Wall clock time and date at job start Tue Mar 31 2020 11:03:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31523 * 1
3 3 Si 1.86805 * 119.99722 * 2 1
4 4 H 1.48496 * 109.47056 * 270.00003 * 3 2 1
5 5 H 1.48499 * 109.47020 * 29.99488 * 3 2 1
6 6 H 1.48497 * 109.46734 * 149.99508 * 3 2 1
7 7 C 1.37872 * 119.99971 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00193 * 359.97438 * 7 2 1
9 9 C 1.50697 * 119.99767 * 180.02562 * 7 2 1
10 10 C 1.52999 * 109.47166 * 179.97438 * 9 7 2
11 11 C 1.50700 * 109.47354 * 179.97438 * 10 9 7
12 12 O 1.21283 * 119.99940 * 359.97438 * 11 10 9
13 13 N 1.34776 * 120.00212 * 179.97438 * 11 10 9
14 14 C 1.47268 * 121.35197 * 359.97438 * 13 11 10
15 15 C 1.52996 * 108.18802 * 118.47461 * 14 13 11
16 16 N 1.45646 * 110.76944 * 46.72374 * 15 14 13
17 17 C 1.33384 * 124.59341 * 338.10502 * 16 15 14
18 18 O 1.21279 * 118.48587 * 184.29621 * 17 16 15
19 19 C 1.47049 * 121.35546 * 179.97438 * 13 11 10
20 20 H 1.08999 * 109.56696 * 342.58860 * 19 13 11
21 21 C 1.53000 * 109.56693 * 102.93490 * 19 13 11
22 22 C 1.50703 * 109.47566 * 295.00503 * 21 19 13
23 23 C 1.38233 * 119.99619 * 269.72840 * 22 21 19
24 24 C 1.38240 * 119.99729 * 179.78583 * 23 22 21
25 25 C 1.38230 * 119.99727 * 0.45761 * 24 23 22
26 26 C 1.38231 * 120.00391 * 359.77556 * 25 24 23
27 27 C 1.38232 * 119.99946 * 0.02562 * 26 25 24
28 28 H 0.97001 * 119.99653 * 0.02562 * 1 2 3
29 29 H 1.09000 * 109.47600 * 59.99619 * 9 7 2
30 30 H 1.09006 * 109.46687 * 299.99672 * 9 7 2
31 31 H 1.09000 * 109.47057 * 59.99427 * 10 9 7
32 32 H 1.08998 * 109.46850 * 299.99583 * 10 9 7
33 33 H 1.09002 * 109.72112 * 358.80415 * 14 13 11
34 34 H 1.09000 * 109.72389 * 238.15158 * 14 13 11
35 35 H 1.08999 * 109.21715 * 167.06036 * 15 14 13
36 36 H 1.08996 * 109.21351 * 286.39472 * 15 14 13
37 37 H 0.97004 * 117.70190 * 158.09739 * 16 15 14
38 38 H 1.09006 * 109.46836 * 55.00076 * 21 19 13
39 39 H 1.08996 * 109.47349 * 174.99669 * 21 19 13
40 40 H 1.07999 * 119.99839 * 359.97438 * 23 22 21
41 41 H 1.08003 * 119.99912 * 180.25464 * 24 23 22
42 42 H 1.08000 * 119.99938 * 179.78905 * 25 24 23
43 43 H 1.08002 * 119.99822 * 180.02562 * 26 25 24
44 44 H 1.07998 * 119.99969 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1294 -0.0005
9 6 3.5116 -1.1940 0.0000
10 6 4.0216 -2.6364 -0.0001
11 6 5.5286 -2.6364 -0.0001
12 8 6.1350 -1.5861 -0.0005
13 7 6.2025 -3.8036 0.0003
14 6 5.4966 -5.0960 0.0014
15 6 5.8753 -5.8481 -1.2760
16 7 7.3151 -5.8079 -1.4914
17 6 8.1342 -4.8953 -0.9666
18 8 9.3049 -4.9190 -1.2824
19 6 7.6726 -3.8383 -0.0003
20 1 8.0606 -2.8674 -0.3084
21 6 8.1779 -4.1722 1.4047
22 6 7.8068 -3.0586 2.3499
23 6 8.6746 -2.0006 2.5460
24 6 8.3324 -0.9769 3.4096
25 6 7.1265 -1.0160 4.0843
26 6 6.2609 -2.0763 3.8919
27 6 6.6013 -3.0980 3.0252
28 1 -0.4850 0.8401 -0.0004
29 1 3.8746 -0.6807 0.8905
30 1 3.8752 -0.6795 -0.8895
31 1 3.6586 -3.1501 -0.8903
32 1 3.6580 -3.1504 0.8897
33 1 4.4199 -4.9270 0.0231
34 1 5.7957 -5.6779 0.8732
35 1 5.5541 -6.8861 -1.1898
36 1 5.3723 -5.3872 -2.1261
37 1 7.7059 -6.4930 -2.0561
38 1 7.7221 -5.1028 1.7431
39 1 9.2618 -4.2851 1.3838
40 1 9.6187 -1.9724 2.0221
41 1 9.0086 -0.1482 3.5597
42 1 6.8606 -0.2179 4.7616
43 1 5.3185 -2.1065 4.4187
44 1 5.9251 -3.9266 2.8751
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000360782220.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:15
Heat of formation + Delta-G solvation = -45.830904 kcal
Electronic energy + Delta-G solvation = -27265.557134 eV
Core-core repulsion = 23568.535604 eV
Total energy + Delta-G solvation = -3697.021530 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.06950 -39.12538 -38.79707 -36.60488 -34.84001 -33.61033 -32.82277 -31.29003
-30.75131 -30.04239 -28.45565 -26.20764 -24.74440 -23.96976 -22.46209 -21.52941
-21.14702 -19.66957 -18.62901 -17.69088 -17.34722 -16.76652 -16.65583 -16.27962
-15.74549 -15.18438 -15.10584 -15.02137 -14.71820 -14.16773 -14.04219 -13.79634
-13.55340 -13.24735 -12.89275 -12.80611 -12.63427 -12.53785 -12.34259 -12.09444
-12.01420 -11.64433 -11.40741 -11.04263 -11.00894 -10.87431 -10.35175 -10.17585
-10.08590 -9.81678 -9.42324 -9.28572 -9.20077 -8.87209 -8.74894 -8.54404
-8.43782 -6.06867 -4.05724 1.45472 1.56458 2.35200 2.73574 2.98514
3.09174 3.35312 3.42359 3.53418 3.90322 4.18708 4.43675 4.47874
4.71889 4.77301 4.81794 4.92488 5.02720 5.08809 5.13301 5.18407
5.25502 5.29082 5.31065 5.44399 5.53881 5.62791 5.68661 5.79696
5.93542 5.98544 6.13294 6.16056 6.23260 6.49684 6.58628 6.59086
6.66712 6.70547 6.98263 7.14462 7.31817 7.39102 7.45004 7.74794
7.90146 8.43043 8.53179 8.95472 9.56560 11.05809
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.011466 B = 0.005051 C = 0.003936
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2441.455802 B = 5542.670785 C = 7112.501153
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.071 3.929
3 Si 0.874 3.126
4 H -0.277 1.277
5 H -0.288 1.288
6 H -0.261 1.261
7 C -0.524 4.524
8 H 0.072 0.928
9 C 0.003 3.997
10 C -0.119 4.119
11 C 0.519 3.481
12 O -0.520 6.520
13 N -0.623 5.623
14 C 0.090 3.910
15 C 0.093 3.907
16 N -0.716 5.716
17 C 0.521 3.479
18 O -0.548 6.548
19 C 0.138 3.862
20 H 0.128 0.872
21 C -0.078 4.078
22 C -0.077 4.077
23 C -0.110 4.110
24 C -0.117 4.117
25 C -0.119 4.119
26 C -0.113 4.113
27 C -0.105 4.105
28 H 0.263 0.737
29 H 0.024 0.976
30 H 0.018 0.982
31 H 0.085 0.915
32 H 0.086 0.914
33 H 0.114 0.886
34 H 0.078 0.922
35 H 0.090 0.910
36 H 0.074 0.926
37 H 0.399 0.601
38 H 0.076 0.924
39 H 0.089 0.911
40 H 0.118 0.882
41 H 0.118 0.882
42 H 0.118 0.882
43 H 0.121 0.879
44 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.392 -13.752 4.122 20.328
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.542 5.542
2 C -0.130 4.130
3 Si 0.701 3.299
4 H -0.203 1.203
5 H -0.214 1.214
6 H -0.185 1.185
7 C -0.562 4.562
8 H 0.090 0.910
9 C -0.035 4.035
10 C -0.158 4.158
11 C 0.310 3.690
12 O -0.394 6.394
13 N -0.361 5.361
14 C -0.034 4.034
15 C -0.032 4.032
16 N -0.368 5.368
17 C 0.306 3.694
18 O -0.425 6.425
19 C 0.031 3.969
20 H 0.146 0.854
21 C -0.117 4.117
22 C -0.077 4.077
23 C -0.128 4.128
24 C -0.135 4.135
25 C -0.137 4.137
26 C -0.131 4.131
27 C -0.123 4.123
28 H 0.073 0.927
29 H 0.042 0.958
30 H 0.036 0.964
31 H 0.103 0.897
32 H 0.104 0.896
33 H 0.132 0.868
34 H 0.096 0.904
35 H 0.109 0.891
36 H 0.093 0.907
37 H 0.234 0.766
38 H 0.095 0.905
39 H 0.108 0.892
40 H 0.136 0.864
41 H 0.136 0.864
42 H 0.136 0.864
43 H 0.139 0.861
44 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 15.047 -12.842 4.098 20.202
hybrid contribution 0.229 0.546 -0.353 0.689
sum 15.276 -12.296 3.745 19.964
Atomic orbital electron populations
1.69909 1.06272 1.26986 1.50997 1.24944 0.94666 0.99150 0.94283
0.86840 0.80695 0.83528 0.78790 1.20270 1.21429 1.18478 1.21071
0.89173 0.94498 1.51464 0.90953 1.19362 0.96422 0.90013 0.97692
1.21691 0.87666 1.03467 1.03011 1.21536 0.91449 0.81995 0.74049
1.90683 1.70426 1.30585 1.47703 1.48472 1.04739 1.06518 1.76409
1.22086 0.99862 0.84486 0.96947 1.21829 0.80398 1.01824 0.99141
1.45361 1.08499 1.31235 1.51729 1.20316 0.85803 0.82070 0.81168
1.90773 1.17400 1.73460 1.60853 1.21233 0.82081 0.99641 0.93988
0.85401 1.20785 1.02099 0.97202 0.91572 1.19490 0.94977 0.95948
0.97287 1.20948 0.99426 0.94017 0.98382 1.21058 0.97033 0.98257
0.97156 1.21119 0.94448 0.98176 0.99965 1.21130 0.99229 0.94259
0.98463 1.20913 0.95739 0.98986 0.96684 0.92703 0.95753 0.96389
0.89709 0.89587 0.86761 0.90380 0.89134 0.90735 0.76557 0.90524
0.89212 0.86418 0.86411 0.86376 0.86070 0.86661
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16
2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16
3 Si 0.87 22.31 27.47 -169.99 -4.67 17.64 16
4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16
5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
6 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16
7 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16
8 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16
9 C 0.00 0.07 3.33 -27.88 -0.09 -0.02 16
10 C -0.12 -2.13 4.01 -27.88 -0.11 -2.24 16
11 C 0.52 8.86 6.69 -10.99 -0.07 8.78 16
12 O -0.52 -11.03 15.54 5.55 0.09 -10.95 16
13 N -0.62 -7.85 2.13 -166.53 -0.35 -8.21 16
14 C 0.09 0.74 6.31 -3.62 -0.02 0.72 16
15 C 0.09 0.63 7.34 -4.50 -0.03 0.60 16
16 N -0.72 -6.42 5.42 -61.31 -0.33 -6.75 16
17 C 0.52 6.48 7.10 -11.72 -0.08 6.40 16
18 O -0.55 -8.58 17.80 5.56 0.10 -8.48 16
19 C 0.14 1.77 2.45 -68.90 -0.17 1.60 16
20 H 0.13 2.00 7.23 -51.93 -0.38 1.63 16
21 C -0.08 -0.87 4.92 -27.88 -0.14 -1.01 16
22 C -0.08 -1.00 4.72 -104.62 -0.49 -1.50 16
23 C -0.11 -1.46 9.70 -39.58 -0.38 -1.84 16
24 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16
25 C -0.12 -1.62 10.05 -39.59 -0.40 -2.01 16
26 C -0.11 -1.56 10.05 -39.59 -0.40 -1.96 16
27 C -0.11 -1.40 8.62 -39.58 -0.34 -1.74 16
28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
29 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16
30 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16
31 H 0.08 1.38 7.88 -51.93 -0.41 0.97 16
32 H 0.09 1.39 7.83 -51.93 -0.41 0.99 16
33 H 0.11 0.88 6.03 -51.93 -0.31 0.57 16
34 H 0.08 0.51 7.40 -51.93 -0.38 0.13 16
35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16
36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.40 2.99 8.80 -40.82 -0.36 2.63 16
38 H 0.08 0.72 7.30 -51.93 -0.38 0.34 16
39 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16
40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16
41 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16
42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16
43 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16
44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16
LS Contribution 361.63 15.07 5.45 5.45
Total: -1.00 -35.98 361.63 -8.87 -44.84
By element:
Atomic # 1 Polarization: 8.43 SS G_CDS: -6.35 Total: 2.07 kcal
Atomic # 6 Polarization: -5.43 SS G_CDS: -3.57 Total: -8.99 kcal
Atomic # 7 Polarization: -41.68 SS G_CDS: 0.09 Total: -41.59 kcal
Atomic # 8 Polarization: -19.61 SS G_CDS: 0.19 Total: -19.43 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -35.98 -8.87 -44.84 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000360782220.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.989 kcal
(2) G-P(sol) polarization free energy of solvation -35.975 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.964 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.831 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds