Wall clock time and date at job start Tue Mar 31 2020 11:16:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86795 * 120.00045 * 2 1
4 4 H 1.48499 * 109.47510 * 264.63689 * 3 2 1
5 5 H 1.48503 * 109.47357 * 24.63359 * 3 2 1
6 6 H 1.48498 * 109.47199 * 144.63576 * 3 2 1
7 7 C 1.37880 * 120.00078 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99915 * 4.85219 * 7 2 1
9 9 C 1.50700 * 119.99915 * 184.85496 * 7 2 1
10 10 H 1.09004 * 109.47000 * 34.72268 * 9 7 2
11 11 C 1.52998 * 109.47029 * 154.72090 * 9 7 2
12 12 C 1.50707 * 109.47113 * 294.99958 * 11 9 7
13 13 O 1.21275 * 119.99887 * 0.02562 * 12 11 9
14 14 N 1.34777 * 119.99677 * 179.97438 * 12 11 9
15 15 C 1.46501 * 119.99475 * 179.97438 * 14 12 11
16 16 H 1.08998 * 109.60631 * 324.68150 * 15 14 12
17 17 C 1.53353 * 109.73701 * 204.26795 * 15 14 12
18 18 C 1.53066 * 108.42486 * 172.63506 * 17 15 14
19 19 C 1.50178 * 109.88951 * 48.90417 * 18 17 15
20 20 O 1.21283 * 118.25035 * 162.43908 * 19 18 17
21 21 N 1.33097 * 123.42766 * 342.22798 * 19 18 17
22 22 C 1.45750 * 124.30566 * 2.61094 * 21 19 18
23 23 C 1.50700 * 109.47188 * 274.71922 * 9 7 2
24 24 C 1.38233 * 120.00021 * 295.28087 * 23 9 7
25 25 C 1.38237 * 119.99995 * 179.80785 * 24 23 9
26 26 C 1.38234 * 119.99624 * 0.41919 * 25 24 23
27 27 C 1.38234 * 120.00299 * 359.81019 * 26 25 24
28 28 C 1.38228 * 119.99839 * 359.97438 * 27 26 25
29 29 H 0.97001 * 119.99630 * 0.02562 * 1 2 3
30 30 H 1.08996 * 109.47283 * 175.00234 * 11 9 7
31 31 H 1.08997 * 109.47250 * 54.99610 * 11 9 7
32 32 H 0.96998 * 120.00266 * 0.02562 * 14 12 11
33 33 H 1.08998 * 109.67388 * 292.37414 * 17 15 14
34 34 H 1.09004 * 109.66864 * 52.90470 * 17 15 14
35 35 H 1.08994 * 109.40080 * 169.02556 * 18 17 15
36 36 H 1.08995 * 109.40559 * 288.77762 * 18 17 15
37 37 H 0.97001 * 117.74701 * 182.38913 * 21 19 18
38 38 H 1.08999 * 109.30748 * 220.38931 * 22 21 19
39 39 H 1.09004 * 109.30064 * 100.80157 * 22 21 19
40 40 H 1.08001 * 120.00171 * 359.97438 * 24 23 9
41 41 H 1.07995 * 120.00101 * 180.20518 * 25 24 23
42 42 H 1.08000 * 119.99741 * 179.79063 * 26 25 24
43 43 H 1.08000 * 119.99859 * 179.97438 * 27 26 25
44 44 H 1.07998 * 120.00198 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.6100 1.9810 -1.3939
5 1 1.3945 2.6828 0.5836
6 1 3.4854 1.4755 0.8103
7 6 2.0046 -1.1941 -0.0005
8 1 1.4675 -2.1276 -0.0801
9 6 3.5075 -1.1964 0.1099
10 1 3.8256 -0.3781 0.7559
11 6 3.9730 -2.5267 0.7053
12 6 3.4691 -2.6475 2.1204
13 8 2.8028 -1.7574 2.6049
14 7 3.7580 -3.7451 2.8472
15 6 3.2685 -3.8622 4.2231
16 1 3.2721 -2.8808 4.6973
17 6 4.1694 -4.8189 5.0136
18 6 3.7466 -4.7775 6.4841
19 6 2.2573 -4.9377 6.5922
20 8 1.7900 -5.2501 7.6669
21 7 1.4237 -4.7508 5.5715
22 6 1.8459 -4.4232 4.2155
23 6 4.1121 -1.0199 -1.2591
24 6 3.9294 -1.9909 -2.2259
25 6 4.4806 -1.8271 -3.4829
26 6 5.2219 -0.6963 -3.7705
27 6 5.4086 0.2725 -2.8023
28 6 4.8536 0.1108 -1.5467
29 1 -0.4849 0.8401 -0.0004
30 1 5.0623 -2.5644 0.7031
31 1 3.5798 -3.3494 0.1082
32 1 4.2906 -4.4571 2.4596
33 1 4.0567 -5.8321 4.6277
34 1 5.2089 -4.5041 4.9216
35 1 4.2378 -5.5863 7.0250
36 1 4.0404 -3.8221 6.9186
37 1 0.4732 -4.8420 5.7422
38 1 1.1678 -3.6798 3.7966
39 1 1.8170 -5.3236 3.6018
40 1 3.3536 -2.8763 -1.9999
41 1 4.3351 -2.5841 -4.2392
42 1 5.6554 -0.5698 -4.7516
43 1 5.9881 1.1558 -3.0269
44 1 4.9998 0.8674 -0.7901
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000355461073.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:16:54
Heat of formation + Delta-G solvation = -80.065685 kcal
Electronic energy + Delta-G solvation = -26243.770641 eV
Core-core repulsion = 22545.264580 eV
Total energy + Delta-G solvation = -3698.506061 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.54018 -40.60973 -39.81355 -37.78079 -35.85491 -35.05799 -33.74925 -33.40114
-31.62973 -30.73656 -29.46513 -27.61581 -25.59660 -24.38516 -23.50220 -23.19824
-21.69186 -20.88545 -20.23758 -19.01637 -18.44981 -18.01018 -17.28699 -17.11993
-17.05168 -16.49111 -16.10869 -15.89358 -15.61926 -15.39698 -15.04033 -14.96892
-14.75713 -14.45830 -14.40065 -14.14945 -13.91635 -13.60140 -13.34564 -13.07532
-13.00368 -12.79370 -12.61276 -12.41468 -12.10916 -11.92466 -11.85876 -11.76588
-11.45009 -11.03891 -10.90785 -10.75710 -10.48714 -10.24292 -9.97348 -9.61728
-9.28850 -8.21822 -6.17039 0.67385 0.73691 1.31239 1.33278 1.38483
1.56250 1.91910 2.11182 2.38781 2.47937 3.08213 3.22558 3.58967
3.67043 3.71293 3.96492 4.12015 4.14033 4.28674 4.32649 4.32981
4.43167 4.45862 4.53059 4.61161 4.67821 4.76125 4.84779 4.85605
4.89272 5.04833 5.08386 5.18864 5.25583 5.40140 5.41035 5.57684
5.67797 5.72058 5.77189 5.82643 6.02104 6.28475 6.34057 6.35580
6.79481 6.82375 7.11322 7.44993 7.59078 8.95019
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.017346 B = 0.003482 C = 0.003137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1613.832568 B = 8040.551588 C = 8922.200785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.952 5.952
2 C 0.020 3.980
3 Si 0.916 3.084
4 H -0.263 1.263
5 H -0.305 1.305
6 H -0.250 1.250
7 C -0.456 4.456
8 H 0.039 0.961
9 C 0.048 3.952
10 H 0.031 0.969
11 C -0.111 4.111
12 C 0.512 3.488
13 O -0.558 6.558
14 N -0.714 5.714
15 C 0.132 3.868
16 H 0.068 0.932
17 C -0.115 4.115
18 C -0.126 4.126
19 C 0.511 3.489
20 O -0.610 6.610
21 N -0.709 5.709
22 C 0.100 3.900
23 C -0.061 4.061
24 C -0.119 4.119
25 C -0.121 4.121
26 C -0.143 4.143
27 C -0.126 4.126
28 C -0.163 4.163
29 H 0.257 0.743
30 H 0.109 0.891
31 H 0.102 0.898
32 H 0.420 0.580
33 H 0.098 0.902
34 H 0.110 0.890
35 H 0.126 0.874
36 H 0.109 0.891
37 H 0.400 0.600
38 H 0.055 0.945
39 H 0.091 0.909
40 H 0.121 0.879
41 H 0.143 0.857
42 H 0.146 0.854
43 H 0.136 0.864
44 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.808 -11.372 0.919 19.495
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.176 4.176
3 Si 0.744 3.256
4 H -0.188 1.188
5 H -0.232 1.232
6 H -0.174 1.174
7 C -0.494 4.494
8 H 0.057 0.943
9 C 0.029 3.971
10 H 0.049 0.951
11 C -0.151 4.151
12 C 0.299 3.701
13 O -0.434 6.434
14 N -0.369 5.369
15 C 0.026 3.974
16 H 0.087 0.913
17 C -0.153 4.153
18 C -0.166 4.166
19 C 0.300 3.700
20 O -0.493 6.493
21 N -0.358 5.358
22 C -0.025 4.025
23 C -0.062 4.062
24 C -0.137 4.137
25 C -0.139 4.139
26 C -0.160 4.160
27 C -0.144 4.144
28 C -0.181 4.181
29 H 0.066 0.934
30 H 0.127 0.873
31 H 0.121 0.879
32 H 0.258 0.742
33 H 0.117 0.883
34 H 0.128 0.872
35 H 0.144 0.856
36 H 0.127 0.873
37 H 0.235 0.765
38 H 0.074 0.926
39 H 0.109 0.891
40 H 0.139 0.861
41 H 0.161 0.839
42 H 0.163 0.837
43 H 0.153 0.847
44 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 15.209 -10.736 1.733 18.697
hybrid contribution -1.058 1.073 0.019 1.506
sum 14.151 -9.663 1.753 17.225
Atomic orbital electron populations
1.70028 1.07877 1.26999 1.54518 1.25580 0.95028 1.02030 0.94978
0.86271 0.79476 0.80737 0.79133 1.18821 1.23245 1.17436 1.20847
0.89985 0.92431 1.46107 0.94280 1.18127 0.93903 0.95258 0.89810
0.95084 1.21562 1.02041 0.99794 0.91665 1.21089 0.78930 0.81410
0.88638 1.90763 1.38608 1.41583 1.72467 1.45733 1.56327 1.21629
1.13252 1.21027 0.92504 1.00098 0.83772 0.91344 1.21916 1.00777
1.00304 0.92287 1.21638 0.89081 1.06823 0.99044 1.20841 0.91580
0.74930 0.82630 1.90737 1.79051 1.50938 1.28582 1.45411 1.10871
1.69862 1.09677 1.21835 0.97399 1.00990 0.82307 1.20520 0.93460
0.94174 0.98050 1.21062 0.99609 0.99571 0.93507 1.21440 0.97459
0.98592 0.96434 1.21336 1.00461 0.94358 0.99876 1.21318 1.00120
0.99931 0.93006 1.21193 1.00624 0.98182 0.98140 0.93426 0.87253
0.87941 0.74246 0.88325 0.87150 0.85594 0.87255 0.76486 0.92606
0.89128 0.86105 0.83897 0.83674 0.84662 0.88096
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16
2 C 0.02 1.19 5.47 84.66 0.46 1.65 16
3 Si 0.92 47.02 24.76 68.60 1.70 48.71 16
4 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16
5 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16
6 H -0.25 -12.10 5.95 99.48 0.59 -11.51 16
7 C -0.46 -24.80 7.19 25.60 0.18 -24.61 16
8 H 0.04 2.32 8.05 -2.91 -0.02 2.30 16
9 C 0.05 2.09 1.24 -12.29 -0.02 2.07 16
10 H 0.03 1.48 5.26 -2.39 -0.01 1.47 16
11 C -0.11 -3.53 4.84 29.85 0.14 -3.38 16
12 C 0.51 17.26 7.54 87.66 0.66 17.92 16
13 O -0.56 -25.93 14.66 -3.01 -0.04 -25.97 16
14 N -0.71 -15.29 5.09 -442.08 -2.25 -17.54 16
15 C 0.13 2.76 2.52 45.09 0.11 2.88 16
16 H 0.07 1.86 7.58 -2.39 -0.02 1.85 16
17 C -0.12 -1.35 5.52 30.73 0.17 -1.18 16
18 C -0.13 -1.91 6.03 29.71 0.18 -1.73 16
19 C 0.51 12.40 7.71 87.75 0.68 13.08 16
20 O -0.61 -20.02 17.78 -3.04 -0.05 -20.08 16
21 N -0.71 -16.37 5.43 -467.64 -2.54 -18.91 16
22 C 0.10 2.30 6.76 86.50 0.58 2.88 16
23 C -0.06 -2.38 4.30 -19.87 -0.09 -2.47 16
24 C -0.12 -4.07 8.94 22.27 0.20 -3.87 16
25 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16
26 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16
27 C -0.13 -3.81 10.05 22.27 0.22 -3.59 16
28 C -0.16 -6.02 8.15 22.27 0.18 -5.84 16
29 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16
30 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16
31 H 0.10 2.92 7.33 -2.39 -0.02 2.90 16
32 H 0.42 5.37 8.61 -92.71 -0.80 4.57 16
33 H 0.10 0.81 8.13 -2.39 -0.02 0.79 16
34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16
35 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16
36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16
37 H 0.40 9.18 8.79 -92.71 -0.82 8.37 16
38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
39 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16
40 H 0.12 3.95 7.37 -2.91 -0.02 3.92 16
41 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16
42 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16
43 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16
44 H 0.10 3.80 6.76 -2.91 -0.02 3.78 16
Total: -1.00 -83.22 357.40 0.54 -82.69
By element:
Atomic # 1 Polarization: 25.77 SS G_CDS: -0.70 Total: 25.07 kcal
Atomic # 6 Polarization: -17.12 SS G_CDS: 4.13 Total: -12.99 kcal
Atomic # 7 Polarization: -92.93 SS G_CDS: -4.49 Total: -97.43 kcal
Atomic # 8 Polarization: -45.95 SS G_CDS: -0.10 Total: -46.05 kcal
Atomic # 14 Polarization: 47.02 SS G_CDS: 1.70 Total: 48.71 kcal
Total: -83.22 0.54 -82.69 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000355461073.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.620 kcal
(2) G-P(sol) polarization free energy of solvation -83.223 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.066 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds