Wall clock time and date at job start Tue Mar 31 2020 11:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86805 * 119.99722 * 2 1 4 4 H 1.48496 * 109.47056 * 270.00003 * 3 2 1 5 5 H 1.48499 * 109.47020 * 29.99488 * 3 2 1 6 6 H 1.48497 * 109.46734 * 149.99508 * 3 2 1 7 7 C 1.37872 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00193 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99767 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47354 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99940 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00212 * 179.97438 * 11 10 9 14 14 C 1.47268 * 121.35197 * 359.97438 * 13 11 10 15 15 C 1.52996 * 108.18802 * 118.47461 * 14 13 11 16 16 N 1.45646 * 110.76944 * 46.72374 * 15 14 13 17 17 C 1.33384 * 124.59341 * 338.10502 * 16 15 14 18 18 O 1.21279 * 118.48587 * 184.29621 * 17 16 15 19 19 C 1.47049 * 121.35546 * 179.97438 * 13 11 10 20 20 H 1.08999 * 109.56696 * 342.58860 * 19 13 11 21 21 C 1.53000 * 109.56693 * 102.93490 * 19 13 11 22 22 C 1.50703 * 109.47566 * 295.00503 * 21 19 13 23 23 C 1.38233 * 119.99619 * 269.72840 * 22 21 19 24 24 C 1.38240 * 119.99729 * 179.78583 * 23 22 21 25 25 C 1.38230 * 119.99727 * 0.45761 * 24 23 22 26 26 C 1.38231 * 120.00391 * 359.77556 * 25 24 23 27 27 C 1.38232 * 119.99946 * 0.02562 * 26 25 24 28 28 H 0.97001 * 119.99653 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47600 * 59.99619 * 9 7 2 30 30 H 1.09006 * 109.46687 * 299.99672 * 9 7 2 31 31 H 1.09000 * 109.47057 * 59.99427 * 10 9 7 32 32 H 1.08998 * 109.46850 * 299.99583 * 10 9 7 33 33 H 1.09002 * 109.72112 * 358.80415 * 14 13 11 34 34 H 1.09000 * 109.72389 * 238.15158 * 14 13 11 35 35 H 1.08999 * 109.21715 * 167.06036 * 15 14 13 36 36 H 1.08996 * 109.21351 * 286.39472 * 15 14 13 37 37 H 0.97004 * 117.70190 * 158.09739 * 16 15 14 38 38 H 1.09006 * 109.46836 * 55.00076 * 21 19 13 39 39 H 1.08996 * 109.47349 * 174.99669 * 21 19 13 40 40 H 1.07999 * 119.99839 * 359.97438 * 23 22 21 41 41 H 1.08003 * 119.99912 * 180.25464 * 24 23 22 42 42 H 1.08000 * 119.99938 * 179.78905 * 25 24 23 43 43 H 1.08002 * 119.99822 * 180.02562 * 26 25 24 44 44 H 1.07998 * 119.99969 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5286 -2.6364 -0.0001 12 8 6.1350 -1.5861 -0.0005 13 7 6.2025 -3.8036 0.0003 14 6 5.4966 -5.0960 0.0014 15 6 5.8753 -5.8481 -1.2760 16 7 7.3151 -5.8079 -1.4914 17 6 8.1342 -4.8953 -0.9666 18 8 9.3049 -4.9190 -1.2824 19 6 7.6726 -3.8383 -0.0003 20 1 8.0606 -2.8674 -0.3084 21 6 8.1779 -4.1722 1.4047 22 6 7.8068 -3.0586 2.3499 23 6 8.6746 -2.0006 2.5460 24 6 8.3324 -0.9769 3.4096 25 6 7.1265 -1.0160 4.0843 26 6 6.2609 -2.0763 3.8919 27 6 6.6013 -3.0980 3.0252 28 1 -0.4850 0.8401 -0.0004 29 1 3.8746 -0.6807 0.8905 30 1 3.8752 -0.6795 -0.8895 31 1 3.6586 -3.1501 -0.8903 32 1 3.6580 -3.1504 0.8897 33 1 4.4199 -4.9270 0.0231 34 1 5.7957 -5.6779 0.8732 35 1 5.5541 -6.8861 -1.1898 36 1 5.3723 -5.3872 -2.1261 37 1 7.7059 -6.4930 -2.0561 38 1 7.7221 -5.1028 1.7431 39 1 9.2618 -4.2851 1.3838 40 1 9.6187 -1.9724 2.0221 41 1 9.0086 -0.1482 3.5597 42 1 6.8606 -0.2179 4.7616 43 1 5.3185 -2.1065 4.4187 44 1 5.9251 -3.9266 2.8751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360782220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:15 Heat of formation + Delta-G solvation = -45.830904 kcal Electronic energy + Delta-G solvation = -27265.557134 eV Core-core repulsion = 23568.535604 eV Total energy + Delta-G solvation = -3697.021530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06950 -39.12538 -38.79707 -36.60488 -34.84001 -33.61033 -32.82277 -31.29003 -30.75131 -30.04239 -28.45565 -26.20764 -24.74440 -23.96976 -22.46209 -21.52941 -21.14702 -19.66957 -18.62901 -17.69088 -17.34722 -16.76652 -16.65583 -16.27962 -15.74549 -15.18438 -15.10584 -15.02137 -14.71820 -14.16773 -14.04219 -13.79634 -13.55340 -13.24735 -12.89275 -12.80611 -12.63427 -12.53785 -12.34259 -12.09444 -12.01420 -11.64433 -11.40741 -11.04263 -11.00894 -10.87431 -10.35175 -10.17585 -10.08590 -9.81678 -9.42324 -9.28572 -9.20077 -8.87209 -8.74894 -8.54404 -8.43782 -6.06867 -4.05724 1.45472 1.56458 2.35200 2.73574 2.98514 3.09174 3.35312 3.42359 3.53418 3.90322 4.18708 4.43675 4.47874 4.71889 4.77301 4.81794 4.92488 5.02720 5.08809 5.13301 5.18407 5.25502 5.29082 5.31065 5.44399 5.53881 5.62791 5.68661 5.79696 5.93542 5.98544 6.13294 6.16056 6.23260 6.49684 6.58628 6.59086 6.66712 6.70547 6.98263 7.14462 7.31817 7.39102 7.45004 7.74794 7.90146 8.43043 8.53179 8.95472 9.56560 11.05809 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.005051 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.455802 B = 5542.670785 C = 7112.501153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.119 4.119 11 C 0.519 3.481 12 O -0.520 6.520 13 N -0.623 5.623 14 C 0.090 3.910 15 C 0.093 3.907 16 N -0.716 5.716 17 C 0.521 3.479 18 O -0.548 6.548 19 C 0.138 3.862 20 H 0.128 0.872 21 C -0.078 4.078 22 C -0.077 4.077 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.113 4.113 27 C -0.105 4.105 28 H 0.263 0.737 29 H 0.024 0.976 30 H 0.018 0.982 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.392 -13.752 4.122 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.035 4.035 10 C -0.158 4.158 11 C 0.310 3.690 12 O -0.394 6.394 13 N -0.361 5.361 14 C -0.034 4.034 15 C -0.032 4.032 16 N -0.368 5.368 17 C 0.306 3.694 18 O -0.425 6.425 19 C 0.031 3.969 20 H 0.146 0.854 21 C -0.117 4.117 22 C -0.077 4.077 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.131 4.131 27 C -0.123 4.123 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.047 -12.842 4.098 20.202 hybrid contribution 0.229 0.546 -0.353 0.689 sum 15.276 -12.296 3.745 19.964 Atomic orbital electron populations 1.69909 1.06272 1.26986 1.50997 1.24944 0.94666 0.99150 0.94283 0.86840 0.80695 0.83528 0.78790 1.20270 1.21429 1.18478 1.21071 0.89173 0.94498 1.51464 0.90953 1.19362 0.96422 0.90013 0.97692 1.21691 0.87666 1.03467 1.03011 1.21536 0.91449 0.81995 0.74049 1.90683 1.70426 1.30585 1.47703 1.48472 1.04739 1.06518 1.76409 1.22086 0.99862 0.84486 0.96947 1.21829 0.80398 1.01824 0.99141 1.45361 1.08499 1.31235 1.51729 1.20316 0.85803 0.82070 0.81168 1.90773 1.17400 1.73460 1.60853 1.21233 0.82081 0.99641 0.93988 0.85401 1.20785 1.02099 0.97202 0.91572 1.19490 0.94977 0.95948 0.97287 1.20948 0.99426 0.94017 0.98382 1.21058 0.97033 0.98257 0.97156 1.21119 0.94448 0.98176 0.99965 1.21130 0.99229 0.94259 0.98463 1.20913 0.95739 0.98986 0.96684 0.92703 0.95753 0.96389 0.89709 0.89587 0.86761 0.90380 0.89134 0.90735 0.76557 0.90524 0.89212 0.86418 0.86411 0.86376 0.86070 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 22.31 27.47 -169.99 -4.67 17.64 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 7 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 8 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 9 C 0.00 0.07 3.33 -27.88 -0.09 -0.02 16 10 C -0.12 -2.13 4.01 -27.88 -0.11 -2.24 16 11 C 0.52 8.86 6.69 -10.99 -0.07 8.78 16 12 O -0.52 -11.03 15.54 5.55 0.09 -10.95 16 13 N -0.62 -7.85 2.13 -166.53 -0.35 -8.21 16 14 C 0.09 0.74 6.31 -3.62 -0.02 0.72 16 15 C 0.09 0.63 7.34 -4.50 -0.03 0.60 16 16 N -0.72 -6.42 5.42 -61.31 -0.33 -6.75 16 17 C 0.52 6.48 7.10 -11.72 -0.08 6.40 16 18 O -0.55 -8.58 17.80 5.56 0.10 -8.48 16 19 C 0.14 1.77 2.45 -68.90 -0.17 1.60 16 20 H 0.13 2.00 7.23 -51.93 -0.38 1.63 16 21 C -0.08 -0.87 4.92 -27.88 -0.14 -1.01 16 22 C -0.08 -1.00 4.72 -104.62 -0.49 -1.50 16 23 C -0.11 -1.46 9.70 -39.58 -0.38 -1.84 16 24 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 25 C -0.12 -1.62 10.05 -39.59 -0.40 -2.01 16 26 C -0.11 -1.56 10.05 -39.59 -0.40 -1.96 16 27 C -0.11 -1.40 8.62 -39.58 -0.34 -1.74 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 30 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16 31 H 0.08 1.38 7.88 -51.93 -0.41 0.97 16 32 H 0.09 1.39 7.83 -51.93 -0.41 0.99 16 33 H 0.11 0.88 6.03 -51.93 -0.31 0.57 16 34 H 0.08 0.51 7.40 -51.93 -0.38 0.13 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.40 2.99 8.80 -40.82 -0.36 2.63 16 38 H 0.08 0.72 7.30 -51.93 -0.38 0.34 16 39 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -35.98 361.63 -8.87 -44.84 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.35 Total: 2.07 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.57 Total: -8.99 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.09 Total: -41.59 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.19 Total: -19.43 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.98 -8.87 -44.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360782220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.989 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds