Wall clock time and date at job start Tue Mar 31 2020 11:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48501 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46775 * 299.99283 * 3 2 1 6 6 H 1.48500 * 109.47041 * 59.99462 * 3 2 1 7 7 C 1.37885 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47294 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00147 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99852 * 179.97438 * 11 10 9 14 14 C 1.47268 * 121.35353 * 5.24892 * 13 11 10 15 15 C 1.52992 * 108.18729 * 118.51336 * 14 13 11 16 16 N 1.45649 * 110.77287 * 46.72631 * 15 14 13 17 17 C 1.33386 * 124.59161 * 338.09631 * 16 15 14 18 18 O 1.21275 * 118.49002 * 184.31848 * 17 16 15 19 19 C 1.47053 * 121.35169 * 185.26668 * 13 11 10 20 20 H 1.08998 * 109.56526 * 102.78048 * 19 13 11 21 21 C 1.53000 * 109.56956 * 342.54209 * 19 13 11 22 22 C 1.50693 * 109.47341 * 181.28442 * 21 19 13 23 23 C 1.38231 * 120.00136 * 98.97823 * 22 21 19 24 24 C 1.38239 * 120.00183 * 179.97438 * 23 22 21 25 25 C 1.38235 * 119.99805 * 0.02792 * 24 23 22 26 26 C 1.38237 * 120.00151 * 0.25314 * 25 24 23 27 27 C 1.38235 * 119.99999 * 279.00497 * 22 21 19 28 28 H 0.97000 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47680 * 60.00200 * 9 7 2 30 30 H 1.08994 * 109.47661 * 299.99466 * 9 7 2 31 31 H 1.08998 * 109.46925 * 59.99939 * 10 9 7 32 32 H 1.09003 * 109.47416 * 300.00170 * 10 9 7 33 33 H 1.08995 * 109.72433 * 238.18503 * 14 13 11 34 34 H 1.09000 * 109.71681 * 358.80083 * 14 13 11 35 35 H 1.09004 * 109.21880 * 167.05622 * 15 14 13 36 36 H 1.09001 * 109.21821 * 286.39500 * 15 14 13 37 37 H 0.97000 * 117.70840 * 158.12514 * 16 15 14 38 38 H 1.08996 * 109.46643 * 61.28298 * 21 19 13 39 39 H 1.09001 * 109.47125 * 301.28658 * 21 19 13 40 40 H 1.07996 * 120.00215 * 0.02562 * 23 22 21 41 41 H 1.07997 * 120.00240 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.99821 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.00139 * 179.72903 * 26 25 24 44 44 H 1.08001 * 119.99967 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1344 0.0008 14 6 3.6334 -6.1718 0.1147 15 6 3.9940 -6.9352 1.3906 16 7 3.2269 -8.1694 1.4884 17 6 2.0728 -8.3956 0.8591 18 8 1.4864 -9.4336 1.0814 19 6 1.4651 -7.4223 -0.1139 20 1 1.5691 -7.8052 -1.1291 21 6 -0.0174 -7.2301 0.2120 22 6 -0.7270 -8.5566 0.1246 23 6 -0.9874 -9.2783 1.2744 24 6 -1.6388 -10.4949 1.1943 25 6 -2.0294 -10.9901 -0.0358 26 6 -1.7639 -10.2711 -1.1863 27 6 -1.1171 -9.0520 -1.1056 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8719 -3.6044 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 4.0567 -6.6815 -0.7507 34 1 4.0239 -5.1557 0.1706 35 1 5.0575 -7.1739 1.3775 36 1 3.7781 -6.3091 2.2564 37 1 3.5798 -8.8764 2.0509 38 1 -0.4588 -6.5341 -0.5013 39 1 -0.1187 -6.8296 1.2206 40 1 -0.6826 -8.8913 2.2355 41 1 -1.8426 -11.0585 2.0927 42 1 -2.5380 -11.9407 -0.0984 43 1 -2.0651 -10.6600 -2.1477 44 1 -0.9137 -8.4882 -2.0040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360782221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:18 Heat of formation + Delta-G solvation = -29.478569 kcal Electronic energy + Delta-G solvation = -26637.071516 eV Core-core repulsion = 22940.759076 eV Total energy + Delta-G solvation = -3696.312439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08390 -39.03095 -38.78311 -36.50470 -34.62680 -33.65861 -32.82732 -31.05313 -30.67448 -29.94174 -28.02838 -25.83193 -24.96902 -23.55966 -22.39912 -21.81590 -21.03847 -19.92811 -18.64608 -17.50965 -17.28326 -16.52301 -16.47091 -16.05424 -15.58928 -15.47577 -14.98505 -14.72330 -14.59675 -14.43988 -13.85372 -13.74521 -13.28816 -13.16937 -13.05762 -12.55890 -12.41798 -12.35881 -12.22481 -12.08207 -11.80199 -11.48438 -11.16305 -10.99881 -10.91425 -10.77917 -10.62412 -10.33632 -10.04981 -9.65053 -9.31875 -9.16612 -8.87898 -8.63525 -8.62840 -8.37710 -8.22121 -6.01586 -4.06370 1.56473 1.66158 2.50306 2.78694 2.98024 3.17011 3.28727 3.36367 3.38667 3.99662 4.30348 4.41763 4.48817 4.83435 4.83976 4.95530 5.04728 5.09743 5.16226 5.20005 5.28761 5.30018 5.33780 5.39177 5.54709 5.68269 5.73810 5.95222 6.00388 6.07884 6.11749 6.25300 6.28279 6.52394 6.61985 6.66094 6.70204 6.75815 6.90490 7.08987 7.23633 7.50025 7.68024 7.78100 8.00146 8.04647 8.30837 8.55615 9.01854 9.57698 11.09211 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.003220 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.907512 B = 8693.982469 C = 9810.066781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.518 3.482 12 O -0.516 6.516 13 N -0.630 5.630 14 C 0.093 3.907 15 C 0.094 3.906 16 N -0.721 5.721 17 C 0.508 3.492 18 O -0.526 6.526 19 C 0.144 3.856 20 H 0.099 0.901 21 C -0.072 4.072 22 C -0.071 4.071 23 C -0.068 4.068 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.117 4.117 28 H 0.261 0.739 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.397 0.603 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.957 -19.645 0.716 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.309 3.691 12 O -0.391 6.391 13 N -0.368 5.368 14 C -0.030 4.030 15 C -0.032 4.032 16 N -0.374 5.374 17 C 0.294 3.706 18 O -0.402 6.402 19 C 0.038 3.962 20 H 0.116 0.884 21 C -0.110 4.110 22 C -0.072 4.072 23 C -0.086 4.086 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.135 4.135 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.232 0.768 38 H 0.143 0.857 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.718 -19.844 0.684 20.662 hybrid contribution 0.960 0.608 0.306 1.177 sum 6.677 -19.236 0.989 20.386 Atomic orbital electron populations 1.70000 1.06048 1.26554 1.50028 1.25022 0.94816 0.99246 0.95250 0.86549 0.79975 0.83876 0.77631 1.19756 1.21001 1.21021 1.21220 0.92911 0.90936 1.51571 0.92569 1.18917 0.93131 0.89277 0.98724 1.21940 1.00868 0.91621 1.02404 1.21657 0.88568 0.84964 0.73877 1.90646 1.14119 1.86373 1.47938 1.48553 1.06719 1.05463 1.76074 1.22061 0.80811 1.03191 0.96965 1.21795 0.96078 0.86011 0.99294 1.45415 1.23420 1.18511 1.50033 1.20518 0.80575 0.88017 0.81538 1.90831 1.58637 1.26927 1.63757 1.21336 0.93956 0.82620 0.98336 0.88358 1.21229 0.90000 0.93933 1.05811 1.19914 0.97846 0.96079 0.93339 1.20814 0.95845 0.94237 0.97693 1.20995 0.99638 0.96360 0.97338 1.20995 1.01083 0.99651 0.92875 1.20987 1.00188 0.95382 0.98020 1.20953 0.99394 0.96155 0.97036 0.92946 0.95722 0.95758 0.90177 0.89985 0.90416 0.86805 0.89340 0.91011 0.76781 0.85675 0.90496 0.87233 0.86896 0.86894 0.86709 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.25 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.04 0.93 4.26 -27.88 -0.12 0.82 16 10 C -0.13 -2.34 4.03 -27.88 -0.11 -2.45 16 11 C 0.52 8.97 7.60 -10.99 -0.08 8.89 16 12 O -0.52 -10.79 11.85 5.56 0.07 -10.72 16 13 N -0.63 -8.26 2.98 -166.54 -0.50 -8.75 16 14 C 0.09 0.82 6.44 -3.63 -0.02 0.79 16 15 C 0.09 0.68 7.34 -4.50 -0.03 0.65 16 16 N -0.72 -6.88 5.42 -61.32 -0.33 -7.21 16 17 C 0.51 6.53 7.35 -11.73 -0.09 6.45 16 18 O -0.53 -8.08 13.44 5.56 0.07 -8.00 16 19 C 0.14 1.92 3.26 -68.91 -0.22 1.70 16 20 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 21 C -0.07 -1.12 3.41 -27.89 -0.10 -1.21 16 22 C -0.07 -1.06 3.99 -104.63 -0.42 -1.48 16 23 C -0.07 -1.00 7.11 -39.58 -0.28 -1.28 16 24 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 25 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 27 C -0.12 -1.61 9.73 -39.58 -0.39 -1.99 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16 32 H 0.08 1.34 8.02 -51.93 -0.42 0.93 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.11 0.90 6.04 -51.93 -0.31 0.59 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.40 3.22 8.80 -40.82 -0.36 2.86 16 38 H 0.13 2.17 5.89 -51.96 -0.31 1.86 16 39 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 40 H 0.11 1.60 8.00 -52.49 -0.42 1.18 16 41 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -34.14 356.13 -9.44 -43.58 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.37 Total: 3.80 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -3.47 Total: -8.16 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.09 Total: -41.82 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.14 Total: -18.72 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.14 -9.44 -43.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360782221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.105 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds