Wall clock time and date at job start Tue Mar 31 2020 11:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86799 * 120.00123 * 2 1 4 4 H 1.48491 * 109.47158 * 274.98835 * 3 2 1 5 5 H 1.48504 * 109.46955 * 34.98540 * 3 2 1 6 6 H 1.48500 * 109.46978 * 154.98190 * 3 2 1 7 7 C 1.39897 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99551 * 147.63601 * 7 2 1 9 9 C 1.41156 * 119.99758 * 327.63507 * 7 2 1 10 10 C 1.40871 * 120.15796 * 157.92064 * 9 7 2 11 11 C 1.36376 * 119.82437 * 180.02562 * 10 9 7 12 12 C 1.39476 * 120.16994 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83274 * 179.97438 * 12 11 10 14 14 C 1.34779 * 120.00039 * 37.78652 * 13 12 11 15 15 O 1.21573 * 119.99842 * 356.70123 * 14 13 12 16 16 N 1.34772 * 119.99613 * 176.69340 * 14 13 12 17 17 C 1.47583 * 134.48956 * 179.97438 * 16 14 13 18 18 C 1.53946 * 86.11566 * 155.36405 * 17 16 14 19 19 C 1.53008 * 113.74190 * 137.95769 * 18 17 16 20 20 H 1.09004 * 110.45544 * 301.22460 * 19 18 17 21 21 C 1.54508 * 110.51142 * 63.82565 * 19 18 17 22 22 C 1.54486 * 104.05750 * 118.78507 * 21 19 18 23 23 O 1.44423 * 104.80531 * 23.97855 * 22 21 19 24 24 C 1.44426 * 105.27413 * 319.48617 * 23 22 21 25 25 C 1.47817 * 134.46177 * 359.87565 * 16 14 13 26 26 C 1.39477 * 120.33608 * 0.24801 * 12 11 10 27 27 C 1.36375 * 120.16359 * 359.45112 * 26 12 11 28 28 H 0.97002 * 120.00094 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.09074 * 0.04209 * 10 9 7 30 30 H 1.08003 * 119.91128 * 180.02562 * 11 10 9 31 31 H 0.97000 * 119.99919 * 217.79097 * 13 12 11 32 32 H 1.09009 * 113.76918 * 41.06731 * 17 16 14 33 33 H 1.08999 * 113.87873 * 269.67826 * 17 16 14 34 34 H 1.09005 * 113.74263 * 269.15640 * 18 17 16 35 35 H 1.08995 * 110.51270 * 237.42837 * 21 19 18 36 36 H 1.08995 * 110.51310 * 0.14444 * 21 19 18 37 37 H 1.09004 * 110.36889 * 142.81292 * 22 21 19 38 38 H 1.09002 * 110.36904 * 265.14163 * 22 21 19 39 39 H 1.08993 * 110.37224 * 281.68028 * 24 23 22 40 40 H 1.08999 * 110.37082 * 159.34152 * 24 23 22 41 41 H 1.08996 * 113.77124 * 90.37453 * 25 16 14 42 42 H 1.09002 * 113.83265 * 318.91255 * 25 16 14 43 43 H 1.07998 * 119.92000 * 179.69875 * 26 12 11 44 44 H 1.07998 * 120.08688 * 180.29655 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3849 2.1072 -1.3947 5 1 1.4969 2.6199 0.8028 6 1 3.5891 1.4120 0.5921 7 6 2.0082 -1.2116 0.0005 8 1 2.9624 -1.2844 -0.5001 9 6 1.4668 -2.3387 0.6555 10 6 1.8846 -3.6350 0.2953 11 6 1.3567 -4.7192 0.9322 12 6 0.4051 -4.5471 1.9373 13 7 -0.1297 -5.6591 2.5825 14 6 0.6553 -6.7184 2.8619 15 8 1.8152 -6.7283 2.4976 16 7 0.1546 -7.7666 3.5453 17 6 0.7041 -9.0539 4.0131 18 6 -0.3969 -9.0135 5.0884 19 6 -1.0804 -10.3625 5.3212 20 1 -1.5323 -10.7250 4.3979 21 6 -0.0696 -11.3939 5.8704 22 6 -0.6419 -11.7812 7.2521 23 8 -2.0545 -11.4952 7.1598 24 6 -2.1437 -10.2486 6.4359 25 6 -1.1653 -8.0870 4.1285 26 6 -0.0177 -3.2671 2.2954 27 6 0.5056 -2.1731 1.6718 28 1 -0.4850 0.8401 -0.0004 29 1 2.6213 -3.7698 -0.4828 30 1 1.6763 -5.7136 0.6575 31 1 -1.0673 -5.6714 2.8309 32 1 1.7143 -8.9800 4.4158 33 1 0.5899 -9.8684 3.2978 34 1 -0.0884 -8.5281 6.0143 35 1 -0.0218 -12.2663 5.2187 36 1 0.9165 -10.9422 5.9785 37 1 -0.4813 -12.8419 7.4456 38 1 -0.1829 -11.1781 8.0355 39 1 -1.9152 -9.4104 7.0941 40 1 -3.1370 -10.1319 6.0024 41 1 -1.8306 -8.6158 3.4460 42 1 -1.6451 -7.2424 4.6230 43 1 -0.7585 -3.1419 3.0712 44 1 0.1809 -1.1823 1.9534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366388477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:58 Heat of formation + Delta-G solvation = -36.773562 kcal Electronic energy + Delta-G solvation = -25273.902069 eV Core-core repulsion = 21577.273296 eV Total energy + Delta-G solvation = -3696.628774 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76015 -40.59381 -39.48250 -38.47998 -36.15326 -34.81290 -33.64181 -31.49993 -31.18133 -30.42222 -28.91526 -27.20267 -26.48545 -24.05051 -23.43575 -23.03805 -22.38300 -21.08461 -20.46869 -19.33076 -19.01534 -18.05651 -17.35854 -17.19533 -17.03564 -16.52708 -16.22471 -16.01830 -15.73423 -15.32334 -14.88065 -14.74166 -14.46970 -14.38575 -13.97890 -13.82797 -13.68697 -13.56861 -13.35675 -12.84407 -12.79363 -12.72146 -12.68141 -12.33729 -12.27810 -12.05112 -11.85186 -11.59910 -11.46206 -11.35972 -11.18416 -10.88043 -10.67996 -10.52096 -9.73124 -9.48968 -8.97540 -8.70954 -6.22737 0.85033 1.12366 1.37682 1.43099 1.53099 1.59622 2.16459 2.21021 2.65358 2.97581 3.13359 3.22393 3.68056 3.72826 3.90437 4.00745 4.14059 4.26241 4.36477 4.43263 4.46098 4.47501 4.49390 4.53071 4.59285 4.63467 4.78524 4.89202 4.91169 4.92876 4.98637 5.11558 5.15078 5.16200 5.19300 5.28714 5.37847 5.44699 5.62929 5.83909 5.92987 6.03012 6.11309 6.33032 6.37168 6.61622 6.89027 6.99447 7.06351 7.66750 8.21054 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.041153 B = 0.002112 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.232631 B =13257.304768 C =13609.713783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.052 3.948 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.083 3.917 10 C -0.244 4.244 11 C -0.078 4.078 12 C 0.011 3.989 13 N -0.656 5.656 14 C 0.711 3.289 15 O -0.632 6.632 16 N -0.671 5.671 17 C 0.127 3.873 18 C -0.089 4.089 19 C -0.103 4.103 20 H 0.098 0.902 21 C -0.150 4.150 22 C 0.038 3.962 23 O -0.404 6.404 24 C 0.046 3.954 25 C 0.102 3.898 26 C -0.100 4.100 27 C -0.188 4.188 28 H 0.295 0.705 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.409 0.591 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 -18.030 13.583 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.080 3.920 10 C -0.264 4.264 11 C -0.098 4.098 12 C -0.083 4.083 13 N -0.303 5.303 14 C 0.415 3.585 15 O -0.513 6.513 16 N -0.411 5.411 17 C 0.005 3.995 18 C -0.108 4.108 19 C -0.123 4.123 20 H 0.116 0.884 21 C -0.188 4.188 22 C -0.038 4.038 23 O -0.323 6.323 24 C -0.030 4.030 25 C -0.019 4.019 26 C -0.121 4.121 27 C -0.207 4.207 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.245 0.755 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.141 0.859 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.836 -17.891 13.296 23.316 hybrid contribution 0.318 0.886 -0.432 1.036 sum -6.518 -17.005 12.864 22.297 Atomic orbital electron populations 1.69945 1.09345 1.31467 1.31434 1.26732 0.95110 1.04430 0.90517 0.85362 0.79606 0.76127 0.79679 1.18396 1.18371 1.18640 1.19684 1.05772 0.95318 1.32519 0.90764 1.17902 0.90851 0.92304 0.90953 1.20717 1.07829 0.92762 1.05101 1.20402 0.97387 0.97334 0.94702 1.16903 1.05600 0.85537 1.00224 1.41773 1.12315 1.14982 1.61219 1.15769 0.84067 0.80439 0.78211 1.90868 1.18826 1.81683 1.59922 1.49261 1.16382 1.17237 1.58228 1.23274 0.99054 0.83035 0.94183 1.23036 0.94853 0.95354 0.97567 1.22473 0.95804 0.93543 1.00432 0.88407 1.23010 0.99642 0.99425 0.96735 1.23567 0.80891 1.02202 0.97140 1.89112 1.25049 1.40887 1.77284 1.23615 1.00384 0.86705 0.92331 1.23646 0.86005 0.98587 0.93661 1.20404 1.01014 0.90743 0.99913 1.20641 1.03155 0.97137 0.99803 0.89453 0.89048 0.88531 0.75501 0.91178 0.88775 0.87356 0.89835 0.89574 0.88464 0.91808 0.91446 0.87929 0.87719 0.88737 0.85905 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.92 11.78 21.82 0.26 -40.67 16 2 C 0.05 2.60 4.77 85.24 0.41 3.01 16 3 Si 0.97 37.81 29.66 68.60 2.03 39.84 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.51 -28.09 8.94 23.39 0.21 -27.88 16 8 H 0.07 4.06 8.01 -2.91 -0.02 4.04 16 9 C 0.08 4.67 5.57 -21.28 -0.12 4.55 16 10 C -0.24 -13.40 9.74 22.48 0.22 -13.19 16 11 C -0.08 -4.04 8.59 22.13 0.19 -3.85 16 12 C 0.01 0.51 6.25 38.56 0.24 0.75 16 13 N -0.66 -24.01 5.30 -316.80 -1.68 -25.69 16 14 C 0.71 26.68 8.57 179.06 1.53 28.21 16 15 O -0.63 -30.27 14.69 -3.95 -0.06 -30.33 16 16 N -0.67 -16.82 3.61 -854.00 -3.08 -19.90 16 17 C 0.13 2.28 7.82 86.49 0.68 2.96 16 18 C -0.09 -0.99 3.09 -10.13 -0.03 -1.02 16 19 C -0.10 -0.87 2.87 -9.78 -0.03 -0.90 16 20 H 0.10 0.72 8.01 -2.39 -0.02 0.71 16 21 C -0.15 -1.26 6.47 31.61 0.20 -1.06 16 22 C 0.04 0.40 7.63 72.49 0.55 0.95 16 23 O -0.40 -6.17 11.65 -148.98 -1.74 -7.90 16 24 C 0.05 0.46 7.19 72.48 0.52 0.98 16 25 C 0.10 1.38 8.02 86.44 0.69 2.08 16 26 C -0.10 -4.65 9.90 22.13 0.22 -4.43 16 27 C -0.19 -9.91 8.74 22.48 0.20 -9.72 16 28 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 29 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.10 5.05 6.45 -2.91 -0.02 5.03 16 31 H 0.41 11.55 8.44 -92.71 -0.78 10.77 16 32 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16 34 H 0.11 1.20 8.03 -2.38 -0.02 1.18 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.67 7.47 -2.39 -0.02 0.65 16 37 H 0.10 0.82 8.14 -2.38 -0.02 0.81 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.60 7.79 -2.39 -0.02 0.58 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.10 1.04 8.00 -2.39 -0.02 1.02 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 44 H 0.10 5.35 6.53 -2.91 -0.02 5.33 16 Total: -1.00 -73.99 362.27 1.65 -72.34 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.23 Total: 30.85 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 5.69 Total: -18.55 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -4.51 Total: -86.25 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.79 Total: -38.23 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -73.99 1.65 -72.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366388477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.567 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds