Wall clock time and date at job start Tue Mar 31 2020 11:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00045 * 2 1 4 4 H 1.48499 * 109.47510 * 264.63689 * 3 2 1 5 5 H 1.48503 * 109.47357 * 24.63359 * 3 2 1 6 6 H 1.48498 * 109.47199 * 144.63576 * 3 2 1 7 7 C 1.37880 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99915 * 4.85219 * 7 2 1 9 9 C 1.50700 * 119.99915 * 184.85496 * 7 2 1 10 10 H 1.09004 * 109.47000 * 34.72268 * 9 7 2 11 11 C 1.52998 * 109.47029 * 154.72090 * 9 7 2 12 12 C 1.50707 * 109.47113 * 294.99958 * 11 9 7 13 13 O 1.21275 * 119.99887 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99677 * 179.97438 * 12 11 9 15 15 C 1.46501 * 119.99475 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.60631 * 324.68150 * 15 14 12 17 17 C 1.53353 * 109.73701 * 204.26795 * 15 14 12 18 18 C 1.53066 * 108.42486 * 172.63506 * 17 15 14 19 19 C 1.50178 * 109.88951 * 48.90417 * 18 17 15 20 20 O 1.21283 * 118.25035 * 162.43908 * 19 18 17 21 21 N 1.33097 * 123.42766 * 342.22798 * 19 18 17 22 22 C 1.45750 * 124.30566 * 2.61094 * 21 19 18 23 23 C 1.50700 * 109.47188 * 274.71922 * 9 7 2 24 24 C 1.38233 * 120.00021 * 295.28087 * 23 9 7 25 25 C 1.38237 * 119.99995 * 179.80785 * 24 23 9 26 26 C 1.38234 * 119.99624 * 0.41919 * 25 24 23 27 27 C 1.38234 * 120.00299 * 359.81019 * 26 25 24 28 28 C 1.38228 * 119.99839 * 359.97438 * 27 26 25 29 29 H 0.97001 * 119.99630 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47283 * 175.00234 * 11 9 7 31 31 H 1.08997 * 109.47250 * 54.99610 * 11 9 7 32 32 H 0.96998 * 120.00266 * 0.02562 * 14 12 11 33 33 H 1.08998 * 109.67388 * 292.37414 * 17 15 14 34 34 H 1.09004 * 109.66864 * 52.90470 * 17 15 14 35 35 H 1.08994 * 109.40080 * 169.02556 * 18 17 15 36 36 H 1.08995 * 109.40559 * 288.77762 * 18 17 15 37 37 H 0.97001 * 117.74701 * 182.38913 * 21 19 18 38 38 H 1.08999 * 109.30748 * 220.38931 * 22 21 19 39 39 H 1.09004 * 109.30064 * 100.80157 * 22 21 19 40 40 H 1.08001 * 120.00171 * 359.97438 * 24 23 9 41 41 H 1.07995 * 120.00101 * 180.20518 * 25 24 23 42 42 H 1.08000 * 119.99741 * 179.79063 * 26 25 24 43 43 H 1.08000 * 119.99859 * 179.97438 * 27 26 25 44 44 H 1.07998 * 120.00198 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6100 1.9810 -1.3939 5 1 1.3945 2.6828 0.5836 6 1 3.4854 1.4755 0.8103 7 6 2.0046 -1.1941 -0.0005 8 1 1.4675 -2.1276 -0.0801 9 6 3.5075 -1.1964 0.1099 10 1 3.8256 -0.3781 0.7559 11 6 3.9730 -2.5267 0.7053 12 6 3.4691 -2.6475 2.1204 13 8 2.8028 -1.7574 2.6049 14 7 3.7580 -3.7451 2.8472 15 6 3.2685 -3.8622 4.2231 16 1 3.2721 -2.8808 4.6973 17 6 4.1694 -4.8189 5.0136 18 6 3.7466 -4.7775 6.4841 19 6 2.2573 -4.9377 6.5922 20 8 1.7900 -5.2501 7.6669 21 7 1.4237 -4.7508 5.5715 22 6 1.8459 -4.4232 4.2155 23 6 4.1121 -1.0199 -1.2591 24 6 3.9294 -1.9909 -2.2259 25 6 4.4806 -1.8271 -3.4829 26 6 5.2219 -0.6963 -3.7705 27 6 5.4086 0.2725 -2.8023 28 6 4.8536 0.1108 -1.5467 29 1 -0.4849 0.8401 -0.0004 30 1 5.0623 -2.5644 0.7031 31 1 3.5798 -3.3494 0.1082 32 1 4.2906 -4.4571 2.4596 33 1 4.0567 -5.8321 4.6277 34 1 5.2089 -4.5041 4.9216 35 1 4.2378 -5.5863 7.0250 36 1 4.0404 -3.8221 6.9186 37 1 0.4732 -4.8420 5.7422 38 1 1.1678 -3.6798 3.7966 39 1 1.8170 -5.3236 3.6018 40 1 3.3536 -2.8763 -1.9999 41 1 4.3351 -2.5841 -4.2392 42 1 5.6554 -0.5698 -4.7516 43 1 5.9881 1.1558 -3.0269 44 1 4.9998 0.8674 -0.7901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355461073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:54 Heat of formation + Delta-G solvation = -80.065685 kcal Electronic energy + Delta-G solvation = -26243.770641 eV Core-core repulsion = 22545.264580 eV Total energy + Delta-G solvation = -3698.506061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54018 -40.60973 -39.81355 -37.78079 -35.85491 -35.05799 -33.74925 -33.40114 -31.62973 -30.73656 -29.46513 -27.61581 -25.59660 -24.38516 -23.50220 -23.19824 -21.69186 -20.88545 -20.23758 -19.01637 -18.44981 -18.01018 -17.28699 -17.11993 -17.05168 -16.49111 -16.10869 -15.89358 -15.61926 -15.39698 -15.04033 -14.96892 -14.75713 -14.45830 -14.40065 -14.14945 -13.91635 -13.60140 -13.34564 -13.07532 -13.00368 -12.79370 -12.61276 -12.41468 -12.10916 -11.92466 -11.85876 -11.76588 -11.45009 -11.03891 -10.90785 -10.75710 -10.48714 -10.24292 -9.97348 -9.61728 -9.28850 -8.21822 -6.17039 0.67385 0.73691 1.31239 1.33278 1.38483 1.56250 1.91910 2.11182 2.38781 2.47937 3.08213 3.22558 3.58967 3.67043 3.71293 3.96492 4.12015 4.14033 4.28674 4.32649 4.32981 4.43167 4.45862 4.53059 4.61161 4.67821 4.76125 4.84779 4.85605 4.89272 5.04833 5.08386 5.18864 5.25583 5.40140 5.41035 5.57684 5.67797 5.72058 5.77189 5.82643 6.02104 6.28475 6.34057 6.35580 6.79481 6.82375 7.11322 7.44993 7.59078 8.95019 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.003482 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.832568 B = 8040.551588 C = 8922.200785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.020 3.980 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.305 1.305 6 H -0.250 1.250 7 C -0.456 4.456 8 H 0.039 0.961 9 C 0.048 3.952 10 H 0.031 0.969 11 C -0.111 4.111 12 C 0.512 3.488 13 O -0.558 6.558 14 N -0.714 5.714 15 C 0.132 3.868 16 H 0.068 0.932 17 C -0.115 4.115 18 C -0.126 4.126 19 C 0.511 3.489 20 O -0.610 6.610 21 N -0.709 5.709 22 C 0.100 3.900 23 C -0.061 4.061 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.143 4.143 27 C -0.126 4.126 28 C -0.163 4.163 29 H 0.257 0.743 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.420 0.580 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.400 0.600 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.808 -11.372 0.919 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.176 4.176 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.232 1.232 6 H -0.174 1.174 7 C -0.494 4.494 8 H 0.057 0.943 9 C 0.029 3.971 10 H 0.049 0.951 11 C -0.151 4.151 12 C 0.299 3.701 13 O -0.434 6.434 14 N -0.369 5.369 15 C 0.026 3.974 16 H 0.087 0.913 17 C -0.153 4.153 18 C -0.166 4.166 19 C 0.300 3.700 20 O -0.493 6.493 21 N -0.358 5.358 22 C -0.025 4.025 23 C -0.062 4.062 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.160 4.160 27 C -0.144 4.144 28 C -0.181 4.181 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.258 0.742 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.235 0.765 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.209 -10.736 1.733 18.697 hybrid contribution -1.058 1.073 0.019 1.506 sum 14.151 -9.663 1.753 17.225 Atomic orbital electron populations 1.70028 1.07877 1.26999 1.54518 1.25580 0.95028 1.02030 0.94978 0.86271 0.79476 0.80737 0.79133 1.18821 1.23245 1.17436 1.20847 0.89985 0.92431 1.46107 0.94280 1.18127 0.93903 0.95258 0.89810 0.95084 1.21562 1.02041 0.99794 0.91665 1.21089 0.78930 0.81410 0.88638 1.90763 1.38608 1.41583 1.72467 1.45733 1.56327 1.21629 1.13252 1.21027 0.92504 1.00098 0.83772 0.91344 1.21916 1.00777 1.00304 0.92287 1.21638 0.89081 1.06823 0.99044 1.20841 0.91580 0.74930 0.82630 1.90737 1.79051 1.50938 1.28582 1.45411 1.10871 1.69862 1.09677 1.21835 0.97399 1.00990 0.82307 1.20520 0.93460 0.94174 0.98050 1.21062 0.99609 0.99571 0.93507 1.21440 0.97459 0.98592 0.96434 1.21336 1.00461 0.94358 0.99876 1.21318 1.00120 0.99931 0.93006 1.21193 1.00624 0.98182 0.98140 0.93426 0.87253 0.87941 0.74246 0.88325 0.87150 0.85594 0.87255 0.76486 0.92606 0.89128 0.86105 0.83897 0.83674 0.84662 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 2 C 0.02 1.19 5.47 84.66 0.46 1.65 16 3 Si 0.92 47.02 24.76 68.60 1.70 48.71 16 4 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 6 H -0.25 -12.10 5.95 99.48 0.59 -11.51 16 7 C -0.46 -24.80 7.19 25.60 0.18 -24.61 16 8 H 0.04 2.32 8.05 -2.91 -0.02 2.30 16 9 C 0.05 2.09 1.24 -12.29 -0.02 2.07 16 10 H 0.03 1.48 5.26 -2.39 -0.01 1.47 16 11 C -0.11 -3.53 4.84 29.85 0.14 -3.38 16 12 C 0.51 17.26 7.54 87.66 0.66 17.92 16 13 O -0.56 -25.93 14.66 -3.01 -0.04 -25.97 16 14 N -0.71 -15.29 5.09 -442.08 -2.25 -17.54 16 15 C 0.13 2.76 2.52 45.09 0.11 2.88 16 16 H 0.07 1.86 7.58 -2.39 -0.02 1.85 16 17 C -0.12 -1.35 5.52 30.73 0.17 -1.18 16 18 C -0.13 -1.91 6.03 29.71 0.18 -1.73 16 19 C 0.51 12.40 7.71 87.75 0.68 13.08 16 20 O -0.61 -20.02 17.78 -3.04 -0.05 -20.08 16 21 N -0.71 -16.37 5.43 -467.64 -2.54 -18.91 16 22 C 0.10 2.30 6.76 86.50 0.58 2.88 16 23 C -0.06 -2.38 4.30 -19.87 -0.09 -2.47 16 24 C -0.12 -4.07 8.94 22.27 0.20 -3.87 16 25 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16 26 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 27 C -0.13 -3.81 10.05 22.27 0.22 -3.59 16 28 C -0.16 -6.02 8.15 22.27 0.18 -5.84 16 29 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.10 2.92 7.33 -2.39 -0.02 2.90 16 32 H 0.42 5.37 8.61 -92.71 -0.80 4.57 16 33 H 0.10 0.81 8.13 -2.39 -0.02 0.79 16 34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.40 9.18 8.79 -92.71 -0.82 8.37 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.12 3.95 7.37 -2.91 -0.02 3.92 16 41 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.10 3.80 6.76 -2.91 -0.02 3.78 16 Total: -1.00 -83.22 357.40 0.54 -82.69 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.70 Total: 25.07 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.13 Total: -12.99 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -4.49 Total: -97.43 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -0.10 Total: -46.05 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.70 Total: 48.71 kcal Total: -83.22 0.54 -82.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355461073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.620 kcal (2) G-P(sol) polarization free energy of solvation -83.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds