Wall clock time and date at job start Tue Mar 31 2020 11:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99559 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47038 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00050 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00369 * 179.97438 * 16 15 14 19 19 C 1.46499 * 120.00014 * 180.02562 * 18 16 15 20 20 C 1.53002 * 117.49575 * 223.61889 * 19 18 16 21 21 C 1.53002 * 60.00196 * 252.51004 * 20 19 18 22 22 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 23 23 C 1.38237 * 120.00118 * 54.45011 * 22 9 7 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 9 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 234.71903 * 22 9 7 28 28 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 29 29 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 30 30 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 31 31 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 32 32 H 1.08998 * 109.46870 * 299.99113 * 15 14 12 33 33 H 1.08995 * 109.47556 * 59.99876 * 15 14 12 34 34 H 0.96995 * 119.99567 * 359.97438 * 18 16 15 35 35 H 1.08996 * 115.55340 * 9.32563 * 19 18 16 36 36 H 1.09003 * 117.50225 * 359.97438 * 20 19 18 37 37 H 1.08999 * 117.50126 * 145.01922 * 20 19 18 38 38 H 1.08994 * 117.49871 * 252.51112 * 21 20 19 39 39 H 1.09002 * 117.51733 * 107.47656 * 21 20 19 40 40 H 1.08005 * 119.99967 * 359.97438 * 23 22 9 41 41 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 42 42 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 43 43 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00249 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 6 3.6614 -3.5344 4.2917 16 6 4.5716 -4.5688 4.9022 17 8 4.9102 -5.5366 4.2545 18 7 5.0094 -4.4184 6.1680 19 6 5.8946 -5.4237 6.7612 20 6 5.6016 -5.8639 8.1969 21 6 6.8105 -4.9739 7.9013 22 6 0.8003 -2.9670 -1.2150 23 6 1.7146 -3.1134 -2.2414 24 6 1.2947 -3.5503 -3.4839 25 6 -0.0409 -3.8321 -3.7025 26 6 -0.9560 -3.6808 -2.6775 27 6 -0.5353 -3.2480 -1.4338 28 1 -0.4851 -0.8361 -0.0817 29 1 1.6797 -4.5125 0.7692 30 1 3.0976 -3.6172 0.1724 31 1 3.6919 -4.7442 2.5471 32 1 4.1640 -2.5672 4.2836 33 1 2.7465 -3.4636 4.8799 34 1 4.7389 -3.6442 6.6859 35 1 6.2802 -6.1756 6.0727 36 1 4.7504 -5.4053 8.7003 37 1 5.7942 -6.9057 8.4532 38 1 7.7984 -5.4302 7.9631 39 1 6.7547 -3.9299 8.2097 40 1 2.7574 -2.8893 -2.0718 41 1 2.0097 -3.6688 -4.2846 42 1 -0.3693 -4.1709 -4.6739 43 1 -1.9993 -3.9013 -2.8481 44 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353689273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:42 Heat of formation + Delta-G solvation = -28.715324 kcal Electronic energy + Delta-G solvation = -25398.074033 eV Core-core repulsion = 21701.794691 eV Total energy + Delta-G solvation = -3696.279342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.25349 -39.04038 -38.24976 -37.38683 -34.47721 -33.79755 -33.19424 -31.32898 -30.09106 -29.33301 -27.57910 -24.82731 -22.97306 -22.82089 -22.25209 -21.64116 -20.96039 -20.24851 -19.57559 -17.64318 -17.05437 -16.73273 -16.16402 -15.82746 -15.65415 -15.47038 -14.81123 -14.61476 -14.18520 -14.00831 -13.73070 -13.62921 -13.13842 -13.08609 -12.82846 -12.59253 -12.33651 -12.16568 -12.02162 -11.83483 -11.72539 -11.44260 -10.96031 -10.89247 -10.71285 -10.41373 -10.22186 -10.09414 -10.03087 -9.67045 -9.16466 -9.11890 -8.73125 -8.60093 -8.27377 -8.11696 -7.62129 -6.21229 -3.90091 2.21228 2.25504 2.26315 2.60145 3.42044 3.49887 3.51007 3.55395 3.70334 3.71919 4.33257 4.41582 4.52246 4.56813 4.62302 4.69569 5.19443 5.30108 5.34355 5.36819 5.46655 5.50929 5.61686 5.63409 5.65566 5.73966 5.78833 6.03088 6.10614 6.11193 6.19215 6.34033 6.44454 6.66197 6.73132 6.80911 6.94813 7.11048 7.22606 7.24817 7.39843 7.74652 7.84553 7.87814 8.00692 8.24466 8.53019 8.94297 8.99273 9.78805 11.18210 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002977 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.516573 B = 9404.553917 C =10740.055047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.032 3.968 3 Si 1.061 2.939 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.568 4.568 8 H 0.045 0.955 9 C 0.073 3.927 10 H 0.050 0.950 11 C -0.115 4.115 12 C 0.517 3.483 13 O -0.500 6.500 14 N -0.739 5.739 15 C 0.104 3.896 16 C 0.517 3.483 17 O -0.534 6.534 18 N -0.702 5.702 19 C 0.079 3.921 20 C -0.194 4.194 21 C -0.189 4.189 22 C -0.033 4.033 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.271 0.729 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.405 0.595 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.405 0.595 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.006 -11.259 10.596 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.174 4.174 3 Si 0.890 3.110 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.605 4.605 8 H 0.064 0.936 9 C 0.054 3.946 10 H 0.068 0.932 11 C -0.155 4.155 12 C 0.304 3.696 13 O -0.371 6.371 14 N -0.398 5.398 15 C -0.024 4.024 16 C 0.304 3.696 17 O -0.410 6.410 18 N -0.353 5.353 19 C -0.027 4.027 20 C -0.232 4.232 21 C -0.228 4.228 22 C -0.034 4.034 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.170 4.170 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.242 0.758 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.240 0.760 35 H 0.156 0.844 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.682 -9.512 10.512 16.624 hybrid contribution 0.342 -1.547 0.080 1.586 sum 9.024 -11.059 10.592 17.775 Atomic orbital electron populations 1.70730 1.06936 1.31022 1.45478 1.25572 0.96401 1.02183 0.93207 0.83678 0.75094 0.76018 0.76224 1.20962 1.21555 1.21741 1.21547 0.93776 0.90695 1.54532 0.93639 1.17868 0.95598 0.92912 0.88228 0.93194 1.21656 1.01949 1.00094 0.91802 1.20906 0.77489 0.83206 0.88034 1.90751 1.50840 1.23230 1.72324 1.45964 1.53159 1.28212 1.12450 1.20903 0.98735 0.96715 0.86008 1.20791 0.80493 0.87097 0.81264 1.90686 1.57691 1.31615 1.61056 1.45305 1.49851 1.25818 1.14332 1.21610 0.96038 0.94991 0.90015 1.23440 0.99873 1.00942 0.98963 1.23392 0.95975 1.00813 1.02588 1.20843 0.92522 0.91254 0.98800 1.20934 0.99940 0.99065 0.92465 1.21019 0.95590 1.01145 0.97072 1.20826 0.93759 1.04088 0.98350 1.20962 0.98506 1.01040 0.93795 1.21071 0.96138 1.00760 0.96835 0.91772 0.91401 0.90041 0.75839 0.88543 0.88733 0.75969 0.84378 0.88366 0.87931 0.87803 0.88305 0.86648 0.87441 0.87590 0.87457 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.63 13.56 55.43 0.75 -26.87 16 2 C 0.03 0.92 5.45 -17.83 -0.10 0.82 16 3 Si 1.06 26.12 29.91 -169.99 -5.08 21.04 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.57 -15.46 6.35 -34.44 -0.22 -15.67 16 8 H 0.05 1.24 7.82 -52.48 -0.41 0.83 16 9 C 0.07 1.76 1.23 -92.92 -0.11 1.64 16 10 H 0.05 1.35 6.59 -51.93 -0.34 1.01 16 11 C -0.11 -2.27 4.95 -27.88 -0.14 -2.41 16 12 C 0.52 10.34 7.58 -10.99 -0.08 10.25 16 13 O -0.50 -12.19 15.02 5.55 0.08 -12.10 16 14 N -0.74 -11.61 5.53 -61.47 -0.34 -11.95 16 15 C 0.10 1.34 6.15 -5.19 -0.03 1.31 16 16 C 0.52 6.13 7.90 -10.99 -0.09 6.04 16 17 O -0.53 -7.97 15.23 5.55 0.08 -7.89 16 18 N -0.70 -6.05 5.57 -53.80 -0.30 -6.35 16 19 C 0.08 0.64 6.43 -67.93 -0.44 0.20 16 20 C -0.19 -1.18 10.46 -26.73 -0.28 -1.46 16 21 C -0.19 -1.10 10.46 -26.73 -0.28 -1.38 16 22 C -0.03 -0.75 4.53 -104.62 -0.47 -1.22 16 23 C -0.11 -2.19 8.90 -39.58 -0.35 -2.55 16 24 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 25 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 26 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 27 C -0.13 -2.73 9.18 -39.58 -0.36 -3.09 16 28 H 0.27 8.13 6.24 -40.82 -0.25 7.88 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.52 7.97 -51.93 -0.41 1.10 16 31 H 0.41 5.90 7.44 -40.82 -0.30 5.60 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.41 2.46 8.83 -40.82 -0.36 2.10 16 35 H 0.14 1.30 7.40 -51.93 -0.38 0.91 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.12 2.34 7.85 -52.48 -0.41 1.93 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.11 2.28 7.95 -52.49 -0.42 1.86 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -34.95 375.09 -9.62 -44.57 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.32 Total: 9.98 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -4.15 Total: -16.08 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.11 Total: -45.18 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.17 Total: -19.99 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -5.08 Total: 21.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.95 -9.62 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353689273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.859 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds