Wall clock time and date at job start Tue Mar 31 2020 11:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00026 * 2 1 4 4 H 1.48496 * 109.47006 * 268.06178 * 3 2 1 5 5 H 1.48493 * 109.47539 * 28.06500 * 3 2 1 6 6 H 1.48504 * 109.46978 * 148.06890 * 3 2 1 7 7 C 1.38813 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00032 * 355.32590 * 7 2 1 9 9 N 1.36939 * 119.99743 * 175.04412 * 7 2 1 10 10 C 1.46963 * 120.59263 * 138.81271 * 9 7 2 11 11 C 1.53807 * 108.40052 * 124.76078 * 10 9 7 12 12 N 1.46961 * 108.58208 * 49.63084 * 11 10 9 13 13 C 1.34781 * 120.59002 * 124.62249 * 12 11 10 14 14 O 1.21591 * 119.99738 * 184.97638 * 13 12 11 15 15 C 1.47532 * 120.00025 * 4.98846 * 13 12 11 16 16 C 1.39702 * 120.19498 * 53.16022 * 15 13 12 17 17 C 1.37792 * 119.90870 * 179.70133 * 16 15 13 18 18 C 1.38548 * 120.29901 * 0.59457 * 17 16 15 19 19 C 1.38061 * 120.39035 * 359.68117 * 18 17 16 20 20 C 1.38709 * 120.08258 * 0.02562 * 19 18 17 21 21 O 1.35652 * 120.14941 * 179.97438 * 20 19 18 22 22 C 1.42900 * 117.00061 * 5.91871 * 21 20 19 23 23 C 1.53006 * 117.49742 * 224.92883 * 22 21 20 24 24 C 1.52997 * 117.49910 * 156.30591 * 22 21 20 25 25 C 1.46965 * 118.81685 * 304.65492 * 12 11 10 26 26 C 1.46968 * 120.59499 * 319.09240 * 9 7 2 27 27 H 0.97001 * 119.99542 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.60933 * 244.54561 * 10 9 7 29 29 H 1.08995 * 109.60833 * 5.05133 * 10 9 7 30 30 H 1.09008 * 109.73597 * 289.84805 * 11 10 9 31 31 H 1.09000 * 109.53571 * 169.30525 * 11 10 9 32 32 H 1.08004 * 120.04719 * 359.97438 * 16 15 13 33 33 H 1.07997 * 119.85280 * 180.29859 * 17 16 15 34 34 H 1.07997 * 119.80689 * 179.69719 * 18 17 16 35 35 H 1.07991 * 119.95760 * 180.02562 * 19 18 17 36 36 H 1.09001 * 115.55024 * 10.62856 * 22 21 20 37 37 H 1.08999 * 117.49584 * 359.97438 * 23 22 21 38 38 H 1.08998 * 117.49511 * 145.01622 * 23 22 21 39 39 H 1.09003 * 117.49391 * 214.97487 * 24 22 21 40 40 H 1.08996 * 117.50016 * 359.97438 * 24 22 21 41 41 H 1.09001 * 109.60493 * 295.48127 * 25 12 11 42 42 H 1.08995 * 109.61248 * 174.96765 * 25 12 11 43 43 H 1.09004 * 109.60763 * 354.94279 * 26 9 7 44 44 H 1.09000 * 109.61164 * 115.45473 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5387 2.0227 -1.3992 5 1 1.4279 2.6641 0.6586 6 1 3.5268 1.4522 0.7405 7 6 2.0102 -1.2022 0.0005 8 1 1.4728 -2.1359 0.0772 9 7 3.3758 -1.2045 -0.1019 10 6 4.1854 -2.1206 0.7136 11 6 5.0796 -2.9463 -0.2267 12 7 5.7619 -2.0286 -1.1498 13 6 7.1060 -2.0303 -1.2499 14 8 7.6646 -1.2065 -1.9482 15 6 7.8994 -3.0318 -0.5122 16 6 7.6115 -4.3924 -0.6445 17 6 8.3603 -5.3231 0.0424 18 6 9.3905 -4.9152 0.8741 19 6 9.6821 -3.5735 1.0184 20 6 8.9425 -2.6233 0.3298 21 8 9.2275 -1.3046 0.4711 22 6 10.3833 -0.9695 1.2417 23 6 10.2475 0.1610 2.2638 24 6 11.0414 0.3858 0.9753 25 6 4.9526 -1.1087 -1.9613 26 6 4.0582 -0.2867 -1.0249 27 1 -0.4849 0.8401 0.0004 28 1 4.8057 -1.5464 1.4019 29 1 3.5303 -2.7859 1.2759 30 1 4.4680 -3.6480 -0.7941 31 1 5.8188 -3.4923 0.3594 32 1 6.8059 -4.7146 -1.2878 33 1 8.1400 -6.3749 -0.0643 34 1 9.9692 -5.6512 1.4125 35 1 10.4869 -3.2634 1.6682 36 1 11.0357 -1.8042 1.4978 37 1 9.2767 0.6494 2.3480 38 1 10.8106 0.0700 3.1926 39 1 12.1270 0.4427 1.0565 40 1 10.5931 1.0216 0.2119 41 1 4.3320 -1.6796 -2.6520 42 1 5.6079 -0.4410 -2.5206 43 1 3.3189 0.2592 -1.6111 44 1 4.6696 0.4150 -0.4576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362807820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:52 Heat of formation + Delta-G solvation = 32.070462 kcal Electronic energy + Delta-G solvation = -27008.076431 eV Core-core repulsion = 23314.432958 eV Total energy + Delta-G solvation = -3693.643473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75530 -39.35288 -37.90131 -36.88132 -35.46541 -33.94709 -31.88109 -31.32882 -30.41179 -29.98823 -27.17220 -24.39372 -23.99794 -23.51502 -22.71865 -22.52677 -21.31400 -20.77085 -19.42494 -18.29968 -17.32901 -16.44288 -16.38583 -15.75279 -15.48641 -15.25687 -15.05407 -14.85586 -14.56951 -14.21530 -14.19997 -14.03471 -13.68660 -13.38456 -12.76421 -12.69800 -12.53534 -12.30654 -12.09841 -11.95601 -11.83425 -11.80473 -11.36452 -11.05779 -10.91765 -10.76244 -10.43402 -10.30649 -10.24347 -10.02282 -9.63115 -9.54296 -9.10222 -8.73010 -8.36452 -8.26326 -6.77459 -5.99329 -3.54303 0.89079 1.20141 2.79813 2.91797 3.25877 3.30471 3.44737 3.46573 3.48872 3.69425 4.29572 4.47995 4.49465 4.60107 4.67533 4.71627 4.79554 4.89515 4.94233 5.13012 5.27187 5.28964 5.34174 5.43947 5.55857 5.61824 5.62849 5.65139 5.81033 5.85294 5.88281 6.00629 6.03080 6.10343 6.18447 6.25133 6.26988 6.45568 6.51980 6.56539 6.72714 6.95165 7.23744 7.77731 8.03801 8.33155 8.47648 8.87794 9.64401 10.07785 11.15374 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.004270 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.798894 B = 6555.560103 C = 7544.154390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.034 3.966 3 Si 0.893 3.107 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.269 4.269 8 H 0.083 0.917 9 N -0.607 5.607 10 C 0.136 3.864 11 C 0.086 3.914 12 N -0.594 5.594 13 C 0.562 3.438 14 O -0.539 6.539 15 C -0.153 4.153 16 C -0.047 4.047 17 C -0.163 4.163 18 C -0.063 4.063 19 C -0.216 4.216 20 C 0.176 3.824 21 O -0.265 6.265 22 C -0.003 4.003 23 C -0.182 4.182 24 C -0.168 4.168 25 C 0.097 3.903 26 C 0.111 3.889 27 H 0.264 0.736 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.972 -8.700 3.378 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.167 4.167 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.398 4.398 8 H 0.100 0.900 9 N -0.331 5.331 10 C 0.009 3.991 11 C -0.039 4.039 12 N -0.326 5.326 13 C 0.350 3.650 14 O -0.417 6.417 15 C -0.157 4.157 16 C -0.066 4.066 17 C -0.181 4.181 18 C -0.081 4.081 19 C -0.235 4.235 20 C 0.129 3.871 21 O -0.176 6.176 22 C -0.059 4.059 23 C -0.219 4.219 24 C -0.205 4.205 25 C -0.027 4.027 26 C -0.015 4.015 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 21.951 -7.965 2.935 23.535 hybrid contribution 0.430 0.848 0.129 0.959 sum 22.380 -7.117 3.064 23.684 Atomic orbital electron populations 1.69747 1.05796 1.26770 1.52947 1.25576 0.95243 0.98147 0.97687 0.86807 0.79573 0.83647 0.77660 1.21180 1.23006 1.19263 1.18845 0.79488 0.93715 1.47737 0.89999 1.44204 1.03109 1.42997 1.42802 1.21420 0.93080 0.92778 0.91831 1.22585 0.96221 0.92476 0.92586 1.47929 1.04848 1.38395 1.41413 1.18034 0.81851 0.83716 0.81411 1.90748 1.70615 1.39098 1.41258 1.19270 0.99330 0.94399 1.02697 1.21161 0.97968 0.90386 0.97090 1.20983 0.97621 0.99767 0.99759 1.21055 0.96000 0.94887 0.96152 1.21168 1.03677 0.93554 1.05082 1.18869 0.92609 0.82980 0.92627 1.86150 1.43293 1.20916 1.67268 1.23084 0.89944 0.93664 0.99235 1.23477 1.03008 1.01584 0.93871 1.23355 0.99598 0.97675 0.99900 1.22232 0.93591 0.92982 0.93883 1.21820 0.94858 0.92742 0.92091 0.92593 0.95546 0.90475 0.91168 0.90288 0.84659 0.85213 0.85431 0.84812 0.85761 0.87639 0.87671 0.87533 0.87535 0.91175 0.89767 0.90235 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.70 13.97 55.49 0.78 -26.93 16 2 C 0.03 0.97 5.41 -17.43 -0.09 0.88 16 3 Si 0.89 22.74 24.39 -169.99 -4.15 18.59 16 4 H -0.28 -7.00 6.72 56.52 0.38 -6.62 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.80 6.20 56.52 0.35 -6.45 16 7 C -0.27 -7.42 9.99 -15.06 -0.15 -7.57 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 9 N -0.61 -14.41 2.61 -171.77 -0.45 -14.86 16 10 C 0.14 2.67 6.70 -3.37 -0.02 2.64 16 11 C 0.09 1.40 5.73 -3.37 -0.02 1.38 16 12 N -0.59 -10.87 2.95 -173.44 -0.51 -11.38 16 13 C 0.56 10.44 6.84 -12.47 -0.09 10.35 16 14 O -0.54 -11.71 16.14 1.25 0.02 -11.69 16 15 C -0.15 -2.32 4.68 -104.85 -0.49 -2.81 16 16 C -0.05 -0.56 7.67 -39.20 -0.30 -0.86 16 17 C -0.16 -1.53 10.02 -39.63 -0.40 -1.93 16 18 C -0.06 -0.56 10.03 -39.53 -0.40 -0.96 16 19 C -0.22 -2.28 9.11 -39.47 -0.36 -2.64 16 20 C 0.18 2.51 6.68 -38.69 -0.26 2.25 16 21 O -0.26 -4.09 9.57 -22.69 -0.22 -4.31 16 22 C 0.00 -0.03 6.11 -26.73 -0.16 -0.19 16 23 C -0.18 -1.73 10.48 -26.73 -0.28 -2.01 16 24 C -0.17 -1.61 10.48 -26.73 -0.28 -1.89 16 25 C 0.10 1.89 6.60 -3.60 -0.02 1.87 16 26 C 0.11 2.50 4.30 -3.59 -0.02 2.48 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.45 7.93 -51.93 -0.41 1.04 16 30 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.08 1.11 5.22 -51.93 -0.27 0.83 16 32 H 0.14 1.44 7.67 -52.48 -0.40 1.04 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.13 1.07 5.67 -52.49 -0.30 0.77 16 36 H 0.13 1.01 5.53 -51.93 -0.29 0.72 16 37 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.64 6.99 -51.93 -0.36 1.27 16 43 H 0.08 1.88 5.03 -51.93 -0.26 1.62 16 44 H 0.03 0.76 6.72 -51.93 -0.35 0.42 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -34.51 350.71 -8.66 -43.17 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.08 Total: 1.13 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -3.34 Total: 0.98 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.18 Total: -53.16 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.20 Total: -16.00 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.15 Total: 18.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.51 -8.66 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362807820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.240 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds