Wall clock time and date at job start Tue Mar 31 2020 11:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48501 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46775 * 299.99283 * 3 2 1 6 6 H 1.48500 * 109.47041 * 59.99462 * 3 2 1 7 7 C 1.37885 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47294 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00147 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99852 * 179.97438 * 11 10 9 14 14 C 1.47268 * 121.35353 * 5.24892 * 13 11 10 15 15 C 1.52992 * 108.18729 * 118.51336 * 14 13 11 16 16 N 1.45649 * 110.77287 * 46.72631 * 15 14 13 17 17 C 1.33386 * 124.59161 * 338.09631 * 16 15 14 18 18 O 1.21275 * 118.49002 * 184.31848 * 17 16 15 19 19 C 1.47053 * 121.35169 * 185.26668 * 13 11 10 20 20 H 1.08998 * 109.56526 * 102.78048 * 19 13 11 21 21 C 1.53000 * 109.56956 * 342.54209 * 19 13 11 22 22 C 1.50693 * 109.47341 * 181.28442 * 21 19 13 23 23 C 1.38231 * 120.00136 * 98.97823 * 22 21 19 24 24 C 1.38239 * 120.00183 * 179.97438 * 23 22 21 25 25 C 1.38235 * 119.99805 * 0.02792 * 24 23 22 26 26 C 1.38237 * 120.00151 * 0.25314 * 25 24 23 27 27 C 1.38235 * 119.99999 * 279.00497 * 22 21 19 28 28 H 0.97000 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47680 * 60.00200 * 9 7 2 30 30 H 1.08994 * 109.47661 * 299.99466 * 9 7 2 31 31 H 1.08998 * 109.46925 * 59.99939 * 10 9 7 32 32 H 1.09003 * 109.47416 * 300.00170 * 10 9 7 33 33 H 1.08995 * 109.72433 * 238.18503 * 14 13 11 34 34 H 1.09000 * 109.71681 * 358.80083 * 14 13 11 35 35 H 1.09004 * 109.21880 * 167.05622 * 15 14 13 36 36 H 1.09001 * 109.21821 * 286.39500 * 15 14 13 37 37 H 0.97000 * 117.70840 * 158.12514 * 16 15 14 38 38 H 1.08996 * 109.46643 * 61.28298 * 21 19 13 39 39 H 1.09001 * 109.47125 * 301.28658 * 21 19 13 40 40 H 1.07996 * 120.00215 * 0.02562 * 23 22 21 41 41 H 1.07997 * 120.00240 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.99821 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.00139 * 179.72903 * 26 25 24 44 44 H 1.08001 * 119.99967 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1344 0.0008 14 6 3.6334 -6.1718 0.1147 15 6 3.9940 -6.9352 1.3906 16 7 3.2269 -8.1694 1.4884 17 6 2.0728 -8.3956 0.8591 18 8 1.4864 -9.4336 1.0814 19 6 1.4651 -7.4223 -0.1139 20 1 1.5691 -7.8052 -1.1291 21 6 -0.0174 -7.2301 0.2120 22 6 -0.7270 -8.5566 0.1246 23 6 -0.9874 -9.2783 1.2744 24 6 -1.6388 -10.4949 1.1943 25 6 -2.0294 -10.9901 -0.0358 26 6 -1.7639 -10.2711 -1.1863 27 6 -1.1171 -9.0520 -1.1056 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8719 -3.6044 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 4.0567 -6.6815 -0.7507 34 1 4.0239 -5.1557 0.1706 35 1 5.0575 -7.1739 1.3775 36 1 3.7781 -6.3091 2.2564 37 1 3.5798 -8.8764 2.0509 38 1 -0.4588 -6.5341 -0.5013 39 1 -0.1187 -6.8296 1.2206 40 1 -0.6826 -8.8913 2.2355 41 1 -1.8426 -11.0585 2.0927 42 1 -2.5380 -11.9407 -0.0984 43 1 -2.0651 -10.6600 -2.1477 44 1 -0.9137 -8.4882 -2.0040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360782221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:17 Heat of formation + Delta-G solvation = -52.204127 kcal Electronic energy + Delta-G solvation = -26638.056970 eV Core-core repulsion = 22940.759076 eV Total energy + Delta-G solvation = -3697.297893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16658 -40.26752 -39.80645 -37.53397 -35.86108 -35.37967 -34.11072 -32.75081 -31.70391 -30.94134 -29.16744 -27.48538 -26.23506 -24.44971 -23.57270 -23.43351 -22.09210 -21.13289 -19.77069 -18.83842 -18.31075 -18.08847 -17.52084 -17.21497 -16.83535 -16.48291 -16.35287 -16.21563 -15.77943 -15.65745 -15.00290 -14.94779 -14.33093 -14.29023 -14.17380 -14.11887 -13.79319 -13.53836 -13.45558 -13.25582 -12.99684 -12.85479 -12.68051 -12.51844 -12.38915 -11.96689 -11.89587 -11.80544 -11.53997 -11.40220 -11.21642 -10.54809 -10.26650 -10.10611 -9.72482 -9.67638 -9.30590 -8.15225 -6.28481 0.52267 0.61876 1.44743 1.45450 1.49106 1.58412 1.64184 1.74878 2.24983 2.45155 2.94847 3.18736 3.41012 3.67124 3.84186 3.88764 4.00430 4.05954 4.14954 4.18621 4.22395 4.30894 4.41929 4.49575 4.55046 4.60582 4.71017 4.71835 4.86286 4.91596 5.01043 5.09935 5.22496 5.23360 5.39912 5.54687 5.63424 5.67590 5.67715 5.81004 5.82006 5.89206 6.17852 6.20532 6.21636 6.33268 6.91103 7.11979 7.24047 7.41985 8.97404 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.003220 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.907512 B = 8693.982469 C = 9810.066781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.249 1.249 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.114 4.114 11 C 0.516 3.484 12 O -0.566 6.566 13 N -0.619 5.619 14 C 0.081 3.919 15 C 0.092 3.908 16 N -0.709 5.709 17 C 0.508 3.492 18 O -0.555 6.555 19 C 0.145 3.855 20 H 0.110 0.890 21 C -0.060 4.060 22 C -0.087 4.087 23 C -0.086 4.086 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.131 4.131 28 H 0.261 0.739 29 H -0.018 1.018 30 H -0.019 1.019 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.070 0.930 37 H 0.407 0.593 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.291 -20.763 0.406 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.172 1.172 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.575 4.575 8 H 0.098 0.902 9 C 0.005 3.995 10 C -0.154 4.154 11 C 0.308 3.692 12 O -0.445 6.445 13 N -0.355 5.355 14 C -0.040 4.040 15 C -0.032 4.032 16 N -0.361 5.361 17 C 0.293 3.707 18 O -0.433 6.433 19 C 0.039 3.961 20 H 0.127 0.873 21 C -0.098 4.098 22 C -0.087 4.087 23 C -0.104 4.104 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.149 4.149 28 H 0.070 0.930 29 H 0.001 0.999 30 H -0.001 1.001 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.089 0.911 37 H 0.244 0.756 38 H 0.117 0.883 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.150 0.850 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.153 -20.988 0.389 22.900 hybrid contribution -0.079 0.897 0.412 0.990 sum 9.074 -20.091 0.801 22.059 Atomic orbital electron populations 1.70185 1.08321 1.27587 1.51759 1.26111 0.95642 1.03874 0.94877 0.85327 0.79558 0.78383 0.77301 1.17240 1.20968 1.21016 1.21750 0.94103 0.91440 1.50220 0.90246 1.18695 0.93727 0.92424 0.94692 1.21681 0.99315 0.89354 1.05003 1.21484 0.87891 0.86017 0.73851 1.90661 1.16223 1.87187 1.50383 1.48440 1.08735 1.04028 1.74288 1.22539 0.77532 1.04940 0.98980 1.22034 0.98133 0.84753 0.98286 1.45360 1.22291 1.19576 1.48904 1.20294 0.81362 0.87362 0.81717 1.90821 1.59734 1.27938 1.64758 1.21288 0.92742 0.82801 0.99304 0.87288 1.20905 0.91899 0.93803 1.03192 1.19928 0.98713 0.95911 0.94178 1.20839 0.97042 0.95317 0.97184 1.21285 0.99171 0.95855 0.98799 1.21379 1.00412 1.00639 0.92249 1.21348 0.99179 0.94664 0.99497 1.21146 0.99907 0.97077 0.96798 0.93036 0.99922 1.00085 0.87364 0.87265 0.87792 0.85296 0.84723 0.91139 0.75592 0.88259 0.93346 0.88371 0.85048 0.83898 0.83986 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.03 16 3 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.54 -29.02 9.11 25.60 0.23 -28.79 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.04 2.22 4.26 29.85 0.13 2.35 16 10 C -0.11 -4.08 4.03 29.85 0.12 -3.95 16 11 C 0.52 18.29 7.60 87.66 0.67 18.95 16 12 O -0.57 -25.54 11.85 -3.03 -0.04 -25.58 16 13 N -0.62 -15.70 2.98 -799.21 -2.38 -18.08 16 14 C 0.08 1.14 6.44 86.23 0.56 1.70 16 15 C 0.09 0.99 7.34 86.54 0.63 1.62 16 16 N -0.71 -11.83 5.42 -467.07 -2.53 -14.37 16 17 C 0.51 12.70 7.35 87.79 0.65 13.34 16 18 O -0.55 -17.01 13.44 -3.01 -0.04 -17.05 16 19 C 0.15 3.90 3.26 44.06 0.14 4.05 16 20 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 21 C -0.06 -2.00 3.41 29.85 0.10 -1.90 16 22 C -0.09 -2.71 3.99 -19.87 -0.08 -2.79 16 23 C -0.09 -2.63 7.11 22.27 0.16 -2.47 16 24 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 25 C -0.13 -2.99 10.05 22.27 0.22 -2.76 16 26 C -0.13 -3.08 10.05 22.27 0.22 -2.85 16 27 C -0.13 -3.65 9.73 22.27 0.22 -3.44 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H -0.02 -1.06 8.10 -2.38 -0.02 -1.08 16 30 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 31 H 0.11 3.25 7.66 -2.39 -0.02 3.23 16 32 H 0.11 3.31 8.02 -2.39 -0.02 3.30 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.13 1.47 6.04 -2.39 -0.01 1.46 16 35 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.41 5.55 8.80 -92.71 -0.82 4.74 16 38 H 0.10 3.81 5.89 -2.78 -0.02 3.79 16 39 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 40 H 0.10 3.11 8.00 -2.91 -0.02 3.09 16 41 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 44 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -80.31 356.13 2.17 -78.14 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.19 Total: 20.28 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.66 Total: -10.18 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -4.63 Total: -90.56 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.08 Total: -42.63 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -80.31 2.17 -78.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360782221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.932 kcal (2) G-P(sol) polarization free energy of solvation -80.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds