Wall clock time and date at job start Tue Mar 31 2020 11:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48494 * 109.47559 * 270.00387 * 3 2 1 5 5 H 1.48506 * 109.46987 * 30.00427 * 3 2 1 6 6 H 1.48492 * 109.47018 * 149.99876 * 3 2 1 7 7 C 1.37875 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00189 * 186.16881 * 7 2 1 9 9 C 1.50699 * 119.99721 * 6.17370 * 7 2 1 10 10 H 1.09001 * 109.47126 * 181.36761 * 9 7 2 11 11 C 1.53003 * 109.47329 * 301.36578 * 9 7 2 12 12 C 1.50705 * 109.46982 * 295.00322 * 11 9 7 13 13 O 1.21285 * 119.99676 * 359.97438 * 12 11 9 14 14 N 1.34770 * 119.99935 * 179.97438 * 12 11 9 15 15 C 1.47024 * 125.64975 * 359.69441 * 14 12 11 16 16 C 1.54322 * 107.27106 * 179.20403 * 15 14 12 17 17 C 1.55150 * 102.94504 * 337.80595 * 16 15 14 18 18 H 1.09004 * 111.00524 * 277.43504 * 17 16 15 19 19 C 1.50692 * 111.00665 * 153.57825 * 17 16 15 20 20 N 1.34775 * 120.00241 * 67.80712 * 19 17 16 21 21 O 1.21283 * 119.99824 * 247.80365 * 19 17 16 22 22 C 1.47424 * 125.64932 * 179.97438 * 14 12 11 23 23 C 1.50704 * 109.47541 * 61.36732 * 9 7 2 24 24 C 1.38235 * 119.99627 * 91.36514 * 23 9 7 25 25 C 1.38238 * 119.99462 * 179.81242 * 24 23 9 26 26 C 1.38243 * 120.00168 * 0.42010 * 25 24 23 27 27 C 1.38240 * 119.99743 * 359.81624 * 26 25 24 28 28 C 1.38230 * 119.99807 * 271.64642 * 23 9 7 29 29 H 0.97005 * 120.00187 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47345 * 175.00614 * 11 9 7 31 31 H 1.08998 * 109.46808 * 54.99628 * 11 9 7 32 32 H 1.09003 * 109.88099 * 298.62141 * 15 14 12 33 33 H 1.08997 * 109.88184 * 59.78535 * 15 14 12 34 34 H 1.09003 * 110.71532 * 219.43930 * 16 15 14 35 35 H 1.08997 * 110.87470 * 96.24370 * 16 15 14 36 36 H 0.97002 * 119.99988 * 359.97438 * 20 19 17 37 37 H 0.96994 * 120.00056 * 180.02562 * 20 19 17 38 38 H 1.09003 * 110.36709 * 322.70186 * 22 14 12 39 39 H 1.09004 * 110.36869 * 84.91263 * 22 14 12 40 40 H 1.07997 * 120.00318 * 0.02562 * 24 23 9 41 41 H 1.07997 * 119.99953 * 180.21067 * 25 24 23 42 42 H 1.07998 * 120.00012 * 179.79136 * 26 25 24 43 43 H 1.07997 * 119.99967 * 179.97438 * 27 26 25 44 44 H 1.08003 * 120.00549 * 359.97401 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.1000 9 6 1.2576 -2.4952 -0.1415 10 1 1.9624 -3.3255 -0.0961 11 6 0.2417 -2.6259 0.9952 12 6 0.9700 -2.7247 2.3109 13 8 2.1822 -2.6941 2.3368 14 7 0.2742 -2.8470 3.4586 15 6 -1.1910 -2.8906 3.5720 16 6 -1.5300 -3.0578 5.0682 17 6 -0.2286 -3.6669 5.6535 18 1 -0.1975 -4.7454 5.4979 19 6 -0.0841 -3.3298 7.1151 20 7 -0.9379 -3.8557 8.0156 21 8 0.8006 -2.5853 7.4810 22 6 0.8562 -2.9534 4.8089 23 6 0.5368 -2.5200 -1.4647 24 6 1.1566 -3.0531 -2.5794 25 6 0.4939 -3.0793 -3.7923 26 6 -0.7853 -2.5647 -3.8924 27 6 -1.4031 -2.0272 -2.7787 28 6 -0.7419 -2.0045 -1.5650 29 1 -0.4851 0.8401 0.0004 30 1 -0.3590 -3.5228 0.8443 31 1 -0.4078 -1.7506 1.0043 32 1 -1.6197 -1.9615 3.1963 33 1 -1.5815 -3.7367 3.0066 34 1 -2.3688 -3.7414 5.1994 35 1 -1.7450 -2.0932 5.5279 36 1 -1.6456 -4.4509 7.7228 37 1 -0.8451 -3.6384 8.9563 38 1 1.7690 -3.5485 4.7828 39 1 1.0620 -1.9620 5.2126 40 1 2.1571 -3.4521 -2.5020 41 1 0.9767 -3.4989 -4.6625 42 1 -1.3017 -2.5822 -4.8408 43 1 -2.4022 -1.6248 -2.8570 44 1 -1.2245 -1.5843 -0.6950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355666544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:03 Heat of formation + Delta-G solvation = -69.023817 kcal Electronic energy + Delta-G solvation = -26618.122018 eV Core-core repulsion = 22920.094768 eV Total energy + Delta-G solvation = -3698.027250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36040 -40.37400 -39.62459 -37.94714 -36.02542 -34.73256 -33.06100 -32.54759 -31.38588 -30.37276 -29.75732 -27.84286 -25.41679 -23.94375 -23.32710 -22.91867 -21.47029 -20.94357 -19.99769 -18.55480 -18.35225 -17.90373 -17.80800 -17.14050 -16.88803 -16.43666 -16.09397 -15.76070 -15.42677 -15.23804 -15.13196 -14.65741 -14.53719 -14.30631 -13.90935 -13.75035 -13.58070 -13.35927 -13.14499 -13.08927 -12.82960 -12.75275 -12.68640 -12.29651 -12.18394 -11.90624 -11.81068 -11.73719 -11.08979 -11.06833 -10.99959 -10.65999 -10.55948 -10.34011 -9.50348 -9.39397 -9.11061 -7.98279 -6.11401 0.88396 0.99740 1.34165 1.36153 1.45649 1.57404 1.98501 2.09098 2.43558 2.70417 3.17688 3.31283 3.36758 3.56168 3.96101 4.16729 4.28553 4.33289 4.34564 4.39406 4.42953 4.52421 4.65567 4.71983 4.79091 4.86427 4.88863 4.93545 4.99031 5.08728 5.15210 5.18344 5.33900 5.53061 5.56700 5.64399 5.69743 5.90749 5.92170 5.95613 6.11450 6.37513 6.42525 6.46402 6.58226 6.71969 6.83360 7.35320 7.49949 7.54402 8.91757 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.003837 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.021152 B = 7294.811758 C = 8204.592442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.293 1.293 7 C -0.494 4.494 8 H 0.024 0.976 9 C 0.087 3.913 10 H 0.011 0.989 11 C -0.118 4.118 12 C 0.532 3.468 13 O -0.580 6.580 14 N -0.632 5.632 15 C 0.094 3.906 16 C -0.102 4.102 17 C -0.112 4.112 18 H 0.142 0.858 19 C 0.530 3.470 20 N -0.826 5.826 21 O -0.596 6.596 22 C 0.119 3.881 23 C -0.054 4.054 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.088 4.088 29 H 0.263 0.737 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.076 0.924 36 H 0.422 0.578 37 H 0.409 0.591 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 -10.564 8.523 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.163 4.163 3 Si 0.755 3.245 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.219 1.219 7 C -0.532 4.532 8 H 0.043 0.957 9 C 0.068 3.932 10 H 0.030 0.970 11 C -0.158 4.158 12 C 0.323 3.677 13 O -0.459 6.459 14 N -0.368 5.368 15 C -0.028 4.028 16 C -0.140 4.140 17 C -0.134 4.134 18 H 0.160 0.840 19 C 0.315 3.685 20 N -0.390 5.390 21 O -0.476 6.476 22 C -0.004 4.004 23 C -0.055 4.055 24 C -0.170 4.170 25 C -0.158 4.158 26 C -0.165 4.165 27 C -0.164 4.164 28 C -0.106 4.106 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.159 0.841 35 H 0.095 0.905 36 H 0.254 0.746 37 H 0.241 0.759 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.146 0.854 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.875 -9.918 8.513 18.346 hybrid contribution 1.165 1.216 0.304 1.711 sum -11.710 -8.701 8.816 17.046 Atomic orbital electron populations 1.69600 1.05295 1.26378 1.50889 1.25176 0.95794 1.00133 0.95151 0.86046 0.78844 0.81768 0.77880 1.20288 1.20169 1.21866 1.20966 0.92413 0.91783 1.48055 0.95748 1.17548 0.92261 0.94628 0.88793 0.97005 1.21776 1.00047 1.03790 0.90165 1.21088 0.87199 0.73672 0.85705 1.90595 1.16503 1.51253 1.87517 1.48647 1.08638 1.74231 1.05263 1.22280 0.78888 1.03115 0.98500 1.22691 0.96180 1.02985 0.92147 1.22395 0.97117 1.03684 0.90212 0.84006 1.20380 0.80668 0.78769 0.88695 1.43581 1.33861 1.50946 1.10650 1.90777 1.36241 1.38752 1.81873 1.21828 0.96724 0.99708 0.82183 1.20281 0.94063 0.94911 0.96218 1.21105 0.99510 1.02558 0.93843 1.21161 0.95863 1.01820 0.96939 1.21229 0.95605 1.00782 0.98899 1.21402 1.00500 1.01107 0.93414 1.21551 0.94508 0.95553 0.99002 0.92655 0.90684 0.85321 0.91617 0.88806 0.84147 0.90519 0.74593 0.75922 0.92604 0.93726 0.87957 0.84972 0.84508 0.85383 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.25 7.74 21.45 0.17 -45.08 16 2 C 0.04 2.02 5.14 84.65 0.44 2.45 16 3 Si 0.93 45.83 29.54 68.60 2.03 47.85 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 7 C -0.49 -28.53 7.27 25.60 0.19 -28.34 16 8 H 0.02 1.53 7.82 -2.91 -0.02 1.50 16 9 C 0.09 4.43 1.98 -12.28 -0.02 4.41 16 10 H 0.01 0.62 7.89 -2.39 -0.02 0.60 16 11 C -0.12 -5.25 3.41 29.85 0.10 -5.15 16 12 C 0.53 24.59 7.60 87.66 0.67 25.26 16 13 O -0.58 -32.48 15.24 -3.05 -0.05 -32.53 16 14 N -0.63 -22.42 3.33 -811.82 -2.70 -25.12 16 15 C 0.09 2.20 6.49 86.73 0.56 2.76 16 16 C -0.10 -1.47 6.41 31.78 0.20 -1.27 16 17 C -0.11 -2.14 3.43 -10.16 -0.03 -2.17 16 18 H 0.14 1.86 8.14 -2.38 -0.02 1.85 16 19 C 0.53 10.89 7.42 87.65 0.65 11.54 16 20 N -0.83 -7.61 8.87 -173.54 -1.54 -9.15 16 21 O -0.60 -19.50 16.56 -3.04 -0.05 -19.55 16 22 C 0.12 3.95 6.02 86.85 0.52 4.47 16 23 C -0.05 -2.52 4.68 -19.87 -0.09 -2.61 16 24 C -0.15 -6.49 9.70 22.27 0.22 -6.28 16 25 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 26 C -0.15 -4.95 10.05 22.27 0.22 -4.73 16 27 C -0.15 -5.34 10.05 22.27 0.22 -5.12 16 28 C -0.09 -3.76 7.56 22.27 0.17 -3.59 16 29 H 0.26 13.00 8.31 -92.70 -0.77 12.23 16 30 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.13 5.98 4.65 -2.39 -0.01 5.97 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 1.21 8.03 -2.39 -0.02 1.19 16 36 H 0.42 0.56 8.83 -92.71 -0.82 -0.26 16 37 H 0.41 3.24 8.93 -92.71 -0.83 2.42 16 38 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 39 H 0.04 1.73 7.40 -2.39 -0.02 1.72 16 40 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 42 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 43 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 44 H 0.14 6.12 4.97 -2.91 -0.01 6.11 16 Total: -1.00 -80.04 357.65 1.48 -78.56 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.61 Total: 18.17 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.23 Total: -13.14 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -4.07 Total: -79.36 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.10 Total: -52.08 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -80.04 1.48 -78.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355666544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.538 kcal (2) G-P(sol) polarization free energy of solvation -80.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds