Wall clock time and date at job start Tue Mar 31 2020 11:20:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30881 * 1
3 3 Si 1.86799 * 120.00123 * 2 1
4 4 H 1.48491 * 109.47158 * 274.98835 * 3 2 1
5 5 H 1.48504 * 109.46955 * 34.98540 * 3 2 1
6 6 H 1.48500 * 109.46978 * 154.98190 * 3 2 1
7 7 C 1.39897 * 119.99777 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99551 * 147.63601 * 7 2 1
9 9 C 1.41156 * 119.99758 * 327.63507 * 7 2 1
10 10 C 1.40871 * 120.15796 * 157.92064 * 9 7 2
11 11 C 1.36376 * 119.82437 * 180.02562 * 10 9 7
12 12 C 1.39476 * 120.16994 * 0.02562 * 11 10 9
13 13 N 1.39245 * 119.83274 * 179.97438 * 12 11 10
14 14 C 1.34779 * 120.00039 * 37.78652 * 13 12 11
15 15 O 1.21573 * 119.99842 * 356.70123 * 14 13 12
16 16 N 1.34772 * 119.99613 * 176.69340 * 14 13 12
17 17 C 1.47583 * 134.48956 * 179.97438 * 16 14 13
18 18 C 1.53946 * 86.11566 * 155.36405 * 17 16 14
19 19 C 1.53008 * 113.74190 * 137.95769 * 18 17 16
20 20 H 1.09004 * 110.45544 * 301.22460 * 19 18 17
21 21 C 1.54508 * 110.51142 * 63.82565 * 19 18 17
22 22 C 1.54486 * 104.05750 * 118.78507 * 21 19 18
23 23 O 1.44423 * 104.80531 * 23.97855 * 22 21 19
24 24 C 1.44426 * 105.27413 * 319.48617 * 23 22 21
25 25 C 1.47817 * 134.46177 * 359.87565 * 16 14 13
26 26 C 1.39477 * 120.33608 * 0.24801 * 12 11 10
27 27 C 1.36375 * 120.16359 * 359.45112 * 26 12 11
28 28 H 0.97002 * 120.00094 * 0.02562 * 1 2 3
29 29 H 1.07997 * 120.09074 * 0.04209 * 10 9 7
30 30 H 1.08003 * 119.91128 * 180.02562 * 11 10 9
31 31 H 0.97000 * 119.99919 * 217.79097 * 13 12 11
32 32 H 1.09009 * 113.76918 * 41.06731 * 17 16 14
33 33 H 1.08999 * 113.87873 * 269.67826 * 17 16 14
34 34 H 1.09005 * 113.74263 * 269.15640 * 18 17 16
35 35 H 1.08995 * 110.51270 * 237.42837 * 21 19 18
36 36 H 1.08995 * 110.51310 * 0.14444 * 21 19 18
37 37 H 1.09004 * 110.36889 * 142.81292 * 22 21 19
38 38 H 1.09002 * 110.36904 * 265.14163 * 22 21 19
39 39 H 1.08993 * 110.37224 * 281.68028 * 24 23 22
40 40 H 1.08999 * 110.37082 * 159.34152 * 24 23 22
41 41 H 1.08996 * 113.77124 * 90.37453 * 25 16 14
42 42 H 1.09002 * 113.83265 * 318.91255 * 25 16 14
43 43 H 1.07998 * 119.92000 * 179.69875 * 26 12 11
44 44 H 1.07998 * 120.08688 * 180.29655 * 27 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3088 0.0000 0.0000
3 14 2.2428 1.6177 0.0000
4 1 2.3849 2.1072 -1.3947
5 1 1.4969 2.6199 0.8028
6 1 3.5891 1.4120 0.5921
7 6 2.0082 -1.2116 0.0005
8 1 2.9624 -1.2844 -0.5001
9 6 1.4668 -2.3387 0.6555
10 6 1.8846 -3.6350 0.2953
11 6 1.3567 -4.7192 0.9322
12 6 0.4051 -4.5471 1.9373
13 7 -0.1297 -5.6591 2.5825
14 6 0.6553 -6.7184 2.8619
15 8 1.8152 -6.7283 2.4976
16 7 0.1546 -7.7666 3.5453
17 6 0.7041 -9.0539 4.0131
18 6 -0.3969 -9.0135 5.0884
19 6 -1.0804 -10.3625 5.3212
20 1 -1.5323 -10.7250 4.3979
21 6 -0.0696 -11.3939 5.8704
22 6 -0.6419 -11.7812 7.2521
23 8 -2.0545 -11.4952 7.1598
24 6 -2.1437 -10.2486 6.4359
25 6 -1.1653 -8.0870 4.1285
26 6 -0.0177 -3.2671 2.2954
27 6 0.5056 -2.1731 1.6718
28 1 -0.4850 0.8401 -0.0004
29 1 2.6213 -3.7698 -0.4828
30 1 1.6763 -5.7136 0.6575
31 1 -1.0673 -5.6714 2.8309
32 1 1.7143 -8.9800 4.4158
33 1 0.5899 -9.8684 3.2978
34 1 -0.0884 -8.5281 6.0143
35 1 -0.0218 -12.2663 5.2187
36 1 0.9165 -10.9422 5.9785
37 1 -0.4813 -12.8419 7.4456
38 1 -0.1829 -11.1781 8.0355
39 1 -1.9152 -9.4104 7.0941
40 1 -3.1370 -10.1319 6.0024
41 1 -1.8306 -8.6158 3.4460
42 1 -1.6451 -7.2424 4.6230
43 1 -0.7585 -3.1419 3.0712
44 1 0.1809 -1.1823 1.9534
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000366388477.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:20:58
Heat of formation + Delta-G solvation = -36.773562 kcal
Electronic energy + Delta-G solvation = -25273.902069 eV
Core-core repulsion = 21577.273296 eV
Total energy + Delta-G solvation = -3696.628774 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.76015 -40.59381 -39.48250 -38.47998 -36.15326 -34.81290 -33.64181 -31.49993
-31.18133 -30.42222 -28.91526 -27.20267 -26.48545 -24.05051 -23.43575 -23.03805
-22.38300 -21.08461 -20.46869 -19.33076 -19.01534 -18.05651 -17.35854 -17.19533
-17.03564 -16.52708 -16.22471 -16.01830 -15.73423 -15.32334 -14.88065 -14.74166
-14.46970 -14.38575 -13.97890 -13.82797 -13.68697 -13.56861 -13.35675 -12.84407
-12.79363 -12.72146 -12.68141 -12.33729 -12.27810 -12.05112 -11.85186 -11.59910
-11.46206 -11.35972 -11.18416 -10.88043 -10.67996 -10.52096 -9.73124 -9.48968
-8.97540 -8.70954 -6.22737 0.85033 1.12366 1.37682 1.43099 1.53099
1.59622 2.16459 2.21021 2.65358 2.97581 3.13359 3.22393 3.68056
3.72826 3.90437 4.00745 4.14059 4.26241 4.36477 4.43263 4.46098
4.47501 4.49390 4.53071 4.59285 4.63467 4.78524 4.89202 4.91169
4.92876 4.98637 5.11558 5.15078 5.16200 5.19300 5.28714 5.37847
5.44699 5.62929 5.83909 5.92987 6.03012 6.11309 6.33032 6.37168
6.61622 6.89027 6.99447 7.06351 7.66750 8.21054
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.041153 B = 0.002112 C = 0.002057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 680.232631 B =13257.304768 C =13609.713783
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.798 5.798
2 C 0.052 3.948
3 Si 0.972 3.028
4 H -0.259 1.259
5 H -0.260 1.260
6 H -0.262 1.262
7 C -0.505 4.505
8 H 0.074 0.926
9 C 0.083 3.917
10 C -0.244 4.244
11 C -0.078 4.078
12 C 0.011 3.989
13 N -0.656 5.656
14 C 0.711 3.289
15 O -0.632 6.632
16 N -0.671 5.671
17 C 0.127 3.873
18 C -0.089 4.089
19 C -0.103 4.103
20 H 0.098 0.902
21 C -0.150 4.150
22 C 0.038 3.962
23 O -0.404 6.404
24 C 0.046 3.954
25 C 0.102 3.898
26 C -0.100 4.100
27 C -0.188 4.188
28 H 0.295 0.705
29 H 0.091 0.909
30 H 0.097 0.903
31 H 0.409 0.591
32 H 0.070 0.930
33 H 0.094 0.906
34 H 0.108 0.892
35 H 0.083 0.917
36 H 0.086 0.914
37 H 0.097 0.903
38 H 0.064 0.936
39 H 0.067 0.933
40 H 0.103 0.897
41 H 0.105 0.895
42 H 0.094 0.906
43 H 0.123 0.877
44 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.329 -18.030 13.583 23.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.422 5.422
2 C -0.168 4.168
3 Si 0.792 3.208
4 H -0.184 1.184
5 H -0.184 1.184
6 H -0.186 1.186
7 C -0.533 4.533
8 H 0.092 0.908
9 C 0.080 3.920
10 C -0.264 4.264
11 C -0.098 4.098
12 C -0.083 4.083
13 N -0.303 5.303
14 C 0.415 3.585
15 O -0.513 6.513
16 N -0.411 5.411
17 C 0.005 3.995
18 C -0.108 4.108
19 C -0.123 4.123
20 H 0.116 0.884
21 C -0.188 4.188
22 C -0.038 4.038
23 O -0.323 6.323
24 C -0.030 4.030
25 C -0.019 4.019
26 C -0.121 4.121
27 C -0.207 4.207
28 H 0.105 0.895
29 H 0.110 0.890
30 H 0.115 0.885
31 H 0.245 0.755
32 H 0.088 0.912
33 H 0.112 0.888
34 H 0.126 0.874
35 H 0.102 0.898
36 H 0.104 0.896
37 H 0.115 0.885
38 H 0.082 0.918
39 H 0.086 0.914
40 H 0.121 0.879
41 H 0.123 0.877
42 H 0.113 0.887
43 H 0.141 0.859
44 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -6.836 -17.891 13.296 23.316
hybrid contribution 0.318 0.886 -0.432 1.036
sum -6.518 -17.005 12.864 22.297
Atomic orbital electron populations
1.69945 1.09345 1.31467 1.31434 1.26732 0.95110 1.04430 0.90517
0.85362 0.79606 0.76127 0.79679 1.18396 1.18371 1.18640 1.19684
1.05772 0.95318 1.32519 0.90764 1.17902 0.90851 0.92304 0.90953
1.20717 1.07829 0.92762 1.05101 1.20402 0.97387 0.97334 0.94702
1.16903 1.05600 0.85537 1.00224 1.41773 1.12315 1.14982 1.61219
1.15769 0.84067 0.80439 0.78211 1.90868 1.18826 1.81683 1.59922
1.49261 1.16382 1.17237 1.58228 1.23274 0.99054 0.83035 0.94183
1.23036 0.94853 0.95354 0.97567 1.22473 0.95804 0.93543 1.00432
0.88407 1.23010 0.99642 0.99425 0.96735 1.23567 0.80891 1.02202
0.97140 1.89112 1.25049 1.40887 1.77284 1.23615 1.00384 0.86705
0.92331 1.23646 0.86005 0.98587 0.93661 1.20404 1.01014 0.90743
0.99913 1.20641 1.03155 0.97137 0.99803 0.89453 0.89048 0.88531
0.75501 0.91178 0.88775 0.87356 0.89835 0.89574 0.88464 0.91808
0.91446 0.87929 0.87719 0.88737 0.85905 0.88134
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -40.92 11.78 21.82 0.26 -40.67 16
2 C 0.05 2.60 4.77 85.24 0.41 3.01 16
3 Si 0.97 37.81 29.66 68.60 2.03 39.84 16
4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16
5 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16
6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16
7 C -0.51 -28.09 8.94 23.39 0.21 -27.88 16
8 H 0.07 4.06 8.01 -2.91 -0.02 4.04 16
9 C 0.08 4.67 5.57 -21.28 -0.12 4.55 16
10 C -0.24 -13.40 9.74 22.48 0.22 -13.19 16
11 C -0.08 -4.04 8.59 22.13 0.19 -3.85 16
12 C 0.01 0.51 6.25 38.56 0.24 0.75 16
13 N -0.66 -24.01 5.30 -316.80 -1.68 -25.69 16
14 C 0.71 26.68 8.57 179.06 1.53 28.21 16
15 O -0.63 -30.27 14.69 -3.95 -0.06 -30.33 16
16 N -0.67 -16.82 3.61 -854.00 -3.08 -19.90 16
17 C 0.13 2.28 7.82 86.49 0.68 2.96 16
18 C -0.09 -0.99 3.09 -10.13 -0.03 -1.02 16
19 C -0.10 -0.87 2.87 -9.78 -0.03 -0.90 16
20 H 0.10 0.72 8.01 -2.39 -0.02 0.71 16
21 C -0.15 -1.26 6.47 31.61 0.20 -1.06 16
22 C 0.04 0.40 7.63 72.49 0.55 0.95 16
23 O -0.40 -6.17 11.65 -148.98 -1.74 -7.90 16
24 C 0.05 0.46 7.19 72.48 0.52 0.98 16
25 C 0.10 1.38 8.02 86.44 0.69 2.08 16
26 C -0.10 -4.65 9.90 22.13 0.22 -4.43 16
27 C -0.19 -9.91 8.74 22.48 0.20 -9.72 16
28 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16
29 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16
30 H 0.10 5.05 6.45 -2.91 -0.02 5.03 16
31 H 0.41 11.55 8.44 -92.71 -0.78 10.77 16
32 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16
33 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16
34 H 0.11 1.20 8.03 -2.38 -0.02 1.18 16
35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16
36 H 0.09 0.67 7.47 -2.39 -0.02 0.65 16
37 H 0.10 0.82 8.14 -2.38 -0.02 0.81 16
38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
39 H 0.07 0.60 7.79 -2.39 -0.02 0.58 16
40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16
41 H 0.10 1.04 8.00 -2.39 -0.02 1.02 16
42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
43 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16
44 H 0.10 5.35 6.53 -2.91 -0.02 5.33 16
Total: -1.00 -73.99 362.27 1.65 -72.34
By element:
Atomic # 1 Polarization: 30.61 SS G_CDS: 0.23 Total: 30.85 kcal
Atomic # 6 Polarization: -24.23 SS G_CDS: 5.69 Total: -18.55 kcal
Atomic # 7 Polarization: -81.75 SS G_CDS: -4.51 Total: -86.25 kcal
Atomic # 8 Polarization: -36.44 SS G_CDS: -1.79 Total: -38.23 kcal
Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal
Total: -73.99 1.65 -72.34 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000366388477.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.567 kcal
(2) G-P(sol) polarization free energy of solvation -73.993 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.426 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.774 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds