Wall clock time and date at job start Tue Mar 31 2020 11:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00026 * 2 1 4 4 H 1.48496 * 109.47006 * 268.06178 * 3 2 1 5 5 H 1.48493 * 109.47539 * 28.06500 * 3 2 1 6 6 H 1.48504 * 109.46978 * 148.06890 * 3 2 1 7 7 C 1.38813 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00032 * 355.32590 * 7 2 1 9 9 N 1.36939 * 119.99743 * 175.04412 * 7 2 1 10 10 C 1.46963 * 120.59263 * 138.81271 * 9 7 2 11 11 C 1.53807 * 108.40052 * 124.76078 * 10 9 7 12 12 N 1.46961 * 108.58208 * 49.63084 * 11 10 9 13 13 C 1.34781 * 120.59002 * 124.62249 * 12 11 10 14 14 O 1.21591 * 119.99738 * 184.97638 * 13 12 11 15 15 C 1.47532 * 120.00025 * 4.98846 * 13 12 11 16 16 C 1.39702 * 120.19498 * 53.16022 * 15 13 12 17 17 C 1.37792 * 119.90870 * 179.70133 * 16 15 13 18 18 C 1.38548 * 120.29901 * 0.59457 * 17 16 15 19 19 C 1.38061 * 120.39035 * 359.68117 * 18 17 16 20 20 C 1.38709 * 120.08258 * 0.02562 * 19 18 17 21 21 O 1.35652 * 120.14941 * 179.97438 * 20 19 18 22 22 C 1.42900 * 117.00061 * 5.91871 * 21 20 19 23 23 C 1.53006 * 117.49742 * 224.92883 * 22 21 20 24 24 C 1.52997 * 117.49910 * 156.30591 * 22 21 20 25 25 C 1.46965 * 118.81685 * 304.65492 * 12 11 10 26 26 C 1.46968 * 120.59499 * 319.09240 * 9 7 2 27 27 H 0.97001 * 119.99542 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.60933 * 244.54561 * 10 9 7 29 29 H 1.08995 * 109.60833 * 5.05133 * 10 9 7 30 30 H 1.09008 * 109.73597 * 289.84805 * 11 10 9 31 31 H 1.09000 * 109.53571 * 169.30525 * 11 10 9 32 32 H 1.08004 * 120.04719 * 359.97438 * 16 15 13 33 33 H 1.07997 * 119.85280 * 180.29859 * 17 16 15 34 34 H 1.07997 * 119.80689 * 179.69719 * 18 17 16 35 35 H 1.07991 * 119.95760 * 180.02562 * 19 18 17 36 36 H 1.09001 * 115.55024 * 10.62856 * 22 21 20 37 37 H 1.08999 * 117.49584 * 359.97438 * 23 22 21 38 38 H 1.08998 * 117.49511 * 145.01622 * 23 22 21 39 39 H 1.09003 * 117.49391 * 214.97487 * 24 22 21 40 40 H 1.08996 * 117.50016 * 359.97438 * 24 22 21 41 41 H 1.09001 * 109.60493 * 295.48127 * 25 12 11 42 42 H 1.08995 * 109.61248 * 174.96765 * 25 12 11 43 43 H 1.09004 * 109.60763 * 354.94279 * 26 9 7 44 44 H 1.09000 * 109.61164 * 115.45473 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5387 2.0227 -1.3992 5 1 1.4279 2.6641 0.6586 6 1 3.5268 1.4522 0.7405 7 6 2.0102 -1.2022 0.0005 8 1 1.4728 -2.1359 0.0772 9 7 3.3758 -1.2045 -0.1019 10 6 4.1854 -2.1206 0.7136 11 6 5.0796 -2.9463 -0.2267 12 7 5.7619 -2.0286 -1.1498 13 6 7.1060 -2.0303 -1.2499 14 8 7.6646 -1.2065 -1.9482 15 6 7.8994 -3.0318 -0.5122 16 6 7.6115 -4.3924 -0.6445 17 6 8.3603 -5.3231 0.0424 18 6 9.3905 -4.9152 0.8741 19 6 9.6821 -3.5735 1.0184 20 6 8.9425 -2.6233 0.3298 21 8 9.2275 -1.3046 0.4711 22 6 10.3833 -0.9695 1.2417 23 6 10.2475 0.1610 2.2638 24 6 11.0414 0.3858 0.9753 25 6 4.9526 -1.1087 -1.9613 26 6 4.0582 -0.2867 -1.0249 27 1 -0.4849 0.8401 0.0004 28 1 4.8057 -1.5464 1.4019 29 1 3.5303 -2.7859 1.2759 30 1 4.4680 -3.6480 -0.7941 31 1 5.8188 -3.4923 0.3594 32 1 6.8059 -4.7146 -1.2878 33 1 8.1400 -6.3749 -0.0643 34 1 9.9692 -5.6512 1.4125 35 1 10.4869 -3.2634 1.6682 36 1 11.0357 -1.8042 1.4978 37 1 9.2767 0.6494 2.3480 38 1 10.8106 0.0700 3.1926 39 1 12.1270 0.4427 1.0565 40 1 10.5931 1.0216 0.2119 41 1 4.3320 -1.6796 -2.6520 42 1 5.6079 -0.4410 -2.5206 43 1 3.3189 0.2592 -1.6111 44 1 4.6696 0.4150 -0.4576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362807820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:52 Heat of formation + Delta-G solvation = 9.756678 kcal Electronic energy + Delta-G solvation = -27009.044029 eV Core-core repulsion = 23314.432958 eV Total energy + Delta-G solvation = -3694.611071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81803 -40.58979 -38.87301 -38.45732 -36.29951 -35.68813 -33.64681 -32.84147 -31.74297 -30.86551 -28.90976 -25.73191 -25.23248 -24.93456 -23.93609 -23.43344 -22.46116 -21.97286 -20.74300 -19.45617 -18.80649 -18.09830 -17.48984 -17.06212 -16.99341 -16.33896 -16.13452 -16.03127 -15.93534 -15.76678 -15.51350 -15.01212 -14.98820 -14.73128 -14.57646 -14.18130 -13.96457 -13.68375 -13.43555 -13.19542 -12.87900 -12.75118 -12.54940 -12.52070 -12.35043 -12.16719 -12.08063 -11.86238 -11.67535 -11.48739 -11.09344 -10.97330 -10.81778 -9.99898 -9.92368 -9.18662 -8.73066 -8.22419 -5.74311 0.00793 0.38408 1.24209 1.34097 1.42341 1.59312 1.94396 2.01135 2.33701 2.64084 2.84206 3.07543 3.18878 3.42722 3.56302 3.85488 3.90587 3.93946 3.97563 4.02996 4.08425 4.20183 4.22581 4.36757 4.39755 4.48721 4.51212 4.54062 4.62685 4.64478 4.68409 4.77468 4.87014 4.89227 4.89515 5.09039 5.11141 5.20840 5.34952 5.45830 5.48465 5.79027 5.89268 6.12151 6.33246 6.43984 6.83830 7.06648 7.49380 7.98304 8.95442 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.004270 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.798894 B = 6555.560103 C = 7544.154390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.016 4.016 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.254 4.254 8 H 0.059 0.941 9 N -0.618 5.618 10 C 0.131 3.869 11 C 0.099 3.901 12 N -0.598 5.598 13 C 0.561 3.439 14 O -0.583 6.583 15 C -0.189 4.189 16 C -0.052 4.052 17 C -0.154 4.154 18 C -0.049 4.049 19 C -0.214 4.214 20 C 0.152 3.848 21 O -0.307 6.307 22 C -0.019 4.019 23 C -0.178 4.178 24 C -0.170 4.170 25 C 0.105 3.895 26 C 0.113 3.887 27 H 0.264 0.736 28 H 0.022 0.978 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.079 0.921 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.048 -11.276 4.636 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.212 4.212 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.234 1.234 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.076 0.924 9 N -0.344 5.344 10 C 0.005 3.995 11 C -0.024 4.024 12 N -0.330 5.330 13 C 0.351 3.649 14 O -0.463 6.463 15 C -0.193 4.193 16 C -0.071 4.071 17 C -0.172 4.172 18 C -0.067 4.067 19 C -0.232 4.232 20 C 0.106 3.894 21 O -0.220 6.220 22 C -0.075 4.075 23 C -0.215 4.215 24 C -0.207 4.207 25 C -0.019 4.019 26 C -0.013 4.013 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.098 0.902 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 25.057 -10.571 4.201 27.519 hybrid contribution -0.446 1.536 -0.219 1.614 sum 24.612 -9.035 3.982 26.518 Atomic orbital electron populations 1.69854 1.07145 1.27390 1.55330 1.26123 0.95748 1.00926 0.98411 0.85949 0.78067 0.80417 0.78083 1.19962 1.23358 1.19526 1.18791 0.81202 0.92685 1.45671 0.92350 1.44322 1.02236 1.43823 1.43976 1.21603 0.93170 0.92456 0.92249 1.22540 0.96278 0.91615 0.91983 1.48025 1.05109 1.38345 1.41519 1.18679 0.81700 0.83755 0.80734 1.90705 1.71314 1.41181 1.43149 1.19208 1.00577 0.94798 1.04697 1.21327 0.98816 0.89310 0.97634 1.21407 0.96618 1.00873 0.98280 1.21591 0.95278 0.94870 0.94926 1.21499 1.03546 0.93648 1.04497 1.19204 0.93267 0.83302 0.93665 1.86087 1.45230 1.22210 1.68466 1.23522 0.89522 0.94954 0.99453 1.23526 1.02223 1.00697 0.95076 1.23439 1.01230 0.96758 0.99246 1.21987 0.93310 0.93168 0.93434 1.21717 0.94660 0.92811 0.92139 0.92661 0.96039 0.89621 0.89846 0.87326 0.83955 0.81837 0.81359 0.82271 0.82737 0.90189 0.84463 0.84352 0.90175 0.90228 0.90031 0.91576 0.96177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.26 13.97 21.65 0.30 -58.96 16 2 C -0.02 -0.91 5.41 84.86 0.46 -0.45 16 3 Si 0.95 48.00 24.39 68.60 1.67 49.68 16 4 H -0.27 -13.23 6.72 99.48 0.67 -12.56 16 5 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 6 H -0.27 -13.67 6.20 99.48 0.62 -13.05 16 7 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 9 N -0.62 -29.49 2.61 -697.35 -1.82 -31.31 16 10 C 0.13 5.05 6.70 86.56 0.58 5.63 16 11 C 0.10 3.09 5.73 86.56 0.50 3.59 16 12 N -0.60 -21.75 2.95 -820.91 -2.42 -24.17 16 13 C 0.56 21.00 6.84 86.69 0.59 21.59 16 14 O -0.58 -26.20 16.14 -0.14 0.00 -26.20 16 15 C -0.19 -5.53 4.68 -20.01 -0.09 -5.62 16 16 C -0.05 -1.09 7.67 22.52 0.17 -0.92 16 17 C -0.15 -2.16 10.02 22.24 0.22 -1.93 16 18 C -0.05 -0.61 10.03 22.30 0.22 -0.39 16 19 C -0.21 -3.72 9.11 22.34 0.20 -3.52 16 20 C 0.15 4.13 6.68 22.85 0.15 4.28 16 21 O -0.31 -9.54 9.57 -85.81 -0.82 -10.36 16 22 C -0.02 -0.39 6.11 30.60 0.19 -0.20 16 23 C -0.18 -3.20 10.48 30.60 0.32 -2.88 16 24 C -0.17 -3.12 10.48 30.59 0.32 -2.80 16 25 C 0.11 4.15 6.60 86.42 0.57 4.72 16 26 C 0.11 5.13 4.30 86.41 0.37 5.50 16 27 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 3.14 7.93 -2.39 -0.02 3.12 16 30 H 0.08 2.41 8.14 -2.38 -0.02 2.40 16 31 H 0.11 2.79 5.22 -2.39 -0.01 2.78 16 32 H 0.14 2.65 7.67 -2.91 -0.02 2.63 16 33 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 35 H 0.16 1.82 5.67 -2.92 -0.02 1.81 16 36 H 0.16 2.01 5.53 -2.39 -0.01 2.00 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.08 3.26 6.99 -2.39 -0.02 3.24 16 43 H 0.07 3.17 5.03 -2.38 -0.01 3.15 16 44 H 0.02 0.97 6.72 -2.39 -0.02 0.95 16 Total: -1.00 -79.00 350.71 3.42 -75.58 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.89 Total: 12.50 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.62 Total: 13.24 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -3.94 Total: -114.44 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.82 Total: -36.55 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.67 Total: 49.68 kcal Total: -79.00 3.42 -75.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362807820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.336 kcal (2) G-P(sol) polarization free energy of solvation -78.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds