Wall clock time and date at job start Tue Mar 31 2020 11:03:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86798 * 120.00199 * 2 1
4 4 H 1.48501 * 109.47322 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.46775 * 299.99283 * 3 2 1
6 6 H 1.48500 * 109.47041 * 59.99462 * 3 2 1
7 7 C 1.37885 * 119.99966 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99801 * 180.02562 * 7 2 1
9 9 C 1.50693 * 119.99656 * 0.02562 * 7 2 1
10 10 C 1.53004 * 109.47024 * 179.97438 * 9 7 2
11 11 C 1.50696 * 109.47294 * 179.97438 * 10 9 7
12 12 O 1.21281 * 120.00147 * 0.02562 * 11 10 9
13 13 N 1.34780 * 119.99852 * 179.97438 * 11 10 9
14 14 C 1.47268 * 121.35353 * 5.24892 * 13 11 10
15 15 C 1.52992 * 108.18729 * 118.51336 * 14 13 11
16 16 N 1.45649 * 110.77287 * 46.72631 * 15 14 13
17 17 C 1.33386 * 124.59161 * 338.09631 * 16 15 14
18 18 O 1.21275 * 118.49002 * 184.31848 * 17 16 15
19 19 C 1.47053 * 121.35169 * 185.26668 * 13 11 10
20 20 H 1.08998 * 109.56526 * 102.78048 * 19 13 11
21 21 C 1.53000 * 109.56956 * 342.54209 * 19 13 11
22 22 C 1.50693 * 109.47341 * 181.28442 * 21 19 13
23 23 C 1.38231 * 120.00136 * 98.97823 * 22 21 19
24 24 C 1.38239 * 120.00183 * 179.97438 * 23 22 21
25 25 C 1.38235 * 119.99805 * 0.02792 * 24 23 22
26 26 C 1.38237 * 120.00151 * 0.25314 * 25 24 23
27 27 C 1.38235 * 119.99999 * 279.00497 * 22 21 19
28 28 H 0.97000 * 119.99902 * 0.02562 * 1 2 3
29 29 H 1.09004 * 109.47680 * 60.00200 * 9 7 2
30 30 H 1.08994 * 109.47661 * 299.99466 * 9 7 2
31 31 H 1.08998 * 109.46925 * 59.99939 * 10 9 7
32 32 H 1.09003 * 109.47416 * 300.00170 * 10 9 7
33 33 H 1.08995 * 109.72433 * 238.18503 * 14 13 11
34 34 H 1.09000 * 109.71681 * 358.80083 * 14 13 11
35 35 H 1.09004 * 109.21880 * 167.05622 * 15 14 13
36 36 H 1.09001 * 109.21821 * 286.39500 * 15 14 13
37 37 H 0.97000 * 117.70840 * 158.12514 * 16 15 14
38 38 H 1.08996 * 109.46643 * 61.28298 * 21 19 13
39 39 H 1.09001 * 109.47125 * 301.28658 * 21 19 13
40 40 H 1.07996 * 120.00215 * 0.02562 * 23 22 21
41 41 H 1.07997 * 120.00240 * 180.02562 * 24 23 22
42 42 H 1.07998 * 119.99821 * 179.97438 * 25 24 23
43 43 H 1.07995 * 120.00139 * 179.72903 * 26 25 24
44 44 H 1.08001 * 119.99967 * 359.97438 * 27 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3963 -1.2126
6 1 1.8904 2.3964 1.2124
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4917 -4.9672 0.0012
12 8 0.2789 -4.9672 0.0011
13 7 2.1656 -6.1344 0.0008
14 6 3.6334 -6.1718 0.1147
15 6 3.9940 -6.9352 1.3906
16 7 3.2269 -8.1694 1.4884
17 6 2.0728 -8.3956 0.8591
18 8 1.4864 -9.4336 1.0814
19 6 1.4651 -7.4223 -0.1139
20 1 1.5691 -7.8052 -1.1291
21 6 -0.0174 -7.2301 0.2120
22 6 -0.7270 -8.5566 0.1246
23 6 -0.9874 -9.2783 1.2744
24 6 -1.6388 -10.4949 1.1943
25 6 -2.0294 -10.9901 -0.0358
26 6 -1.7639 -10.2711 -1.1863
27 6 -1.1171 -9.0520 -1.1056
28 1 -0.4850 0.8401 -0.0004
29 1 0.6247 -2.5571 -0.8897
30 1 0.6241 -2.5567 0.8903
31 1 2.8719 -3.6044 0.8905
32 1 2.8719 -3.6044 -0.8894
33 1 4.0567 -6.6815 -0.7507
34 1 4.0239 -5.1557 0.1706
35 1 5.0575 -7.1739 1.3775
36 1 3.7781 -6.3091 2.2564
37 1 3.5798 -8.8764 2.0509
38 1 -0.4588 -6.5341 -0.5013
39 1 -0.1187 -6.8296 1.2206
40 1 -0.6826 -8.8913 2.2355
41 1 -1.8426 -11.0585 2.0927
42 1 -2.5380 -11.9407 -0.0984
43 1 -2.0651 -10.6600 -2.1477
44 1 -0.9137 -8.4882 -2.0040
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000360782221.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:18
Heat of formation + Delta-G solvation = -29.478569 kcal
Electronic energy + Delta-G solvation = -26637.071516 eV
Core-core repulsion = 22940.759076 eV
Total energy + Delta-G solvation = -3696.312439 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.08390 -39.03095 -38.78311 -36.50470 -34.62680 -33.65861 -32.82732 -31.05313
-30.67448 -29.94174 -28.02838 -25.83193 -24.96902 -23.55966 -22.39912 -21.81590
-21.03847 -19.92811 -18.64608 -17.50965 -17.28326 -16.52301 -16.47091 -16.05424
-15.58928 -15.47577 -14.98505 -14.72330 -14.59675 -14.43988 -13.85372 -13.74521
-13.28816 -13.16937 -13.05762 -12.55890 -12.41798 -12.35881 -12.22481 -12.08207
-11.80199 -11.48438 -11.16305 -10.99881 -10.91425 -10.77917 -10.62412 -10.33632
-10.04981 -9.65053 -9.31875 -9.16612 -8.87898 -8.63525 -8.62840 -8.37710
-8.22121 -6.01586 -4.06370 1.56473 1.66158 2.50306 2.78694 2.98024
3.17011 3.28727 3.36367 3.38667 3.99662 4.30348 4.41763 4.48817
4.83435 4.83976 4.95530 5.04728 5.09743 5.16226 5.20005 5.28761
5.30018 5.33780 5.39177 5.54709 5.68269 5.73810 5.95222 6.00388
6.07884 6.11749 6.25300 6.28279 6.52394 6.61985 6.66094 6.70204
6.75815 6.90490 7.08987 7.23633 7.50025 7.68024 7.78100 8.00146
8.04647 8.30837 8.55615 9.01854 9.57698 11.09211
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.018333 B = 0.003220 C = 0.002854
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1526.907512 B = 8693.982469 C = 9810.066781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.059 3.941
3 Si 0.892 3.108
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.528 4.528
8 H 0.056 0.944
9 C 0.037 3.963
10 C -0.129 4.129
11 C 0.518 3.482
12 O -0.516 6.516
13 N -0.630 5.630
14 C 0.093 3.907
15 C 0.094 3.906
16 N -0.721 5.721
17 C 0.508 3.492
18 O -0.526 6.526
19 C 0.144 3.856
20 H 0.099 0.901
21 C -0.072 4.072
22 C -0.071 4.071
23 C -0.068 4.068
24 C -0.125 4.125
25 C -0.128 4.128
26 C -0.128 4.128
27 C -0.117 4.117
28 H 0.261 0.739
29 H 0.024 0.976
30 H 0.024 0.976
31 H 0.080 0.920
32 H 0.082 0.918
33 H 0.078 0.922
34 H 0.114 0.886
35 H 0.088 0.912
36 H 0.072 0.928
37 H 0.397 0.603
38 H 0.126 0.874
39 H 0.076 0.924
40 H 0.110 0.890
41 H 0.113 0.887
42 H 0.113 0.887
43 H 0.115 0.885
44 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.957 -19.645 0.716 20.853
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.143 4.143
3 Si 0.720 3.280
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.566 4.566
8 H 0.074 0.926
9 C 0.000 4.000
10 C -0.168 4.168
11 C 0.309 3.691
12 O -0.391 6.391
13 N -0.368 5.368
14 C -0.030 4.030
15 C -0.032 4.032
16 N -0.374 5.374
17 C 0.294 3.706
18 O -0.402 6.402
19 C 0.038 3.962
20 H 0.116 0.884
21 C -0.110 4.110
22 C -0.072 4.072
23 C -0.086 4.086
24 C -0.143 4.143
25 C -0.146 4.146
26 C -0.146 4.146
27 C -0.135 4.135
28 H 0.071 0.929
29 H 0.043 0.957
30 H 0.042 0.958
31 H 0.098 0.902
32 H 0.100 0.900
33 H 0.096 0.904
34 H 0.132 0.868
35 H 0.107 0.893
36 H 0.090 0.910
37 H 0.232 0.768
38 H 0.143 0.857
39 H 0.095 0.905
40 H 0.128 0.872
41 H 0.131 0.869
42 H 0.131 0.869
43 H 0.133 0.867
44 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 5.718 -19.844 0.684 20.662
hybrid contribution 0.960 0.608 0.306 1.177
sum 6.677 -19.236 0.989 20.386
Atomic orbital electron populations
1.70000 1.06048 1.26554 1.50028 1.25022 0.94816 0.99246 0.95250
0.86549 0.79975 0.83876 0.77631 1.19756 1.21001 1.21021 1.21220
0.92911 0.90936 1.51571 0.92569 1.18917 0.93131 0.89277 0.98724
1.21940 1.00868 0.91621 1.02404 1.21657 0.88568 0.84964 0.73877
1.90646 1.14119 1.86373 1.47938 1.48553 1.06719 1.05463 1.76074
1.22061 0.80811 1.03191 0.96965 1.21795 0.96078 0.86011 0.99294
1.45415 1.23420 1.18511 1.50033 1.20518 0.80575 0.88017 0.81538
1.90831 1.58637 1.26927 1.63757 1.21336 0.93956 0.82620 0.98336
0.88358 1.21229 0.90000 0.93933 1.05811 1.19914 0.97846 0.96079
0.93339 1.20814 0.95845 0.94237 0.97693 1.20995 0.99638 0.96360
0.97338 1.20995 1.01083 0.99651 0.92875 1.20987 1.00188 0.95382
0.98020 1.20953 0.99394 0.96155 0.97036 0.92946 0.95722 0.95758
0.90177 0.89985 0.90416 0.86805 0.89340 0.91011 0.76781 0.85675
0.90496 0.87233 0.86896 0.86894 0.86709 0.86555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16
4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
7 C -0.53 -14.25 9.11 -34.44 -0.31 -14.56 16
8 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16
9 C 0.04 0.93 4.26 -27.88 -0.12 0.82 16
10 C -0.13 -2.34 4.03 -27.88 -0.11 -2.45 16
11 C 0.52 8.97 7.60 -10.99 -0.08 8.89 16
12 O -0.52 -10.79 11.85 5.56 0.07 -10.72 16
13 N -0.63 -8.26 2.98 -166.54 -0.50 -8.75 16
14 C 0.09 0.82 6.44 -3.63 -0.02 0.79 16
15 C 0.09 0.68 7.34 -4.50 -0.03 0.65 16
16 N -0.72 -6.88 5.42 -61.32 -0.33 -7.21 16
17 C 0.51 6.53 7.35 -11.73 -0.09 6.45 16
18 O -0.53 -8.08 13.44 5.56 0.07 -8.00 16
19 C 0.14 1.92 3.26 -68.91 -0.22 1.70 16
20 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16
21 C -0.07 -1.12 3.41 -27.89 -0.10 -1.21 16
22 C -0.07 -1.06 3.99 -104.63 -0.42 -1.48 16
23 C -0.07 -1.00 7.11 -39.58 -0.28 -1.28 16
24 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16
25 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16
26 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16
27 C -0.12 -1.61 9.73 -39.58 -0.39 -1.99 16
28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16
30 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16
31 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16
32 H 0.08 1.34 8.02 -51.93 -0.42 0.93 16
33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
34 H 0.11 0.90 6.04 -51.93 -0.31 0.59 16
35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16
36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16
37 H 0.40 3.22 8.80 -40.82 -0.36 2.86 16
38 H 0.13 2.17 5.89 -51.96 -0.31 1.86 16
39 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16
40 H 0.11 1.60 8.00 -52.49 -0.42 1.18 16
41 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16
42 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16
43 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16
44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16
LS Contribution 356.13 15.07 5.37 5.37
Total: -1.00 -34.14 356.13 -9.44 -43.58
By element:
Atomic # 1 Polarization: 10.17 SS G_CDS: -6.37 Total: 3.80 kcal
Atomic # 6 Polarization: -4.70 SS G_CDS: -3.47 Total: -8.16 kcal
Atomic # 7 Polarization: -41.73 SS G_CDS: -0.09 Total: -41.82 kcal
Atomic # 8 Polarization: -18.86 SS G_CDS: 0.14 Total: -18.72 kcal
Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -34.14 -9.44 -43.58 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000360782221.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.105 kcal
(2) G-P(sol) polarization free energy of solvation -34.141 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.479 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds