927 * 270.81775 * 24 23 22 41 41 H 1.08995 * 113.74862 * 139.94227 * 24 23 22 42 42 H 1.09003 * 113.61240 * 254.52886 * 25 22 21 43 43 H 1.09003 * 113.61350 * 25.43020 * 25 22 21 44 44 H 1.07999 * 120.03306 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 2.1868 -6.0979 0.0031 13 8 3.4005 -6.0979 0.0027 14 6 1.4401 -7.3915 0.0043 15 8 0.2263 -7.3914 0.0042 16 7 2.1141 -8.5586 0.0044 17 6 1.4198 -9.7662 -0.1058 18 6 1.8875 -10.9003 0.5468 19 6 1.2019 -12.0932 0.4315 20 6 0.0483 -12.1590 -0.3290 21 6 -0.4225 -11.0312 -0.9757 22 6 -1.6794 -11.1080 -1.8035 23 6 -2.7736 -11.9916 -1.1816 24 6 -3.0589 -12.5016 -2.6060 25 6 -1.6038 -12.1365 -2.9442 26 6 0.2578 -9.8344 -0.8637 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8714 -3.6039 0.8922 31 1 2.8727 -3.6046 -0.8878 32 1 0.5429 -4.9309 0.0024 33 1 3.0810 -8.5603 0.0810 34 1 2.7882 -10.8496 1.1404 35 1 1.5669 -12.9760 0.9354 36 1 -0.4857 -13.0936 -0.4178 37 1 -2.0372 -10.1287 -2.1215 38 1 -2.3865 -12.7598 -0.5122 39 1 -3.5972 -11.4254 -0.7465 40 1 -3.7952 -11.9038 -3.1431 41 1 -3.2638 -13.5709 -2.6565 42 1 -1.4843 -11.6871 -3.9301 43 1 -0.8962 -12.9444 -2.7576 44 1 -0.1103 -8.9540 -1.3695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291710181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:58 Heat of formation + Delta-G solvation = -53.981978 kcal Electronic energy + Delta-G solvation = -24823.543230 eV Core-core repulsion = 21126.168243 eV Total energy + Delta-G solvation = -3697.374987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21442 -40.90573 -39.87242 -38.58501 -36.96911 -35.84246 -34.82455 -32.18942 -31.75619 -30.80444 -27.53636 -26.48505 -26.45361 -25.70407 -23.64815 -22.83751 -22.55572 -21.48929 -20.17596 -19.71018 -18.61904 -18.32965 -17.77749 -17.25193 -16.93904 -16.66029 -16.53022 -16.26097 -16.03007 -15.67170 -15.30979 -15.03223 -14.70311 -14.45659 -14.31898 -14.16240 -13.62016 -13.36273 -13.28713 -13.04213 -12.99957 -12.95928 -12.62239 -12.54311 -12.32675 -12.30956 -11.72292 -11.68656 -11.46513 -11.40098 -11.22917 -11.08133 -10.77864 -10.63376 -10.27369 -9.67889 -9.19532 -8.24869 -6.36201 -0.12193 0.40723 0.57228 1.16620 1.42723 1.43033 1.54574 1.97809 2.37488 2.55150 2.77874 3.10193 3.26585 3.68468 3.71369 3.87157 4.00122 4.10588 4.13550 4.24198 4.34817 4.40077 4.42397 4.46331 4.55391 4.78418 4.81658 4.87165 4.87820 5.00091 5.04888 5.10825 5.12149 5.19602 5.22435 5.30616 5.40239 5.50544 5.52393 5.54061 5.71957 5.75082 5.85774 6.03169 6.10594 6.25330 6.59263 6.75899 6.81388 7.33483 8.87176 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.002166 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.741599 B =12924.084316 C =13981.197322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.018 3.982 10 C 0.137 3.863 11 N -0.685 5.685 12 C 0.505 3.495 13 O -0.544 6.544 14 C 0.514 3.486 15 O -0.519 6.519 16 N -0.633 5.633 17 C 0.123 3.877 18 C -0.145 4.145 19 C -0.093 4.093 20 C -0.128 4.128 21 C -0.058 4.058 22 C -0.087 4.087 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.141 4.141 27 H 0.266 0.734 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.415 0.585 33 H 0.431 0.569 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 -30.267 -1.942 30.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.336 5.336 12 C 0.286 3.714 13 O -0.422 6.422 14 C 0.296 3.704 15 O -0.394 6.394 16 N -0.280 5.280 17 C 0.030 3.970 18 C -0.165 4.165 19 C -0.111 4.111 20 C -0.146 4.146 21 C -0.059 4.059 22 C -0.105 4.105 23 C -0.169 4.169 24 C -0.174 4.174 25 C -0.164 4.164 26 C -0.161 4.161 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.251 0.749 33 H 0.271 0.729 34 H 0.166 0.834 35 H 0.178 0.822 36 H 0.166 0.834 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.086 -30.061 -1.954 30.145 hybrid contribution 0.157 1.600 -0.019 1.608 sum -0.929 -28.462 -1.974 28.545 Atomic orbital electron populations 1.70077 1.07715 1.28056 1.50959 1.25932 0.95786 1.03340 0.94428 0.85393 0.78631 0.78206 0.78507 1.19774 1.20785 1.18713 1.21445 0.93792 0.91485 1.51545 0.91602 1.19183 0.94356 0.91932 0.96481 1.21525 0.95109 0.80490 1.01385 1.46066 1.11978 1.05394 1.70189 1.20004 0.87462 0.85310 0.78673 1.90738 1.13701 1.87720 1.50064 1.20170 0.87375 0.85460 0.77415 1.90784 1.13984 1.87511 1.47102 1.43068 1.12151 1.03109 1.69722 1.17970 0.94991 0.85401 0.98681 1.21211 1.02877 0.91925 1.00487 1.21328 0.94363 0.97671 0.97770 1.21296 0.97043 0.98447 0.97828 1.19790 0.96189 0.92480 0.97416 1.21634 0.92766 0.99286 0.96840 1.23092 0.97469 0.98939 0.97371 1.22843 0.96363 1.02098 0.96080 1.22994 0.97958 0.98112 0.97344 1.21053 0.96391 0.98670 1.00003 0.92561 0.97410 0.97394 0.91750 0.91784 0.74855 0.72917 0.83372 0.82211 0.83428 0.90049 0.88535 0.91761 0.90170 0.89844 0.91605 0.88896 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 2 C 0.00 0.21 5.46 84.65 0.46 0.68 16 3 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 0.91 5.09 29.85 0.15 1.06 16 10 C 0.14 5.71 5.61 86.38 0.48 6.20 16 11 N -0.69 -24.87 5.55 -464.51 -2.58 -27.45 16 12 C 0.51 17.11 7.89 87.24 0.69 17.79 16 13 O -0.54 -19.87 16.48 -3.29 -0.05 -19.93 16 14 C 0.51 15.53 7.62 87.24 0.67 16.20 16 15 O -0.52 -17.72 14.16 -3.33 -0.05 -17.76 16 16 N -0.63 -15.29 5.32 -304.83 -1.62 -16.91 16 17 C 0.12 2.81 6.28 38.21 0.24 3.05 16 18 C -0.15 -2.41 9.97 22.40 0.22 -2.19 16 19 C -0.09 -1.23 10.04 22.25 0.22 -1.00 16 20 C -0.13 -1.86 8.53 22.30 0.19 -1.67 16 21 C -0.06 -1.14 5.29 -19.89 -0.11 -1.25 16 22 C -0.09 -1.49 3.97 -11.01 -0.04 -1.53 16 23 C -0.13 -1.75 7.47 31.18 0.23 -1.51 16 24 C -0.14 -1.51 8.09 31.18 0.25 -1.26 16 25 C -0.13 -1.65 7.54 31.12 0.23 -1.42 16 26 C -0.14 -3.52 8.31 22.40 0.19 -3.34 16 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.41 14.54 7.94 -92.71 -0.74 13.81 16 33 H 0.43 8.65 8.30 -92.71 -0.77 7.88 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.15 1.37 6.72 -2.91 -0.02 1.35 16 37 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 38 H 0.10 1.03 6.39 -2.39 -0.02 1.02 16 39 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 1.03 7.64 -2.39 -0.02 1.01 16 44 H 0.11 3.23 6.40 -2.91 -0.02 3.21 16 Total: -1.00 -66.91 370.70 1.86 -65.05 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.47 Total: 26.17 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 4.32 Total: 0.10 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -3.92 Total: -98.98 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.10 Total: -37.69 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.91 1.86 -65.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291710181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.071 kcal (2) G-P(sol) polarization free energy of solvation -66.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds