Wall clock time and date at job start Tue Mar 31 2020 11:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 119.99982 * 2 1 4 4 H 1.48503 * 109.46875 * 272.60096 * 3 2 1 5 5 H 1.48506 * 109.47090 * 32.59860 * 3 2 1 6 6 H 1.48497 * 109.47473 * 152.60090 * 3 2 1 7 7 C 1.39901 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00044 * 347.76749 * 7 2 1 9 9 C 1.41153 * 120.00171 * 167.77043 * 7 2 1 10 10 C 1.40868 * 120.16412 * 328.77802 * 9 7 2 11 11 C 1.36371 * 119.82829 * 179.97438 * 10 9 7 12 12 C 1.39483 * 120.17087 * 359.97438 * 11 10 9 13 13 N 1.39237 * 119.83331 * 180.02562 * 12 11 10 14 14 C 1.34770 * 120.00181 * 35.48532 * 13 12 11 15 15 O 1.21282 * 120.00230 * 355.32816 * 14 13 12 16 16 C 1.50700 * 119.99899 * 175.33260 * 14 13 12 17 17 H 1.09005 * 109.46925 * 299.99455 * 16 14 13 18 18 C 1.52992 * 109.47397 * 59.99745 * 16 14 13 19 19 C 1.53007 * 109.47257 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.46926 * 300.00109 * 19 18 16 21 21 C 1.53005 * 109.47038 * 60.00037 * 20 19 18 22 22 H 1.08996 * 109.47561 * 60.00054 * 21 20 19 23 23 C 1.50705 * 109.46873 * 179.97438 * 21 20 19 24 24 N 1.34781 * 119.99590 * 299.99603 * 23 21 20 25 25 O 1.21277 * 120.00254 * 119.99727 * 23 21 20 26 26 C 1.52996 * 109.46952 * 299.99361 * 21 20 19 27 27 C 1.39474 * 120.33163 * 0.29765 * 12 11 10 28 28 C 1.36387 * 120.16961 * 359.44137 * 27 12 11 29 29 H 0.96999 * 119.99876 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.08710 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.91626 * 180.02562 * 11 10 9 32 32 H 0.97005 * 119.99408 * 215.48860 * 13 12 11 33 33 H 1.09004 * 109.47413 * 299.99627 * 18 16 14 34 34 H 1.09004 * 109.47266 * 60.00498 * 18 16 14 35 35 H 1.09005 * 109.47003 * 59.99749 * 19 18 16 36 36 H 1.08997 * 109.47378 * 180.02562 * 19 18 16 37 37 H 1.09000 * 109.47149 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47373 * 299.99462 * 20 19 18 39 39 H 0.96995 * 120.00161 * 0.02562 * 24 23 21 40 40 H 0.97007 * 119.99459 * 179.97438 * 24 23 21 41 41 H 1.08996 * 109.47553 * 300.00698 * 26 21 20 42 42 H 1.08997 * 109.47098 * 180.02562 * 26 21 20 43 43 H 1.08004 * 119.91865 * 179.72629 * 27 12 11 44 44 H 1.07991 * 120.08504 * 180.29695 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4352 2.0782 -1.3987 5 1 1.4687 2.6362 0.7543 6 1 3.5667 1.4250 0.6443 7 6 2.0083 -1.2116 0.0005 8 1 1.4867 -2.1362 0.1991 9 6 3.3958 -1.2255 -0.2584 10 6 3.9655 -0.2641 -1.1160 11 6 5.3069 -0.2836 -1.3610 12 6 6.1144 -1.2520 -0.7644 13 7 7.4832 -1.2651 -1.0190 14 6 8.1496 -0.1050 -1.1817 15 8 7.5442 0.9460 -1.1908 16 6 9.6468 -0.1135 -1.3523 17 1 10.1101 -0.5623 -0.4735 18 6 10.0140 -0.9279 -2.5943 19 6 11.5343 -0.9372 -2.7671 20 6 12.0376 0.4983 -2.9313 21 6 11.6704 1.3127 -1.6892 22 1 12.1332 0.8638 -0.8104 23 6 12.1667 2.7265 -1.8507 24 7 13.4829 2.9636 -2.0182 25 8 11.3819 3.6508 -1.8300 26 6 10.1502 1.3220 -1.5165 27 6 5.5567 -2.2106 0.0813 28 6 4.2177 -2.2006 0.3401 29 1 -0.4850 0.8400 0.0004 30 1 3.3417 0.4870 -1.5776 31 1 5.7453 0.4531 -2.0179 32 1 7.9572 -2.1093 -1.0794 33 1 9.6559 -1.9508 -2.4771 34 1 9.5509 -0.4792 -3.4731 35 1 11.9971 -1.3862 -1.8883 36 1 11.7958 -1.5170 -3.6522 37 1 13.1206 0.4918 -3.0540 38 1 11.5748 0.9473 -3.8101 39 1 14.1105 2.2243 -2.0351 40 1 13.8023 3.8736 -2.1225 41 1 9.6874 1.7709 -2.3953 42 1 9.8886 1.9025 -0.6319 43 1 6.1876 -2.9600 0.5362 44 1 3.7881 -2.9405 0.9990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344744713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:27 Heat of formation + Delta-G solvation = -78.132722 kcal Electronic energy + Delta-G solvation = -25935.099308 eV Core-core repulsion = 22236.677066 eV Total energy + Delta-G solvation = -3698.422242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.66824 -39.65012 -37.94812 -36.96716 -34.50054 -34.03362 -33.09269 -31.48919 -31.10271 -29.90613 -29.35056 -25.23268 -24.30665 -23.31377 -21.80285 -21.45513 -20.75805 -19.96517 -19.41143 -18.00022 -17.47311 -17.17453 -16.66850 -16.31618 -15.57443 -15.28807 -15.13433 -14.78432 -14.32320 -13.98091 -13.86808 -13.72044 -13.46085 -13.23401 -12.77023 -12.65716 -12.48344 -12.42982 -12.17813 -11.89650 -11.66872 -11.43658 -11.00373 -10.97902 -10.82352 -10.75312 -10.60220 -10.51778 -10.10854 -10.02363 -9.97683 -9.72945 -9.33293 -9.06181 -8.89917 -7.76014 -7.14425 -6.88626 -4.41065 2.38875 2.40620 2.73223 3.07373 3.17281 3.24734 3.31673 3.44529 3.63766 4.06882 4.30918 4.36666 4.39807 4.55504 4.76056 4.85323 4.91657 4.99259 5.05185 5.14089 5.26140 5.35999 5.45712 5.61358 5.66638 5.69511 5.83364 5.89552 5.93445 6.10905 6.18980 6.30710 6.46313 6.47556 6.71836 6.80063 6.92540 7.00205 7.19802 7.33200 7.52233 7.65762 7.90448 7.99620 8.07679 8.13995 8.37554 8.60807 8.76711 8.85012 10.13269 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.002953 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.894934 B = 9479.562123 C =10470.410414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.082 3.918 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.242 1.242 7 C -0.442 4.442 8 H 0.091 0.909 9 C 0.087 3.913 10 C -0.229 4.229 11 C -0.063 4.063 12 C -0.007 4.007 13 N -0.653 5.653 14 C 0.502 3.498 15 O -0.526 6.526 16 C -0.103 4.103 17 H 0.095 0.905 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.108 4.108 22 H 0.099 0.901 23 C 0.519 3.481 24 N -0.859 5.859 25 O -0.534 6.534 26 C -0.080 4.080 27 C -0.095 4.095 28 C -0.197 4.197 29 H 0.285 0.715 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.395 0.605 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.400 0.600 40 H 0.400 0.600 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.507 -2.112 -4.619 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.165 1.165 7 C -0.471 4.471 8 H 0.109 0.891 9 C 0.084 3.916 10 C -0.249 4.249 11 C -0.082 4.082 12 C -0.099 4.099 13 N -0.296 5.296 14 C 0.289 3.711 15 O -0.401 6.401 16 C -0.125 4.125 17 H 0.113 0.887 18 C -0.153 4.153 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.129 4.129 22 H 0.117 0.883 23 C 0.304 3.696 24 N -0.423 5.423 25 O -0.409 6.409 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.217 4.217 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.229 0.771 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.228 0.772 40 H 0.230 0.770 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 26.135 -0.782 -4.555 26.541 hybrid contribution 0.951 0.312 -0.016 1.000 sum 27.086 -0.470 -4.571 27.473 Atomic orbital electron populations 1.69672 1.07965 1.30217 1.35999 1.26158 0.94824 1.01716 0.90906 0.86311 0.81014 0.79504 0.79175 1.19674 1.22099 1.16494 1.19464 0.91355 0.95533 1.40739 0.89118 1.17809 0.93476 0.90964 0.89365 1.20747 0.94655 1.04244 1.05226 1.20468 0.92937 0.97054 0.97787 1.17133 0.81446 1.03907 1.07404 1.42970 1.07987 1.08057 1.70576 1.20516 0.89204 0.84012 0.77416 1.90718 1.69291 1.31106 1.49033 1.21322 0.92871 0.98211 1.00100 0.88664 1.21586 0.96255 0.99951 0.97464 1.21513 0.95402 0.95890 1.02383 1.21565 1.00735 0.95670 0.96958 1.21377 0.98660 0.92277 1.00587 0.88328 1.20711 0.82191 0.91693 0.75037 1.43919 1.08458 1.12478 1.77477 1.90797 1.55024 1.46095 1.48962 1.21135 0.91250 0.94519 1.04936 1.20189 0.95585 0.98300 0.97471 1.20606 0.92385 1.03777 1.04898 0.90461 0.87997 0.87029 0.77104 0.91100 0.91012 0.91392 0.91094 0.91497 0.91086 0.77215 0.77000 0.90237 0.90301 0.88583 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.33 13.93 55.55 0.77 -21.56 16 2 C 0.08 2.23 5.47 -17.34 -0.09 2.14 16 3 Si 0.91 22.43 24.39 -169.99 -4.15 18.28 16 4 H -0.27 -6.54 6.67 56.52 0.38 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.24 -6.24 6.67 56.52 0.38 -5.87 16 7 C -0.44 -12.20 9.59 -37.85 -0.36 -12.56 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.09 2.26 5.13 -106.80 -0.55 1.71 16 10 C -0.23 -5.87 6.93 -39.26 -0.27 -6.14 16 11 C -0.06 -1.49 8.61 -39.79 -0.34 -1.84 16 12 C -0.01 -0.14 6.30 -83.57 -0.53 -0.66 16 13 N -0.65 -10.52 5.23 -9.74 -0.05 -10.57 16 14 C 0.50 8.25 6.99 -10.99 -0.08 8.17 16 15 O -0.53 -11.30 13.41 5.56 0.07 -11.23 16 16 C -0.10 -1.13 2.53 -91.77 -0.23 -1.36 16 17 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.11 -0.95 5.10 -26.73 -0.14 -1.08 16 19 C -0.11 -0.63 5.92 -26.73 -0.16 -0.79 16 20 C -0.11 -0.66 5.10 -26.73 -0.14 -0.80 16 21 C -0.11 -0.87 2.53 -91.77 -0.23 -1.10 16 22 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 23 C 0.52 5.17 7.43 -10.98 -0.08 5.09 16 24 N -0.86 -4.69 8.77 31.22 0.27 -4.41 16 25 O -0.53 -8.25 16.82 5.56 0.09 -8.15 16 26 C -0.08 -0.97 3.07 -26.73 -0.08 -1.05 16 27 C -0.10 -1.95 9.90 -39.79 -0.39 -2.34 16 28 C -0.20 -4.55 9.74 -39.25 -0.38 -4.93 16 29 H 0.29 7.13 8.30 -40.82 -0.34 6.79 16 30 H 0.10 2.64 4.40 -52.48 -0.23 2.41 16 31 H 0.11 2.68 6.22 -52.48 -0.33 2.35 16 32 H 0.40 4.73 8.11 -40.82 -0.33 4.40 16 33 H 0.07 0.51 7.47 -51.93 -0.39 0.12 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.23 7.56 -51.93 -0.39 -0.16 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.40 0.87 8.25 -40.82 -0.34 0.53 16 40 H 0.40 1.94 8.93 -40.82 -0.36 1.58 16 41 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 42 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 43 H 0.10 1.62 8.06 -52.48 -0.42 1.19 16 44 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -35.09 351.69 -7.94 -43.03 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.20 Total: 6.85 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -4.06 Total: -17.55 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 1.00 Total: -36.54 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.17 Total: -19.38 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.15 Total: 18.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.09 -7.94 -43.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344744713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.105 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds