Wall clock time and date at job start Tue Mar 31 2020 11:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86799 * 120.00123 * 2 1 4 4 H 1.48491 * 109.47158 * 274.98835 * 3 2 1 5 5 H 1.48504 * 109.46955 * 34.98540 * 3 2 1 6 6 H 1.48500 * 109.46978 * 154.98190 * 3 2 1 7 7 C 1.39897 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99551 * 147.63601 * 7 2 1 9 9 C 1.41156 * 119.99758 * 327.63507 * 7 2 1 10 10 C 1.40871 * 120.15796 * 157.92064 * 9 7 2 11 11 C 1.36376 * 119.82437 * 180.02562 * 10 9 7 12 12 C 1.39476 * 120.16994 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83274 * 179.97438 * 12 11 10 14 14 C 1.34779 * 120.00039 * 37.78652 * 13 12 11 15 15 O 1.21573 * 119.99842 * 356.70123 * 14 13 12 16 16 N 1.34772 * 119.99613 * 176.69340 * 14 13 12 17 17 C 1.47583 * 134.48956 * 179.97438 * 16 14 13 18 18 C 1.53946 * 86.11566 * 155.36405 * 17 16 14 19 19 C 1.53008 * 113.74190 * 137.95769 * 18 17 16 20 20 H 1.09004 * 110.45544 * 301.22460 * 19 18 17 21 21 C 1.54508 * 110.51142 * 63.82565 * 19 18 17 22 22 C 1.54486 * 104.05750 * 118.78507 * 21 19 18 23 23 O 1.44423 * 104.80531 * 23.97855 * 22 21 19 24 24 C 1.44426 * 105.27413 * 319.48617 * 23 22 21 25 25 C 1.47817 * 134.46177 * 359.87565 * 16 14 13 26 26 C 1.39477 * 120.33608 * 0.24801 * 12 11 10 27 27 C 1.36375 * 120.16359 * 359.45112 * 26 12 11 28 28 H 0.97002 * 120.00094 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.09074 * 0.04209 * 10 9 7 30 30 H 1.08003 * 119.91128 * 180.02562 * 11 10 9 31 31 H 0.97000 * 119.99919 * 217.79097 * 13 12 11 32 32 H 1.09009 * 113.76918 * 41.06731 * 17 16 14 33 33 H 1.08999 * 113.87873 * 269.67826 * 17 16 14 34 34 H 1.09005 * 113.74263 * 269.15640 * 18 17 16 35 35 H 1.08995 * 110.51270 * 237.42837 * 21 19 18 36 36 H 1.08995 * 110.51310 * 0.14444 * 21 19 18 37 37 H 1.09004 * 110.36889 * 142.81292 * 22 21 19 38 38 H 1.09002 * 110.36904 * 265.14163 * 22 21 19 39 39 H 1.08993 * 110.37224 * 281.68028 * 24 23 22 40 40 H 1.08999 * 110.37082 * 159.34152 * 24 23 22 41 41 H 1.08996 * 113.77124 * 90.37453 * 25 16 14 42 42 H 1.09002 * 113.83265 * 318.91255 * 25 16 14 43 43 H 1.07998 * 119.92000 * 179.69875 * 26 12 11 44 44 H 1.07998 * 120.08688 * 180.29655 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3849 2.1072 -1.3947 5 1 1.4969 2.6199 0.8028 6 1 3.5891 1.4120 0.5921 7 6 2.0082 -1.2116 0.0005 8 1 2.9624 -1.2844 -0.5001 9 6 1.4668 -2.3387 0.6555 10 6 1.8846 -3.6350 0.2953 11 6 1.3567 -4.7192 0.9322 12 6 0.4051 -4.5471 1.9373 13 7 -0.1297 -5.6591 2.5825 14 6 0.6553 -6.7184 2.8619 15 8 1.8152 -6.7283 2.4976 16 7 0.1546 -7.7666 3.5453 17 6 0.7041 -9.0539 4.0131 18 6 -0.3969 -9.0135 5.0884 19 6 -1.0804 -10.3625 5.3212 20 1 -1.5323 -10.7250 4.3979 21 6 -0.0696 -11.3939 5.8704 22 6 -0.6419 -11.7812 7.2521 23 8 -2.0545 -11.4952 7.1598 24 6 -2.1437 -10.2486 6.4359 25 6 -1.1653 -8.0870 4.1285 26 6 -0.0177 -3.2671 2.2954 27 6 0.5056 -2.1731 1.6718 28 1 -0.4850 0.8401 -0.0004 29 1 2.6213 -3.7698 -0.4828 30 1 1.6763 -5.7136 0.6575 31 1 -1.0673 -5.6714 2.8309 32 1 1.7143 -8.9800 4.4158 33 1 0.5899 -9.8684 3.2978 34 1 -0.0884 -8.5281 6.0143 35 1 -0.0218 -12.2663 5.2187 36 1 0.9165 -10.9422 5.9785 37 1 -0.4813 -12.8419 7.4456 38 1 -0.1829 -11.1781 8.0355 39 1 -1.9152 -9.4104 7.0941 40 1 -3.1370 -10.1319 6.0024 41 1 -1.8306 -8.6158 3.4460 42 1 -1.6451 -7.2424 4.6230 43 1 -0.7585 -3.1419 3.0712 44 1 0.1809 -1.1823 1.9534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366388477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:59 Heat of formation + Delta-G solvation = -16.286524 kcal Electronic energy + Delta-G solvation = -25273.013685 eV Core-core repulsion = 21577.273296 eV Total energy + Delta-G solvation = -3695.740389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.77598 -39.53624 -38.27825 -36.91268 -34.37194 -33.18429 -32.77582 -30.14607 -29.54774 -29.17147 -27.80288 -26.41153 -24.76090 -23.27107 -22.55617 -21.42533 -20.69184 -20.26814 -19.23726 -17.87720 -17.30537 -16.83629 -16.53978 -16.38549 -15.63426 -15.33503 -15.18194 -14.86863 -14.14510 -14.03144 -13.86771 -13.61593 -13.16461 -12.98364 -12.92339 -12.65441 -12.17058 -12.10725 -12.05251 -11.98162 -11.75010 -11.41213 -11.35014 -11.12981 -10.96371 -10.91592 -10.75209 -10.50673 -10.17372 -10.14699 -9.71421 -9.54597 -9.09664 -8.72742 -8.57170 -7.51643 -7.10087 -6.84801 -4.23817 2.57602 2.77926 3.05295 3.07092 3.13450 3.20918 3.57028 3.67841 3.81443 3.91244 4.21606 4.28218 4.43256 4.53876 4.61215 4.66883 4.79433 4.94198 5.00853 5.08121 5.20895 5.23654 5.33126 5.36531 5.42076 5.44806 5.57336 5.67337 5.67840 5.74905 5.96229 6.21432 6.39455 6.45940 6.80946 6.97577 7.03390 7.16092 7.32290 7.41306 7.63022 7.92912 7.96875 8.06006 8.29435 8.49801 8.58696 8.87181 8.94154 9.16174 10.05075 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.041153 B = 0.002112 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.232631 B =13257.304768 C =13609.713783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.088 3.912 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.111 3.889 10 C -0.222 4.222 11 C -0.067 4.067 12 C -0.002 4.002 13 N -0.662 5.662 14 C 0.718 3.282 15 O -0.577 6.577 16 N -0.668 5.668 17 C 0.136 3.864 18 C -0.114 4.114 19 C -0.113 4.113 20 H 0.089 0.911 21 C -0.152 4.152 22 C 0.044 3.956 23 O -0.378 6.378 24 C 0.049 3.951 25 C 0.104 3.896 26 C -0.104 4.104 27 C -0.170 4.170 28 H 0.283 0.717 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.389 0.611 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 -17.588 12.105 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.099 0.901 9 C 0.109 3.891 10 C -0.242 4.242 11 C -0.087 4.087 12 C -0.094 4.094 13 N -0.307 5.307 14 C 0.422 3.578 15 O -0.454 6.454 16 N -0.410 5.410 17 C 0.013 3.987 18 C -0.133 4.133 19 C -0.132 4.132 20 H 0.108 0.892 21 C -0.189 4.189 22 C -0.033 4.033 23 O -0.297 6.297 24 C -0.027 4.027 25 C -0.020 4.020 26 C -0.124 4.124 27 C -0.190 4.190 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.222 0.778 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.265 -17.382 11.775 21.645 hybrid contribution -0.075 0.955 -0.046 0.959 sum -5.339 -16.427 11.729 20.879 Atomic orbital electron populations 1.69955 1.08059 1.29774 1.31634 1.25933 0.94357 1.01475 0.91570 0.86520 0.81545 0.80894 0.79165 1.19499 1.19923 1.18114 1.19484 1.05413 0.93785 1.30765 0.90050 1.17588 0.89787 0.91839 0.89923 1.20600 1.06998 0.92300 1.04349 1.20325 0.96496 0.98028 0.93829 1.16864 1.07083 0.84067 1.01419 1.41999 1.11305 1.15943 1.61440 1.15548 0.84660 0.79499 0.78089 1.90909 1.16418 1.80383 1.57716 1.49115 1.13627 1.17858 1.60413 1.22936 0.98439 0.84373 0.92988 1.23248 0.96652 0.94826 0.98584 1.22554 0.95980 0.94555 1.00116 0.89246 1.23004 0.99639 0.99261 0.97026 1.23434 0.81770 1.01519 0.96603 1.89133 1.23740 1.39940 1.76856 1.23503 0.99737 0.87224 0.92285 1.23245 0.87613 0.97673 0.93432 1.20144 1.00946 0.91505 0.99824 1.20601 1.02539 0.96559 0.99331 0.90670 0.88754 0.87968 0.77821 0.90210 0.90295 0.87757 0.90398 0.89957 0.89175 0.92214 0.91895 0.88903 0.89965 0.90237 0.89394 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.66 11.78 55.55 0.65 -19.01 16 2 C 0.09 2.20 4.77 -17.34 -0.08 2.12 16 3 Si 0.90 18.42 29.66 -169.99 -5.04 13.37 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.47 -12.52 8.94 -37.85 -0.34 -12.86 16 8 H 0.08 2.12 8.01 -52.49 -0.42 1.70 16 9 C 0.11 3.04 5.57 -106.80 -0.60 2.44 16 10 C -0.22 -5.83 9.74 -39.26 -0.38 -6.21 16 11 C -0.07 -1.68 8.59 -39.79 -0.34 -2.02 16 12 C 0.00 -0.05 6.25 -83.57 -0.52 -0.57 16 13 N -0.66 -12.55 5.30 -14.10 -0.07 -12.62 16 14 C 0.72 13.73 8.57 -86.92 -0.74 12.99 16 15 O -0.58 -13.61 14.69 5.30 0.08 -13.53 16 16 N -0.67 -9.04 3.61 -183.90 -0.66 -9.70 16 17 C 0.14 1.36 7.82 -2.97 -0.02 1.34 16 18 C -0.11 -0.81 3.09 -89.68 -0.28 -1.09 16 19 C -0.11 -0.65 2.87 -89.05 -0.26 -0.91 16 20 H 0.09 0.50 8.01 -51.93 -0.42 0.09 16 21 C -0.15 -0.83 6.47 -25.16 -0.16 -0.99 16 22 C 0.04 0.27 7.63 37.94 0.29 0.56 16 23 O -0.38 -3.28 11.65 -35.23 -0.41 -3.69 16 24 C 0.05 0.31 7.19 37.93 0.27 0.59 16 25 C 0.10 0.88 8.02 -2.83 -0.02 0.86 16 26 C -0.10 -2.43 9.90 -39.79 -0.39 -2.83 16 27 C -0.17 -4.44 8.74 -39.26 -0.34 -4.78 16 28 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 29 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.10 2.57 6.45 -52.48 -0.34 2.23 16 31 H 0.39 5.99 8.44 -40.82 -0.34 5.65 16 32 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.10 0.74 8.03 -51.93 -0.42 0.33 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.42 7.47 -51.93 -0.39 0.03 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.37 7.79 -51.93 -0.40 -0.03 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.59 8.00 -51.93 -0.42 0.17 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.11 2.81 6.53 -52.49 -0.34 2.47 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -32.82 362.27 -10.35 -43.17 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.42 Total: 7.91 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -3.92 Total: -11.36 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.08 Total: -41.33 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.33 Total: -17.22 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.04 Total: 13.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.82 -10.35 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366388477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.880 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds