Wall clock time and date at job start Tue Mar 31 2020 11:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00045 * 2 1 4 4 H 1.48499 * 109.47510 * 264.63689 * 3 2 1 5 5 H 1.48503 * 109.47357 * 24.63359 * 3 2 1 6 6 H 1.48498 * 109.47199 * 144.63576 * 3 2 1 7 7 C 1.37880 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99915 * 4.85219 * 7 2 1 9 9 C 1.50700 * 119.99915 * 184.85496 * 7 2 1 10 10 H 1.09004 * 109.47000 * 34.72268 * 9 7 2 11 11 C 1.52998 * 109.47029 * 154.72090 * 9 7 2 12 12 C 1.50707 * 109.47113 * 294.99958 * 11 9 7 13 13 O 1.21275 * 119.99887 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99677 * 179.97438 * 12 11 9 15 15 C 1.46501 * 119.99475 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.60631 * 324.68150 * 15 14 12 17 17 C 1.53353 * 109.73701 * 204.26795 * 15 14 12 18 18 C 1.53066 * 108.42486 * 172.63506 * 17 15 14 19 19 C 1.50178 * 109.88951 * 48.90417 * 18 17 15 20 20 O 1.21283 * 118.25035 * 162.43908 * 19 18 17 21 21 N 1.33097 * 123.42766 * 342.22798 * 19 18 17 22 22 C 1.45750 * 124.30566 * 2.61094 * 21 19 18 23 23 C 1.50700 * 109.47188 * 274.71922 * 9 7 2 24 24 C 1.38233 * 120.00021 * 295.28087 * 23 9 7 25 25 C 1.38237 * 119.99995 * 179.80785 * 24 23 9 26 26 C 1.38234 * 119.99624 * 0.41919 * 25 24 23 27 27 C 1.38234 * 120.00299 * 359.81019 * 26 25 24 28 28 C 1.38228 * 119.99839 * 359.97438 * 27 26 25 29 29 H 0.97001 * 119.99630 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47283 * 175.00234 * 11 9 7 31 31 H 1.08997 * 109.47250 * 54.99610 * 11 9 7 32 32 H 0.96998 * 120.00266 * 0.02562 * 14 12 11 33 33 H 1.08998 * 109.67388 * 292.37414 * 17 15 14 34 34 H 1.09004 * 109.66864 * 52.90470 * 17 15 14 35 35 H 1.08994 * 109.40080 * 169.02556 * 18 17 15 36 36 H 1.08995 * 109.40559 * 288.77762 * 18 17 15 37 37 H 0.97001 * 117.74701 * 182.38913 * 21 19 18 38 38 H 1.08999 * 109.30748 * 220.38931 * 22 21 19 39 39 H 1.09004 * 109.30064 * 100.80157 * 22 21 19 40 40 H 1.08001 * 120.00171 * 359.97438 * 24 23 9 41 41 H 1.07995 * 120.00101 * 180.20518 * 25 24 23 42 42 H 1.08000 * 119.99741 * 179.79063 * 26 25 24 43 43 H 1.08000 * 119.99859 * 179.97438 * 27 26 25 44 44 H 1.07998 * 120.00198 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6100 1.9810 -1.3939 5 1 1.3945 2.6828 0.5836 6 1 3.4854 1.4755 0.8103 7 6 2.0046 -1.1941 -0.0005 8 1 1.4675 -2.1276 -0.0801 9 6 3.5075 -1.1964 0.1099 10 1 3.8256 -0.3781 0.7559 11 6 3.9730 -2.5267 0.7053 12 6 3.4691 -2.6475 2.1204 13 8 2.8028 -1.7574 2.6049 14 7 3.7580 -3.7451 2.8472 15 6 3.2685 -3.8622 4.2231 16 1 3.2721 -2.8808 4.6973 17 6 4.1694 -4.8189 5.0136 18 6 3.7466 -4.7775 6.4841 19 6 2.2573 -4.9377 6.5922 20 8 1.7900 -5.2501 7.6669 21 7 1.4237 -4.7508 5.5715 22 6 1.8459 -4.4232 4.2155 23 6 4.1121 -1.0199 -1.2591 24 6 3.9294 -1.9909 -2.2259 25 6 4.4806 -1.8271 -3.4829 26 6 5.2219 -0.6963 -3.7705 27 6 5.4086 0.2725 -2.8023 28 6 4.8536 0.1108 -1.5467 29 1 -0.4849 0.8401 -0.0004 30 1 5.0623 -2.5644 0.7031 31 1 3.5798 -3.3494 0.1082 32 1 4.2906 -4.4571 2.4596 33 1 4.0567 -5.8321 4.6277 34 1 5.2089 -4.5041 4.9216 35 1 4.2378 -5.5863 7.0250 36 1 4.0404 -3.8221 6.9186 37 1 0.4732 -4.8420 5.7422 38 1 1.1678 -3.6798 3.7966 39 1 1.8170 -5.3236 3.6018 40 1 3.3536 -2.8763 -1.9999 41 1 4.3351 -2.5841 -4.2392 42 1 5.6554 -0.5698 -4.7516 43 1 5.9881 1.1558 -3.0269 44 1 4.9998 0.8674 -0.7901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355461073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:55 Heat of formation + Delta-G solvation = -53.462201 kcal Electronic energy + Delta-G solvation = -26242.617027 eV Core-core repulsion = 22545.264580 eV Total energy + Delta-G solvation = -3697.352448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51955 -39.27748 -38.48995 -36.65109 -34.26629 -33.87515 -32.56249 -31.72015 -30.30212 -29.49638 -28.24469 -25.91297 -24.70036 -22.95505 -22.34242 -21.91380 -20.36828 -19.67690 -19.05268 -17.44686 -17.03999 -16.67765 -16.20070 -16.02785 -15.88913 -14.99550 -14.70516 -14.66298 -14.30620 -14.09207 -13.95367 -13.83748 -13.44742 -13.15653 -12.85430 -12.65048 -12.49956 -12.29653 -12.09389 -11.90820 -11.76847 -11.53852 -11.20227 -11.15139 -10.76297 -10.62826 -10.40647 -9.94495 -9.89601 -9.64586 -9.26970 -9.20512 -9.09660 -8.84107 -8.51543 -8.26817 -7.85560 -6.04083 -4.00544 2.02305 2.08729 2.54229 3.06182 3.31935 3.36918 3.40120 3.42573 3.48898 4.41568 4.44878 4.45663 4.50626 4.65226 4.74938 5.07372 5.16115 5.23508 5.42625 5.45858 5.48490 5.48711 5.51703 5.58554 5.62528 5.83171 5.87113 5.89849 5.97696 6.00594 6.15886 6.26195 6.49669 6.62581 6.63585 6.66802 6.75830 6.98034 7.08221 7.19010 7.24560 7.52954 7.65047 7.75123 7.85126 8.09871 8.46412 8.84060 8.94692 9.59267 11.08868 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.003482 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.832568 B = 8040.551588 C = 8922.200785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.083 3.917 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.483 4.483 8 H 0.072 0.928 9 C 0.048 3.952 10 H 0.054 0.946 11 C -0.114 4.114 12 C 0.514 3.486 13 O -0.494 6.494 14 N -0.741 5.741 15 C 0.135 3.865 16 H 0.095 0.905 17 C -0.131 4.131 18 C -0.131 4.131 19 C 0.517 3.483 20 O -0.566 6.566 21 N -0.711 5.711 22 C 0.094 3.906 23 C -0.039 4.039 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.150 4.150 27 C -0.122 4.122 28 C -0.142 4.142 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.397 0.603 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.401 0.599 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.994 -9.725 2.652 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.119 4.119 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.520 4.520 8 H 0.090 0.910 9 C 0.029 3.971 10 H 0.073 0.927 11 C -0.154 4.154 12 C 0.300 3.700 13 O -0.364 6.364 14 N -0.396 5.396 15 C 0.028 3.972 16 H 0.113 0.887 17 C -0.169 4.169 18 C -0.171 4.171 19 C 0.304 3.696 20 O -0.446 6.446 21 N -0.363 5.363 22 C -0.031 4.031 23 C -0.039 4.039 24 C -0.126 4.126 25 C -0.142 4.142 26 C -0.169 4.169 27 C -0.140 4.140 28 C -0.160 4.160 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.231 0.769 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.236 0.764 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.318 -9.027 3.494 14.893 hybrid contribution 0.069 0.679 -0.456 0.821 sum 11.387 -8.349 3.038 14.442 Atomic orbital electron populations 1.69877 1.06272 1.26839 1.50466 1.24865 0.94509 0.98757 0.93784 0.87060 0.80350 0.84262 0.78709 1.19795 1.21965 1.18794 1.20588 0.87168 0.94430 1.49807 0.91033 1.18271 0.97153 0.93293 0.88411 0.92749 1.21613 0.99715 1.02051 0.92062 1.20931 0.79791 0.81004 0.88237 1.90772 1.35527 1.38969 1.71168 1.46093 1.57505 1.22698 1.13350 1.20962 0.91829 1.00259 0.84126 0.88652 1.21963 1.00639 1.00292 0.94027 1.21581 0.92067 1.05634 0.97864 1.20114 0.89937 0.76054 0.83483 1.90757 1.77996 1.48751 1.27058 1.45370 1.10669 1.70583 1.09652 1.21932 0.97794 1.01129 0.82287 1.20767 0.91414 0.92732 0.99023 1.20924 0.99150 0.99745 0.92742 1.21051 0.98713 0.97676 0.96797 1.20863 1.01842 0.95446 0.98704 1.20969 1.00534 0.98598 0.93895 1.21086 0.99489 0.98542 0.96885 0.92788 0.91072 0.89588 0.76923 0.90581 0.89658 0.87786 0.87882 0.76354 0.88978 0.91273 0.86349 0.87122 0.87342 0.87305 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 3 Si 0.87 22.01 24.76 -169.99 -4.21 17.80 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.26 -6.35 5.95 56.52 0.34 -6.02 16 7 C -0.48 -12.69 7.19 -34.44 -0.25 -12.94 16 8 H 0.07 2.03 8.05 -52.49 -0.42 1.61 16 9 C 0.05 1.04 1.24 -92.92 -0.12 0.92 16 10 H 0.05 1.28 5.26 -51.93 -0.27 1.01 16 11 C -0.11 -1.89 4.84 -27.88 -0.13 -2.03 16 12 C 0.51 8.74 7.54 -10.98 -0.08 8.66 16 13 O -0.49 -11.01 14.66 5.56 0.08 -10.92 16 14 N -0.74 -8.64 5.09 -53.66 -0.27 -8.92 16 15 C 0.13 1.49 2.52 -67.78 -0.17 1.32 16 16 H 0.10 1.28 7.58 -51.93 -0.39 0.89 16 17 C -0.13 -1.00 5.52 -26.51 -0.15 -1.15 16 18 C -0.13 -1.15 6.03 -28.10 -0.17 -1.32 16 19 C 0.52 6.42 7.71 -11.98 -0.09 6.33 16 20 O -0.57 -9.23 17.78 5.56 0.10 -9.13 16 21 N -0.71 -8.15 5.43 -61.45 -0.33 -8.48 16 22 C 0.09 1.08 6.76 -4.48 -0.03 1.05 16 23 C -0.04 -0.77 4.30 -104.62 -0.45 -1.22 16 24 C -0.11 -1.95 8.94 -39.58 -0.35 -2.31 16 25 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 26 C -0.15 -2.37 10.05 -39.58 -0.40 -2.77 16 27 C -0.12 -2.06 10.05 -39.59 -0.40 -2.46 16 28 C -0.14 -2.74 8.15 -39.59 -0.32 -3.07 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.31 7.33 -51.93 -0.38 0.93 16 32 H 0.40 3.29 8.61 -40.82 -0.35 2.94 16 33 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.40 4.39 8.79 -40.82 -0.36 4.03 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.12 2.03 7.37 -52.49 -0.39 1.65 16 41 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.11 2.11 6.76 -52.49 -0.35 1.75 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -35.13 357.40 -8.43 -43.56 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.35 Total: 8.39 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.61 Total: -11.11 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.17 Total: -43.97 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.18 Total: -20.06 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.21 Total: 17.80 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.13 -8.43 -43.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355461073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.899 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds