Wall clock time and date at job start Tue Mar 31 2020 11:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 119.99982 * 2 1 4 4 H 1.48503 * 109.46875 * 272.60096 * 3 2 1 5 5 H 1.48506 * 109.47090 * 32.59860 * 3 2 1 6 6 H 1.48497 * 109.47473 * 152.60090 * 3 2 1 7 7 C 1.39901 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00044 * 347.76749 * 7 2 1 9 9 C 1.41153 * 120.00171 * 167.77043 * 7 2 1 10 10 C 1.40868 * 120.16412 * 328.77802 * 9 7 2 11 11 C 1.36371 * 119.82829 * 179.97438 * 10 9 7 12 12 C 1.39483 * 120.17087 * 359.97438 * 11 10 9 13 13 N 1.39237 * 119.83331 * 180.02562 * 12 11 10 14 14 C 1.34770 * 120.00181 * 35.48532 * 13 12 11 15 15 O 1.21282 * 120.00230 * 355.32816 * 14 13 12 16 16 C 1.50700 * 119.99899 * 175.33260 * 14 13 12 17 17 H 1.09005 * 109.46925 * 299.99455 * 16 14 13 18 18 C 1.52992 * 109.47397 * 59.99745 * 16 14 13 19 19 C 1.53007 * 109.47257 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.46926 * 300.00109 * 19 18 16 21 21 C 1.53005 * 109.47038 * 60.00037 * 20 19 18 22 22 H 1.08996 * 109.47561 * 60.00054 * 21 20 19 23 23 C 1.50705 * 109.46873 * 179.97438 * 21 20 19 24 24 N 1.34781 * 119.99590 * 299.99603 * 23 21 20 25 25 O 1.21277 * 120.00254 * 119.99727 * 23 21 20 26 26 C 1.52996 * 109.46952 * 299.99361 * 21 20 19 27 27 C 1.39474 * 120.33163 * 0.29765 * 12 11 10 28 28 C 1.36387 * 120.16961 * 359.44137 * 27 12 11 29 29 H 0.96999 * 119.99876 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.08710 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.91626 * 180.02562 * 11 10 9 32 32 H 0.97005 * 119.99408 * 215.48860 * 13 12 11 33 33 H 1.09004 * 109.47413 * 299.99627 * 18 16 14 34 34 H 1.09004 * 109.47266 * 60.00498 * 18 16 14 35 35 H 1.09005 * 109.47003 * 59.99749 * 19 18 16 36 36 H 1.08997 * 109.47378 * 180.02562 * 19 18 16 37 37 H 1.09000 * 109.47149 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47373 * 299.99462 * 20 19 18 39 39 H 0.96995 * 120.00161 * 0.02562 * 24 23 21 40 40 H 0.97007 * 119.99459 * 179.97438 * 24 23 21 41 41 H 1.08996 * 109.47553 * 300.00698 * 26 21 20 42 42 H 1.08997 * 109.47098 * 180.02562 * 26 21 20 43 43 H 1.08004 * 119.91865 * 179.72629 * 27 12 11 44 44 H 1.07991 * 120.08504 * 180.29695 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4352 2.0782 -1.3987 5 1 1.4687 2.6362 0.7543 6 1 3.5667 1.4250 0.6443 7 6 2.0083 -1.2116 0.0005 8 1 1.4867 -2.1362 0.1991 9 6 3.3958 -1.2255 -0.2584 10 6 3.9655 -0.2641 -1.1160 11 6 5.3069 -0.2836 -1.3610 12 6 6.1144 -1.2520 -0.7644 13 7 7.4832 -1.2651 -1.0190 14 6 8.1496 -0.1050 -1.1817 15 8 7.5442 0.9460 -1.1908 16 6 9.6468 -0.1135 -1.3523 17 1 10.1101 -0.5623 -0.4735 18 6 10.0140 -0.9279 -2.5943 19 6 11.5343 -0.9372 -2.7671 20 6 12.0376 0.4983 -2.9313 21 6 11.6704 1.3127 -1.6892 22 1 12.1332 0.8638 -0.8104 23 6 12.1667 2.7265 -1.8507 24 7 13.4829 2.9636 -2.0182 25 8 11.3819 3.6508 -1.8300 26 6 10.1502 1.3220 -1.5165 27 6 5.5567 -2.2106 0.0813 28 6 4.2177 -2.2006 0.3401 29 1 -0.4850 0.8400 0.0004 30 1 3.3417 0.4870 -1.5776 31 1 5.7453 0.4531 -2.0179 32 1 7.9572 -2.1093 -1.0794 33 1 9.6559 -1.9508 -2.4771 34 1 9.5509 -0.4792 -3.4731 35 1 11.9971 -1.3862 -1.8883 36 1 11.7958 -1.5170 -3.6522 37 1 13.1206 0.4918 -3.0540 38 1 11.5748 0.9473 -3.8101 39 1 14.1105 2.2243 -2.0351 40 1 13.8023 3.8736 -2.1225 41 1 9.6874 1.7709 -2.3953 42 1 9.8886 1.9025 -0.6319 43 1 6.1876 -2.9600 0.5362 44 1 3.7881 -2.9405 0.9990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344744713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:26 Heat of formation + Delta-G solvation = -105.434787 kcal Electronic energy + Delta-G solvation = -25936.283214 eV Core-core repulsion = 22236.677066 eV Total energy + Delta-G solvation = -3699.606148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74077 -40.79445 -39.45716 -38.06703 -36.21667 -34.96238 -34.73228 -32.45943 -31.83233 -31.71742 -31.02400 -26.92085 -25.02801 -24.50166 -23.64063 -22.60598 -21.92985 -20.87200 -20.57140 -19.46266 -18.95084 -18.38130 -17.61636 -17.52678 -17.13118 -16.43401 -16.16534 -15.72203 -15.66286 -15.48412 -15.21967 -14.86553 -14.69624 -14.46934 -14.42216 -14.17976 -13.87927 -13.76376 -13.41584 -13.21301 -12.78780 -12.72689 -12.36496 -12.35706 -12.19060 -12.04296 -11.73136 -11.66723 -11.59293 -11.36226 -11.06316 -10.87411 -10.79582 -10.63557 -10.48431 -9.62355 -8.96997 -8.91696 -6.46186 0.60210 0.83640 1.20191 1.30260 1.41057 1.64696 1.72767 2.05931 2.25044 2.59883 2.65849 3.47015 3.54357 3.72345 3.74762 3.93783 4.15149 4.20392 4.31524 4.33180 4.33945 4.43330 4.45303 4.59307 4.65362 4.69343 4.93461 4.95343 5.08403 5.10113 5.12422 5.15278 5.24863 5.26730 5.31699 5.36049 5.52424 5.55065 5.69094 5.84869 5.91431 5.91881 6.20640 6.37113 6.49860 6.66773 6.70615 6.82111 7.38817 7.40040 8.15942 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.002953 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.894934 B = 9479.562123 C =10470.410414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.053 3.947 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.474 4.474 8 H 0.068 0.932 9 C 0.063 3.937 10 C -0.242 4.242 11 C -0.087 4.087 12 C 0.022 3.978 13 N -0.641 5.641 14 C 0.497 3.503 15 O -0.582 6.582 16 C -0.088 4.088 17 H 0.135 0.865 18 C -0.114 4.114 19 C -0.106 4.106 20 C -0.109 4.109 21 C -0.098 4.098 22 H 0.135 0.865 23 C 0.512 3.488 24 N -0.834 5.834 25 O -0.603 6.603 26 C -0.079 4.079 27 C -0.087 4.087 28 C -0.196 4.196 29 H 0.292 0.708 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.422 0.578 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.420 0.580 40 H 0.405 0.595 41 H 0.039 0.961 42 H 0.042 0.958 43 H 0.150 0.850 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.920 -4.684 -4.343 33.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.161 4.161 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.504 4.504 8 H 0.086 0.914 9 C 0.060 3.940 10 C -0.262 4.262 11 C -0.107 4.107 12 C -0.071 4.071 13 N -0.287 5.287 14 C 0.286 3.714 15 O -0.461 6.461 16 C -0.109 4.109 17 H 0.153 0.847 18 C -0.152 4.152 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.119 4.119 22 H 0.153 0.847 23 C 0.298 3.702 24 N -0.398 5.398 25 O -0.484 6.484 26 C -0.118 4.118 27 C -0.106 4.106 28 C -0.216 4.216 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.261 0.739 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.252 0.748 40 H 0.236 0.764 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.168 0.832 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 31.645 -3.415 -4.295 32.117 hybrid contribution -0.395 1.058 -0.159 1.140 sum 31.251 -2.357 -4.453 31.654 Atomic orbital electron populations 1.69682 1.08509 1.31072 1.38569 1.26563 0.95286 1.03284 0.90939 0.85617 0.79086 0.77965 0.78841 1.19890 1.20270 1.18890 1.19445 0.92451 0.94997 1.43499 0.91360 1.17960 0.93335 0.92390 0.90307 1.20768 0.95438 1.04300 1.05705 1.20567 0.92774 0.98431 0.98902 1.17344 0.83532 1.01668 1.04602 1.42915 1.06011 1.09664 1.70109 1.21665 0.91615 0.82893 0.75225 1.90715 1.71011 1.33315 1.51087 1.21349 0.88159 0.98073 1.03282 0.84726 1.21655 0.98830 0.99985 0.94741 1.21524 0.92692 0.95546 1.04589 1.21620 1.02914 0.95508 0.94635 1.21360 0.95372 0.91728 1.03401 0.84714 1.21145 0.82966 0.91876 0.74188 1.43710 1.07264 1.13718 1.75080 1.90779 1.57029 1.48103 1.52451 1.21026 0.94563 0.94712 1.01475 1.20604 0.95015 0.98707 0.96317 1.20922 0.93494 1.02871 1.04305 0.89710 0.89401 0.87930 0.73884 0.89023 0.93341 0.88502 0.89317 0.87789 0.93201 0.74759 0.76442 0.94204 0.93861 0.83229 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.74 13.93 21.82 0.30 -48.44 16 2 C 0.05 3.03 5.47 85.24 0.47 3.50 16 3 Si 0.96 48.44 24.39 68.60 1.67 50.11 16 4 H -0.27 -13.62 6.67 99.48 0.66 -12.96 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -14.15 6.67 99.48 0.66 -13.48 16 7 C -0.47 -27.35 9.59 23.39 0.22 -27.13 16 8 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 9 C 0.06 3.33 5.13 -21.28 -0.11 3.22 16 10 C -0.24 -12.81 6.93 22.48 0.16 -12.65 16 11 C -0.09 -4.18 8.61 22.13 0.19 -3.99 16 12 C 0.02 0.89 6.30 38.56 0.24 1.13 16 13 N -0.64 -18.51 5.23 -303.12 -1.58 -20.10 16 14 C 0.50 15.56 6.99 87.66 0.61 16.17 16 15 O -0.58 -25.65 13.41 -3.04 -0.04 -25.69 16 16 C -0.09 -1.65 2.53 -11.54 -0.03 -1.68 16 17 H 0.14 1.58 8.14 -2.38 -0.02 1.56 16 18 C -0.11 -1.42 5.10 30.59 0.16 -1.27 16 19 C -0.11 -0.56 5.92 30.60 0.18 -0.38 16 20 C -0.11 -0.83 5.10 30.60 0.16 -0.67 16 21 C -0.10 -1.30 2.53 -11.54 -0.03 -1.32 16 22 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 23 C 0.51 9.59 7.43 87.66 0.65 10.24 16 24 N -0.83 -6.78 8.77 -173.53 -1.52 -8.31 16 25 O -0.60 -19.45 16.82 -3.02 -0.05 -19.50 16 26 C -0.08 -1.89 3.07 30.60 0.09 -1.80 16 27 C -0.09 -3.23 9.90 22.14 0.22 -3.02 16 28 C -0.20 -8.80 9.74 22.48 0.22 -8.58 16 29 H 0.29 15.22 8.30 -92.71 -0.77 14.45 16 30 H 0.09 4.80 4.40 -2.91 -0.01 4.78 16 31 H 0.10 5.11 6.22 -2.91 -0.02 5.10 16 32 H 0.42 7.80 8.11 -92.70 -0.75 7.05 16 33 H 0.09 0.80 7.47 -2.39 -0.02 0.78 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.07 8.14 -2.38 -0.02 0.05 16 36 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.10 0.08 7.56 -2.39 -0.02 0.06 16 38 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.42 -0.08 8.25 -92.71 -0.76 -0.84 16 40 H 0.40 3.09 8.93 -92.70 -0.83 2.26 16 41 H 0.04 1.24 8.06 -2.39 -0.02 1.22 16 42 H 0.04 1.31 8.06 -2.39 -0.02 1.30 16 43 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 44 H 0.12 4.95 8.06 -2.92 -0.02 4.93 16 Total: -1.00 -86.26 351.69 0.81 -85.45 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -1.37 Total: 14.67 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 3.40 Total: -28.20 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -2.80 Total: -76.84 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.09 Total: -45.18 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.67 Total: 50.11 kcal Total: -86.26 0.81 -85.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344744713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.988 kcal (2) G-P(sol) polarization free energy of solvation -86.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds