Wall clock time and date at job start Tue Mar 31 2020 11:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48494 * 109.47559 * 270.00387 * 3 2 1 5 5 H 1.48506 * 109.46987 * 30.00427 * 3 2 1 6 6 H 1.48492 * 109.47018 * 149.99876 * 3 2 1 7 7 C 1.37875 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00189 * 186.16881 * 7 2 1 9 9 C 1.50699 * 119.99721 * 6.17370 * 7 2 1 10 10 H 1.09001 * 109.47126 * 181.36761 * 9 7 2 11 11 C 1.53003 * 109.47329 * 301.36578 * 9 7 2 12 12 C 1.50705 * 109.46982 * 295.00322 * 11 9 7 13 13 O 1.21285 * 119.99676 * 359.97438 * 12 11 9 14 14 N 1.34770 * 119.99935 * 179.97438 * 12 11 9 15 15 C 1.47024 * 125.64975 * 359.69441 * 14 12 11 16 16 C 1.54322 * 107.27106 * 179.20403 * 15 14 12 17 17 C 1.55150 * 102.94504 * 337.80595 * 16 15 14 18 18 H 1.09004 * 111.00524 * 277.43504 * 17 16 15 19 19 C 1.50692 * 111.00665 * 153.57825 * 17 16 15 20 20 N 1.34775 * 120.00241 * 67.80712 * 19 17 16 21 21 O 1.21283 * 119.99824 * 247.80365 * 19 17 16 22 22 C 1.47424 * 125.64932 * 179.97438 * 14 12 11 23 23 C 1.50704 * 109.47541 * 61.36732 * 9 7 2 24 24 C 1.38235 * 119.99627 * 91.36514 * 23 9 7 25 25 C 1.38238 * 119.99462 * 179.81242 * 24 23 9 26 26 C 1.38243 * 120.00168 * 0.42010 * 25 24 23 27 27 C 1.38240 * 119.99743 * 359.81624 * 26 25 24 28 28 C 1.38230 * 119.99807 * 271.64642 * 23 9 7 29 29 H 0.97005 * 120.00187 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47345 * 175.00614 * 11 9 7 31 31 H 1.08998 * 109.46808 * 54.99628 * 11 9 7 32 32 H 1.09003 * 109.88099 * 298.62141 * 15 14 12 33 33 H 1.08997 * 109.88184 * 59.78535 * 15 14 12 34 34 H 1.09003 * 110.71532 * 219.43930 * 16 15 14 35 35 H 1.08997 * 110.87470 * 96.24370 * 16 15 14 36 36 H 0.97002 * 119.99988 * 359.97438 * 20 19 17 37 37 H 0.96994 * 120.00056 * 180.02562 * 20 19 17 38 38 H 1.09003 * 110.36709 * 322.70186 * 22 14 12 39 39 H 1.09004 * 110.36869 * 84.91263 * 22 14 12 40 40 H 1.07997 * 120.00318 * 0.02562 * 24 23 9 41 41 H 1.07997 * 119.99953 * 180.21067 * 25 24 23 42 42 H 1.07998 * 120.00012 * 179.79136 * 26 25 24 43 43 H 1.07997 * 119.99967 * 179.97438 * 27 26 25 44 44 H 1.08003 * 120.00549 * 359.97401 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.1000 9 6 1.2576 -2.4952 -0.1415 10 1 1.9624 -3.3255 -0.0961 11 6 0.2417 -2.6259 0.9952 12 6 0.9700 -2.7247 2.3109 13 8 2.1822 -2.6941 2.3368 14 7 0.2742 -2.8470 3.4586 15 6 -1.1910 -2.8906 3.5720 16 6 -1.5300 -3.0578 5.0682 17 6 -0.2286 -3.6669 5.6535 18 1 -0.1975 -4.7454 5.4979 19 6 -0.0841 -3.3298 7.1151 20 7 -0.9379 -3.8557 8.0156 21 8 0.8006 -2.5853 7.4810 22 6 0.8562 -2.9534 4.8089 23 6 0.5368 -2.5200 -1.4647 24 6 1.1566 -3.0531 -2.5794 25 6 0.4939 -3.0793 -3.7923 26 6 -0.7853 -2.5647 -3.8924 27 6 -1.4031 -2.0272 -2.7787 28 6 -0.7419 -2.0045 -1.5650 29 1 -0.4851 0.8401 0.0004 30 1 -0.3590 -3.5228 0.8443 31 1 -0.4078 -1.7506 1.0043 32 1 -1.6197 -1.9615 3.1963 33 1 -1.5815 -3.7367 3.0066 34 1 -2.3688 -3.7414 5.1994 35 1 -1.7450 -2.0932 5.5279 36 1 -1.6456 -4.4509 7.7228 37 1 -0.8451 -3.6384 8.9563 38 1 1.7690 -3.5485 4.7828 39 1 1.0620 -1.9620 5.2126 40 1 2.1571 -3.4521 -2.5020 41 1 0.9767 -3.4989 -4.6625 42 1 -1.3017 -2.5822 -4.8408 43 1 -2.4022 -1.6248 -2.8570 44 1 -1.2245 -1.5843 -0.6950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355666544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:04 Heat of formation + Delta-G solvation = -45.768694 kcal Electronic energy + Delta-G solvation = -26617.113600 eV Core-core repulsion = 22920.094768 eV Total energy + Delta-G solvation = -3697.018832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.24163 -38.92427 -38.11414 -36.56343 -34.19119 -33.90673 -31.47408 -30.98634 -29.81021 -29.16639 -28.26787 -26.02472 -23.95153 -22.42934 -22.22755 -21.36132 -20.14229 -19.73551 -18.49644 -17.63811 -17.12516 -16.64376 -16.02672 -15.66160 -15.24489 -15.07675 -14.73060 -14.29715 -13.89020 -13.80479 -13.63468 -13.55512 -13.17059 -12.90591 -12.40233 -12.20340 -12.14620 -11.85082 -11.60313 -11.45865 -11.31086 -11.20793 -10.95433 -10.88230 -10.72928 -10.36713 -10.17635 -10.06501 -9.93737 -9.93470 -9.28832 -9.18392 -8.70442 -8.40531 -8.04840 -7.80129 -7.43743 -5.97853 -4.05150 2.43253 2.48542 2.57383 3.17265 3.34136 3.39956 3.47069 3.64503 3.79929 4.33776 4.44614 4.46408 4.72224 4.96897 5.04216 5.26276 5.26902 5.29294 5.56403 5.71547 5.80762 5.86149 5.91341 5.99398 6.01504 6.08666 6.20920 6.40353 6.46350 6.52820 6.61714 6.71082 6.78342 6.85447 7.06167 7.14216 7.20413 7.28530 7.49782 7.55128 7.70603 7.98628 8.04598 8.09045 8.19375 8.25378 8.37684 8.92424 9.20998 9.58556 10.97063 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.003837 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.021152 B = 7294.811758 C = 8204.592442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.470 4.470 8 H 0.061 0.939 9 C 0.087 3.913 10 H 0.036 0.964 11 C -0.133 4.133 12 C 0.542 3.458 13 O -0.524 6.524 14 N -0.635 5.635 15 C 0.107 3.893 16 C -0.118 4.118 17 C -0.129 4.129 18 H 0.110 0.890 19 C 0.530 3.470 20 N -0.856 5.856 21 O -0.536 6.536 22 C 0.127 3.873 23 C -0.031 4.031 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.154 4.154 27 C -0.144 4.144 28 C -0.076 4.076 29 H 0.261 0.739 30 H 0.050 0.950 31 H 0.138 0.862 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.401 0.599 37 H 0.400 0.600 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.121 -9.382 8.940 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.507 4.507 8 H 0.079 0.921 9 C 0.067 3.933 10 H 0.055 0.945 11 C -0.173 4.173 12 C 0.333 3.667 13 O -0.398 6.398 14 N -0.373 5.373 15 C -0.017 4.017 16 C -0.157 4.157 17 C -0.151 4.151 18 H 0.128 0.872 19 C 0.314 3.686 20 N -0.420 5.420 21 O -0.411 6.411 22 C 0.004 3.996 23 C -0.031 4.031 24 C -0.150 4.150 25 C -0.161 4.161 26 C -0.172 4.172 27 C -0.163 4.163 28 C -0.094 4.094 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.229 0.771 37 H 0.231 0.769 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.866 -8.694 8.893 15.273 hybrid contribution -0.005 0.904 0.182 0.922 sum -8.871 -7.790 9.074 14.890 Atomic orbital electron populations 1.69525 1.05733 1.26136 1.51748 1.24853 0.94886 0.99009 0.95086 0.86573 0.80202 0.83316 0.77965 1.20781 1.21378 1.19915 1.21025 0.93833 0.89606 1.46247 0.92120 1.17659 0.92019 0.97061 0.86523 0.94519 1.21996 1.01014 1.03178 0.91098 1.20951 0.87686 0.73854 0.84183 1.90629 1.14217 1.48442 1.86478 1.48703 1.06252 1.76424 1.05971 1.21872 0.82273 1.02372 0.95140 1.22638 0.95659 1.01751 0.95622 1.22490 0.98753 1.02573 0.91282 0.87200 1.20346 0.80829 0.79296 0.88112 1.43854 1.34937 1.52294 1.10909 1.90784 1.33464 1.35784 1.81083 1.21810 0.95105 1.00767 0.81966 1.20359 0.93133 0.92902 0.96725 1.20932 0.99198 1.01861 0.92978 1.20804 0.95553 1.02684 0.97030 1.20787 0.95977 1.02726 0.97709 1.21085 0.99409 1.01670 0.94093 1.21620 0.94804 0.94914 0.98080 0.92891 0.93211 0.84511 0.90791 0.91368 0.89600 0.90239 0.77056 0.76896 0.90435 0.90747 0.87612 0.88072 0.88295 0.88064 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.68 7.74 55.43 0.43 -22.25 16 2 C 0.06 1.62 5.14 -17.82 -0.09 1.53 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.47 -12.79 7.27 -34.44 -0.25 -13.04 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.09 2.10 1.98 -92.92 -0.18 1.92 16 10 H 0.04 0.91 7.89 -51.93 -0.41 0.50 16 11 C -0.13 -2.87 3.41 -27.88 -0.10 -2.97 16 12 C 0.54 11.92 7.60 -10.99 -0.08 11.84 16 13 O -0.52 -13.58 15.24 5.55 0.08 -13.49 16 14 N -0.63 -11.04 3.33 -170.53 -0.57 -11.60 16 15 C 0.11 1.36 6.49 -3.06 -0.02 1.34 16 16 C -0.12 -1.07 6.41 -24.90 -0.16 -1.23 16 17 C -0.13 -1.36 3.43 -89.64 -0.31 -1.67 16 18 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 19 C 0.53 5.86 7.42 -10.99 -0.08 5.77 16 20 N -0.86 -5.35 8.87 31.22 0.28 -5.08 16 21 O -0.54 -8.59 16.56 5.56 0.09 -8.50 16 22 C 0.13 2.02 6.02 -2.54 -0.02 2.00 16 23 C -0.03 -0.70 4.68 -104.62 -0.49 -1.19 16 24 C -0.13 -2.81 9.70 -39.58 -0.38 -3.19 16 25 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 26 C -0.15 -2.88 10.05 -39.58 -0.40 -3.27 16 27 C -0.14 -2.84 10.05 -39.58 -0.40 -3.24 16 28 C -0.08 -1.65 7.56 -39.58 -0.30 -1.95 16 29 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.14 3.12 4.65 -51.93 -0.24 2.88 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 36 H 0.40 1.23 8.83 -40.82 -0.36 0.87 16 37 H 0.40 2.16 8.93 -40.82 -0.36 1.80 16 38 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 39 H 0.07 1.34 7.40 -51.93 -0.38 0.95 16 40 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.15 3.31 4.97 -52.48 -0.26 3.05 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -33.41 357.65 -9.18 -42.58 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.21 Total: 6.62 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.65 Total: -10.48 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.14 Total: -38.93 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.18 Total: -21.99 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.41 -9.18 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355666544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.187 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds