Wall clock time and date at job start Tue Mar 31 2020 11:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86805 * 119.99722 * 2 1 4 4 H 1.48496 * 109.47056 * 270.00003 * 3 2 1 5 5 H 1.48499 * 109.47020 * 29.99488 * 3 2 1 6 6 H 1.48497 * 109.46734 * 149.99508 * 3 2 1 7 7 C 1.37872 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00193 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99767 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47354 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99940 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00212 * 179.97438 * 11 10 9 14 14 C 1.47268 * 121.35197 * 359.97438 * 13 11 10 15 15 C 1.52996 * 108.18802 * 118.47461 * 14 13 11 16 16 N 1.45646 * 110.76944 * 46.72374 * 15 14 13 17 17 C 1.33384 * 124.59341 * 338.10502 * 16 15 14 18 18 O 1.21279 * 118.48587 * 184.29621 * 17 16 15 19 19 C 1.47049 * 121.35546 * 179.97438 * 13 11 10 20 20 H 1.08999 * 109.56696 * 342.58860 * 19 13 11 21 21 C 1.53000 * 109.56693 * 102.93490 * 19 13 11 22 22 C 1.50703 * 109.47566 * 295.00503 * 21 19 13 23 23 C 1.38233 * 119.99619 * 269.72840 * 22 21 19 24 24 C 1.38240 * 119.99729 * 179.78583 * 23 22 21 25 25 C 1.38230 * 119.99727 * 0.45761 * 24 23 22 26 26 C 1.38231 * 120.00391 * 359.77556 * 25 24 23 27 27 C 1.38232 * 119.99946 * 0.02562 * 26 25 24 28 28 H 0.97001 * 119.99653 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47600 * 59.99619 * 9 7 2 30 30 H 1.09006 * 109.46687 * 299.99672 * 9 7 2 31 31 H 1.09000 * 109.47057 * 59.99427 * 10 9 7 32 32 H 1.08998 * 109.46850 * 299.99583 * 10 9 7 33 33 H 1.09002 * 109.72112 * 358.80415 * 14 13 11 34 34 H 1.09000 * 109.72389 * 238.15158 * 14 13 11 35 35 H 1.08999 * 109.21715 * 167.06036 * 15 14 13 36 36 H 1.08996 * 109.21351 * 286.39472 * 15 14 13 37 37 H 0.97004 * 117.70190 * 158.09739 * 16 15 14 38 38 H 1.09006 * 109.46836 * 55.00076 * 21 19 13 39 39 H 1.08996 * 109.47349 * 174.99669 * 21 19 13 40 40 H 1.07999 * 119.99839 * 359.97438 * 23 22 21 41 41 H 1.08003 * 119.99912 * 180.25464 * 24 23 22 42 42 H 1.08000 * 119.99938 * 179.78905 * 25 24 23 43 43 H 1.08002 * 119.99822 * 180.02562 * 26 25 24 44 44 H 1.07998 * 119.99969 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5286 -2.6364 -0.0001 12 8 6.1350 -1.5861 -0.0005 13 7 6.2025 -3.8036 0.0003 14 6 5.4966 -5.0960 0.0014 15 6 5.8753 -5.8481 -1.2760 16 7 7.3151 -5.8079 -1.4914 17 6 8.1342 -4.8953 -0.9666 18 8 9.3049 -4.9190 -1.2824 19 6 7.6726 -3.8383 -0.0003 20 1 8.0606 -2.8674 -0.3084 21 6 8.1779 -4.1722 1.4047 22 6 7.8068 -3.0586 2.3499 23 6 8.6746 -2.0006 2.5460 24 6 8.3324 -0.9769 3.4096 25 6 7.1265 -1.0160 4.0843 26 6 6.2609 -2.0763 3.8919 27 6 6.6013 -3.0980 3.0252 28 1 -0.4850 0.8401 -0.0004 29 1 3.8746 -0.6807 0.8905 30 1 3.8752 -0.6795 -0.8895 31 1 3.6586 -3.1501 -0.8903 32 1 3.6580 -3.1504 0.8897 33 1 4.4199 -4.9270 0.0231 34 1 5.7957 -5.6779 0.8732 35 1 5.5541 -6.8861 -1.1898 36 1 5.3723 -5.3872 -2.1261 37 1 7.7059 -6.4930 -2.0561 38 1 7.7221 -5.1028 1.7431 39 1 9.2618 -4.2851 1.3838 40 1 9.6187 -1.9724 2.0221 41 1 9.0086 -0.1482 3.5597 42 1 6.8606 -0.2179 4.7616 43 1 5.3185 -2.1065 4.4187 44 1 5.9251 -3.9266 2.8751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360782220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:14 Heat of formation + Delta-G solvation = -69.856026 kcal Electronic energy + Delta-G solvation = -27266.598941 eV Core-core repulsion = 23568.535604 eV Total energy + Delta-G solvation = -3698.063337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07082 -40.22210 -39.90425 -37.63539 -35.83098 -35.46381 -34.01638 -33.06151 -31.74698 -31.00584 -29.47396 -27.85638 -25.84110 -24.75269 -23.48666 -23.23892 -22.11883 -20.96534 -19.52775 -19.26649 -18.40757 -18.16815 -17.61350 -17.35051 -16.90544 -16.38450 -16.21174 -16.06794 -15.94633 -15.79979 -15.14448 -15.00198 -14.72046 -14.58963 -14.24702 -13.92679 -13.84311 -13.67938 -13.48045 -13.27337 -13.03628 -12.91991 -12.71492 -12.59098 -12.06990 -11.99097 -11.96022 -11.83579 -11.76993 -11.37336 -11.35234 -10.76508 -10.65728 -10.20096 -9.88272 -9.76126 -9.45986 -8.30217 -6.31286 0.44614 0.54604 1.30932 1.34380 1.38696 1.48566 1.68462 1.77105 2.19059 2.34696 2.90708 3.06436 3.33395 3.66449 3.85655 3.86572 3.91831 4.07517 4.14720 4.17241 4.20784 4.28580 4.36597 4.43479 4.50648 4.52297 4.64003 4.70253 4.77036 4.82775 4.96277 5.03095 5.16472 5.18330 5.29174 5.39696 5.46962 5.58012 5.62730 5.65292 5.68442 5.77110 6.13779 6.16198 6.24866 6.33721 6.75232 7.03073 7.23712 7.34204 8.85126 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.005051 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.455802 B = 5542.670785 C = 7112.501153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.019 3.981 3 Si 0.927 3.073 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.008 3.992 10 C -0.110 4.110 11 C 0.523 3.477 12 O -0.571 6.571 13 N -0.611 5.611 14 C 0.077 3.923 15 C 0.092 3.908 16 N -0.702 5.702 17 C 0.523 3.477 18 O -0.587 6.587 19 C 0.141 3.859 20 H 0.094 0.906 21 C -0.069 4.069 22 C -0.083 4.083 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.132 4.132 27 C -0.113 4.113 28 H 0.266 0.734 29 H 0.006 0.994 30 H 0.001 0.999 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.074 0.926 37 H 0.410 0.590 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.639 -16.012 4.083 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.178 4.178 3 Si 0.753 3.247 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.030 4.030 10 C -0.150 4.150 11 C 0.314 3.686 12 O -0.449 6.449 13 N -0.347 5.347 14 C -0.045 4.045 15 C -0.032 4.032 16 N -0.353 5.353 17 C 0.308 3.692 18 O -0.467 6.467 19 C 0.034 3.966 20 H 0.112 0.888 21 C -0.108 4.108 22 C -0.084 4.084 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.154 4.154 26 C -0.150 4.150 27 C -0.131 4.131 28 H 0.075 0.925 29 H 0.024 0.976 30 H 0.020 0.980 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.154 0.846 36 H 0.092 0.908 37 H 0.247 0.753 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.267 -15.183 4.047 21.909 hybrid contribution 0.112 1.154 -0.360 1.214 sum 15.380 -14.028 3.687 21.141 Atomic orbital electron populations 1.70006 1.07546 1.27869 1.52778 1.25665 0.95317 1.02281 0.94581 0.85996 0.79335 0.80472 0.78895 1.19809 1.20506 1.18935 1.21396 0.90988 0.93731 1.49679 0.92415 1.19190 0.94046 0.93875 0.95921 1.21508 0.88593 0.99757 1.05139 1.21228 0.90980 0.82537 0.73860 1.90673 1.71082 1.32770 1.50400 1.48327 1.04846 1.06964 1.74534 1.22561 1.00265 0.82510 0.99127 1.22068 0.78633 1.04319 0.98160 1.45321 1.09284 1.30135 1.50511 1.20139 0.85565 0.82351 0.81154 1.90763 1.19088 1.74555 1.62281 1.21104 0.81831 0.98459 0.95194 0.88785 1.20757 1.02500 0.97538 0.89985 1.19723 0.94898 0.96338 0.97397 1.21237 1.00170 0.94406 0.98627 1.21344 0.97400 0.98875 0.97144 1.21394 0.94742 0.98750 1.00510 1.21405 0.99775 0.94750 0.99079 1.21154 0.96086 0.99387 0.96460 0.92497 0.97597 0.98027 0.87584 0.87410 0.85621 0.87525 0.84567 0.90793 0.75320 0.87936 0.88907 0.85565 0.84867 0.85187 0.85291 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 2 C 0.02 1.13 5.47 84.65 0.46 1.59 16 3 Si 0.93 46.35 27.47 68.60 1.88 48.23 16 4 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.26 -13.32 6.54 99.48 0.65 -12.67 16 7 C -0.52 -28.56 9.66 25.60 0.25 -28.31 16 8 H 0.06 3.28 7.99 -2.91 -0.02 3.25 16 9 C 0.01 0.37 3.33 29.85 0.10 0.46 16 10 C -0.11 -3.75 4.01 29.85 0.12 -3.63 16 11 C 0.52 17.21 6.69 87.66 0.59 17.79 16 12 O -0.57 -24.43 15.54 -3.04 -0.05 -24.47 16 13 N -0.61 -13.98 2.13 -799.16 -1.70 -15.68 16 14 C 0.08 0.94 6.31 86.23 0.54 1.48 16 15 C 0.09 0.81 7.34 86.54 0.63 1.44 16 16 N -0.70 -10.18 5.42 -467.06 -2.53 -12.71 16 17 C 0.52 12.03 7.10 87.80 0.62 12.65 16 18 O -0.59 -17.87 17.80 -3.03 -0.05 -17.92 16 19 C 0.14 3.45 2.45 44.07 0.11 3.56 16 20 H 0.09 3.01 7.23 -2.39 -0.02 2.99 16 21 C -0.07 -1.43 4.92 29.85 0.15 -1.28 16 22 C -0.08 -2.10 4.72 -19.87 -0.09 -2.19 16 23 C -0.13 -3.36 9.70 22.27 0.22 -3.15 16 24 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 25 C -0.14 -3.69 10.05 22.27 0.22 -3.47 16 26 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 27 C -0.11 -2.85 8.62 22.27 0.19 -2.66 16 28 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.01 0.29 7.16 -2.39 -0.02 0.27 16 30 H 0.00 0.07 7.53 -2.38 -0.02 0.05 16 31 H 0.11 3.14 7.88 -2.39 -0.02 3.13 16 32 H 0.11 3.19 7.83 -2.39 -0.02 3.17 16 33 H 0.13 1.33 6.03 -2.39 -0.01 1.32 16 34 H 0.11 0.80 7.40 -2.39 -0.02 0.78 16 35 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.41 4.71 8.80 -92.71 -0.82 3.89 16 38 H 0.10 1.56 7.30 -2.38 -0.02 1.54 16 39 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16 40 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 44 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -80.20 361.63 2.55 -77.65 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.14 Total: 14.31 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 4.56 Total: -12.30 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -3.93 Total: -85.48 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -0.10 Total: -42.40 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.23 kcal Total: -80.20 2.55 -77.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360782220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.792 kcal (2) G-P(sol) polarization free energy of solvation -80.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds