Wall clock time and date at job start Tue Mar 31 2020 11:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99559 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47038 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00050 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00369 * 179.97438 * 16 15 14 19 19 C 1.46499 * 120.00014 * 180.02562 * 18 16 15 20 20 C 1.53002 * 117.49575 * 223.61889 * 19 18 16 21 21 C 1.53002 * 60.00196 * 252.51004 * 20 19 18 22 22 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 23 23 C 1.38237 * 120.00118 * 54.45011 * 22 9 7 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 9 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 234.71903 * 22 9 7 28 28 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 29 29 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 30 30 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 31 31 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 32 32 H 1.08998 * 109.46870 * 299.99113 * 15 14 12 33 33 H 1.08995 * 109.47556 * 59.99876 * 15 14 12 34 34 H 0.96995 * 119.99567 * 359.97438 * 18 16 15 35 35 H 1.08996 * 115.55340 * 9.32563 * 19 18 16 36 36 H 1.09003 * 117.50225 * 359.97438 * 20 19 18 37 37 H 1.08999 * 117.50126 * 145.01922 * 20 19 18 38 38 H 1.08994 * 117.49871 * 252.51112 * 21 20 19 39 39 H 1.09002 * 117.51733 * 107.47656 * 21 20 19 40 40 H 1.08005 * 119.99967 * 359.97438 * 23 22 9 41 41 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 42 42 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 43 43 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00249 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 6 3.6614 -3.5344 4.2917 16 6 4.5716 -4.5688 4.9022 17 8 4.9102 -5.5366 4.2545 18 7 5.0094 -4.4184 6.1680 19 6 5.8946 -5.4237 6.7612 20 6 5.6016 -5.8639 8.1969 21 6 6.8105 -4.9739 7.9013 22 6 0.8003 -2.9670 -1.2150 23 6 1.7146 -3.1134 -2.2414 24 6 1.2947 -3.5503 -3.4839 25 6 -0.0409 -3.8321 -3.7025 26 6 -0.9560 -3.6808 -2.6775 27 6 -0.5353 -3.2480 -1.4338 28 1 -0.4851 -0.8361 -0.0817 29 1 1.6797 -4.5125 0.7692 30 1 3.0976 -3.6172 0.1724 31 1 3.6919 -4.7442 2.5471 32 1 4.1640 -2.5672 4.2836 33 1 2.7465 -3.4636 4.8799 34 1 4.7389 -3.6442 6.6859 35 1 6.2802 -6.1756 6.0727 36 1 4.7504 -5.4053 8.7003 37 1 5.7942 -6.9057 8.4532 38 1 7.7984 -5.4302 7.9631 39 1 6.7547 -3.9299 8.2097 40 1 2.7574 -2.8893 -2.0718 41 1 2.0097 -3.6688 -4.2846 42 1 -0.3693 -4.1709 -4.6739 43 1 -1.9993 -3.9013 -2.8481 44 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353689273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:41 Heat of formation + Delta-G solvation = -52.268342 kcal Electronic energy + Delta-G solvation = -25399.095369 eV Core-core repulsion = 21701.794691 eV Total energy + Delta-G solvation = -3697.300678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32181 -40.51182 -39.74163 -38.13667 -36.20600 -35.30318 -34.02521 -33.27262 -31.60709 -30.80885 -28.90557 -26.69830 -24.65497 -23.29010 -23.24342 -23.02384 -21.89410 -21.72546 -21.19540 -19.04644 -18.51021 -17.88493 -17.61643 -17.01500 -16.96084 -16.63902 -16.22080 -15.70642 -15.63262 -15.50341 -15.39632 -14.92845 -14.65542 -14.25117 -14.04765 -14.00468 -13.75598 -13.67623 -13.45164 -13.14202 -12.65400 -12.60539 -12.53817 -12.38477 -12.06698 -11.94099 -11.72248 -11.51870 -11.50126 -11.18540 -10.83963 -10.58348 -10.37051 -10.14560 -9.83245 -9.63848 -9.26961 -8.42841 -6.09963 0.68126 0.73809 1.31661 1.50523 1.60191 1.69337 1.76630 1.82774 2.45137 2.64189 2.95376 3.11244 3.37580 3.50412 3.77892 4.02560 4.04748 4.05838 4.13847 4.27284 4.28343 4.30411 4.36493 4.44475 4.48931 4.63177 4.74140 4.76110 4.83050 4.86871 5.01183 5.07514 5.19668 5.23538 5.36706 5.40537 5.41335 5.44648 5.74857 5.82322 5.95848 6.24831 6.31175 6.31788 6.41310 6.59392 6.79448 6.99593 7.41343 7.65447 8.97335 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002977 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.516573 B = 9404.553917 C =10740.055047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.024 4.024 3 Si 1.098 2.902 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.039 0.961 9 C 0.076 3.924 10 H 0.008 0.992 11 C -0.112 4.112 12 C 0.518 3.482 13 O -0.552 6.552 14 N -0.723 5.723 15 C 0.101 3.899 16 C 0.522 3.478 17 O -0.569 6.569 18 N -0.685 5.685 19 C 0.050 3.950 20 C -0.183 4.183 21 C -0.172 4.172 22 C -0.058 4.058 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.152 4.152 28 H 0.261 0.739 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.413 0.587 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.419 0.581 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.136 0.864 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.367 -12.384 10.107 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.222 4.222 3 Si 0.923 3.077 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.598 4.598 8 H 0.057 0.943 9 C 0.057 3.943 10 H 0.026 0.974 11 C -0.152 4.152 12 C 0.305 3.695 13 O -0.428 6.428 14 N -0.381 5.381 15 C -0.026 4.026 16 C 0.309 3.691 17 O -0.448 6.448 18 N -0.336 5.336 19 C -0.056 4.056 20 C -0.222 4.222 21 C -0.210 4.210 22 C -0.059 4.059 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.170 4.170 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.251 0.749 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.256 0.744 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.095 -10.679 10.069 17.814 hybrid contribution -0.049 -1.344 0.271 1.372 sum 10.046 -12.023 10.339 18.772 Atomic orbital electron populations 1.70815 1.07891 1.30474 1.48869 1.26746 0.96577 1.05574 0.93328 0.83188 0.74404 0.72895 0.77247 1.21444 1.20850 1.19496 1.21800 0.93484 0.92133 1.52351 0.94257 1.17681 0.94418 0.93127 0.89086 0.97402 1.21574 1.01872 0.99875 0.91862 1.20898 0.77479 0.82779 0.88295 1.90731 1.53151 1.25563 1.73367 1.45732 1.51422 1.27544 1.13364 1.21057 0.99659 0.97349 0.84529 1.20494 0.80259 0.86240 0.82092 1.90674 1.59145 1.32831 1.62151 1.45158 1.48931 1.26283 1.13220 1.21696 0.97741 0.95425 0.90728 1.23513 1.00297 1.01692 0.96648 1.23483 0.96220 1.01491 0.99845 1.20651 0.93578 0.93527 0.98104 1.21016 0.99573 1.00167 0.93342 1.21407 0.96844 0.99406 0.96706 1.21310 0.93138 1.02156 0.99584 1.21306 1.00398 0.99807 0.92782 1.21139 0.95575 1.02208 0.98105 0.92893 0.89056 0.88682 0.74913 0.88079 0.87784 0.74366 0.86122 0.87665 0.87132 0.86771 0.87232 0.86913 0.84033 0.83554 0.84625 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.88 13.56 21.44 0.29 -59.59 16 2 C -0.02 -1.41 5.45 84.65 0.46 -0.95 16 3 Si 1.10 53.60 29.91 68.60 2.05 55.65 16 4 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.56 -31.36 6.35 25.60 0.16 -31.20 16 8 H 0.04 2.19 7.82 -2.91 -0.02 2.16 16 9 C 0.08 3.80 1.23 -12.28 -0.02 3.79 16 10 H 0.01 0.45 6.59 -2.39 -0.02 0.43 16 11 C -0.11 -4.50 4.95 29.85 0.15 -4.35 16 12 C 0.52 21.20 7.58 87.66 0.66 21.87 16 13 O -0.55 -27.98 15.02 -3.04 -0.05 -28.03 16 14 N -0.72 -22.76 5.53 -466.79 -2.58 -25.34 16 15 C 0.10 2.58 6.15 85.63 0.53 3.11 16 16 C 0.52 12.12 7.90 87.66 0.69 12.81 16 17 O -0.57 -16.90 15.23 -3.04 -0.05 -16.95 16 18 N -0.69 -11.02 5.57 -442.52 -2.46 -13.49 16 19 C 0.05 0.74 6.43 44.99 0.29 1.03 16 20 C -0.18 -1.85 10.46 30.60 0.32 -1.53 16 21 C -0.17 -1.60 10.46 30.60 0.32 -1.28 16 22 C -0.06 -2.64 4.53 -19.87 -0.09 -2.73 16 23 C -0.12 -5.00 8.90 22.27 0.20 -4.80 16 24 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16 25 C -0.14 -4.55 10.05 22.27 0.22 -4.32 16 26 C -0.13 -4.40 10.05 22.27 0.22 -4.17 16 27 C -0.15 -6.51 9.18 22.27 0.20 -6.30 16 28 H 0.26 16.57 6.24 -92.70 -0.58 15.99 16 29 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.09 3.54 7.97 -2.39 -0.02 3.52 16 31 H 0.41 11.89 7.44 -92.71 -0.69 11.20 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.42 4.40 8.83 -92.71 -0.82 3.58 16 35 H 0.12 2.25 7.40 -2.39 -0.02 2.23 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 4.52 7.85 -2.91 -0.02 4.50 16 41 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 44 H 0.10 4.28 7.95 -2.91 -0.02 4.26 16 Total: -1.00 -79.10 375.09 1.47 -77.63 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.29 Total: 33.15 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: 4.55 Total: -23.04 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -4.75 Total: -98.41 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.09 Total: -44.98 kcal Atomic # 14 Polarization: 53.60 SS G_CDS: 2.05 Total: 55.65 kcal Total: -79.10 1.47 -77.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353689273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.363 kcal (2) G-P(sol) polarization free energy of solvation -79.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds