Wall clock time and date at job start Tue Mar 31 2020 11:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48497 * 109.47368 * 264.64154 * 3 2 1 5 5 H 1.48509 * 109.46917 * 24.63752 * 3 2 1 6 6 H 1.48496 * 109.46950 * 144.63780 * 3 2 1 7 7 C 1.37875 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99669 * 4.85881 * 7 2 1 9 9 C 1.50694 * 119.99984 * 184.85431 * 7 2 1 10 10 H 1.08999 * 109.47261 * 34.72715 * 9 7 2 11 11 C 1.53003 * 109.47152 * 154.72565 * 9 7 2 12 12 C 1.50697 * 109.47069 * 295.00149 * 11 9 7 13 13 O 1.21285 * 120.00095 * 0.02562 * 12 11 9 14 14 N 1.34773 * 120.00115 * 180.02562 * 12 11 9 15 15 C 1.46504 * 120.00094 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47047 * 179.97438 * 15 14 12 17 17 H 1.09005 * 110.85897 * 308.78780 * 16 15 14 18 18 C 1.54477 * 110.97013 * 72.62096 * 16 15 14 19 19 N 1.46758 * 105.47126 * 143.53259 * 18 16 15 20 20 C 1.34419 * 111.30319 * 342.98631 * 19 18 16 21 21 O 1.21285 * 124.94022 * 180.44338 * 20 19 18 22 22 C 1.51276 * 110.11595 * 0.40636 * 20 19 18 23 23 C 1.50702 * 109.47066 * 274.72265 * 9 7 2 24 24 C 1.38242 * 119.99789 * 115.53921 * 23 9 7 25 25 C 1.38235 * 120.00016 * 179.97438 * 24 23 9 26 26 C 1.38228 * 119.99912 * 0.06713 * 25 24 23 27 27 C 1.38241 * 120.00398 * 359.88492 * 26 25 24 28 28 C 1.38233 * 120.00344 * 295.51168 * 23 9 7 29 29 H 0.97003 * 119.99975 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47245 * 55.00245 * 11 9 7 31 31 H 1.08996 * 109.47223 * 175.00030 * 11 9 7 32 32 H 0.97001 * 120.00012 * 359.97438 * 14 12 11 33 33 H 1.08994 * 109.46955 * 300.00032 * 15 14 12 34 34 H 1.09001 * 109.47219 * 60.00278 * 15 14 12 35 35 H 1.08993 * 110.24368 * 262.53333 * 18 16 15 36 36 H 1.09001 * 110.24221 * 24.53586 * 18 16 15 37 37 H 0.97001 * 124.34896 * 163.00247 * 19 18 16 38 38 H 1.09003 * 110.48891 * 257.57777 * 22 20 19 39 39 H 1.09004 * 110.60115 * 134.98898 * 22 20 19 40 40 H 1.08002 * 119.99883 * 359.69705 * 24 23 9 41 41 H 1.07999 * 119.99882 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.00302 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.00048 * 180.11440 * 27 26 25 44 44 H 1.07999 * 119.99960 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6100 1.9810 -1.3939 5 1 1.3945 2.6827 0.5837 6 1 3.4855 1.4754 0.8103 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1277 -0.0783 9 6 3.5074 -1.1964 0.1110 10 1 3.8256 -0.3776 0.7563 11 6 3.9729 -2.5262 0.7074 12 6 3.4689 -2.6458 2.1226 13 8 2.8026 -1.7553 2.6064 14 7 3.7586 -3.7423 2.8507 15 6 3.2692 -3.8584 4.2267 16 6 3.7346 -5.1883 4.8231 17 1 3.4859 -6.0184 4.1618 18 6 5.2487 -5.1578 5.1280 19 7 5.4142 -5.9275 6.3664 20 6 4.2432 -6.0761 7.0094 21 8 4.0974 -6.6632 8.0606 22 6 3.1336 -5.4036 6.2314 23 6 4.1120 -1.0210 -1.2583 24 6 4.8539 0.1093 -1.5466 25 6 5.4089 0.2699 -2.8024 26 6 5.2209 -0.6989 -3.7703 27 6 4.4798 -1.8297 -3.4817 28 6 3.9252 -1.9905 -2.2257 29 1 -0.4850 0.8401 -0.0004 30 1 3.5797 -3.3495 0.1109 31 1 5.0622 -2.5640 0.7053 32 1 4.2912 -4.4547 2.4637 33 1 3.6624 -3.0350 4.8228 34 1 2.1798 -3.8209 4.2292 35 1 5.8063 -5.6247 4.3162 36 1 5.5832 -4.1308 5.2746 37 1 6.2601 -6.2832 6.6808 38 1 2.8744 -4.4473 6.6858 39 1 2.2571 -6.0494 6.1776 40 1 4.9961 0.8689 -0.7922 41 1 5.9881 1.1531 -3.0278 42 1 5.6548 -0.5736 -4.7513 43 1 4.3345 -2.5875 -4.2373 44 1 3.3463 -2.8739 -2.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412461550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:36 Heat of formation + Delta-G solvation = -51.576932 kcal Electronic energy + Delta-G solvation = -25714.717453 eV Core-core repulsion = 22017.446757 eV Total energy + Delta-G solvation = -3697.270696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.63472 -39.25434 -38.43525 -36.96839 -34.63938 -33.96974 -31.90535 -31.58887 -30.28203 -29.19406 -28.06552 -26.42679 -25.01105 -22.60997 -21.94469 -21.15359 -20.87026 -20.26108 -19.18723 -17.62549 -17.01320 -16.96782 -16.46092 -15.85308 -15.33789 -15.21957 -15.01705 -14.64287 -14.33702 -14.00893 -13.91779 -13.75183 -13.48194 -13.04620 -12.87729 -12.76031 -12.62554 -12.44839 -12.24798 -11.93094 -11.84044 -11.45260 -11.31555 -11.11655 -10.74317 -10.61363 -10.39445 -10.17762 -9.91591 -9.62036 -9.45671 -9.22325 -9.03764 -8.71706 -8.48397 -8.25334 -7.83741 -6.01081 -3.97396 2.03716 2.10275 2.31842 3.04131 3.38409 3.39722 3.41887 3.43988 3.47628 4.02549 4.12313 4.39432 4.47107 4.52749 4.70329 5.01250 5.13268 5.19684 5.24591 5.40913 5.46981 5.47413 5.49924 5.58360 5.64035 5.77616 5.88644 5.91741 5.96583 6.02670 6.17614 6.28154 6.45090 6.52919 6.65275 6.66731 6.75331 6.77652 7.00592 7.09606 7.20914 7.55271 7.67309 7.77655 7.92463 7.94239 8.49718 8.92676 8.98332 9.62115 11.12059 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.003049 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.647279 B = 9181.085135 C =10191.548198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.083 3.917 3 Si 0.868 3.132 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.483 4.483 8 H 0.072 0.928 9 C 0.048 3.952 10 H 0.054 0.946 11 C -0.115 4.115 12 C 0.513 3.487 13 O -0.496 6.496 14 N -0.750 5.750 15 C 0.132 3.868 16 C -0.112 4.112 17 H 0.099 0.901 18 C 0.102 3.898 19 N -0.733 5.733 20 C 0.521 3.479 21 O -0.538 6.538 22 C -0.150 4.150 23 C -0.039 4.039 24 C -0.142 4.142 25 C -0.122 4.122 26 C -0.151 4.151 27 C -0.124 4.124 28 C -0.107 4.107 29 H 0.262 0.738 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.393 0.607 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.409 0.591 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.238 -9.930 3.341 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.119 4.119 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.520 4.520 8 H 0.090 0.910 9 C 0.029 3.971 10 H 0.072 0.928 11 C -0.155 4.155 12 C 0.299 3.701 13 O -0.367 6.367 14 N -0.406 5.406 15 C 0.007 3.993 16 C -0.132 4.132 17 H 0.118 0.882 18 C -0.022 4.022 19 N -0.389 5.389 20 C 0.307 3.693 21 O -0.415 6.415 22 C -0.191 4.191 23 C -0.039 4.039 24 C -0.160 4.160 25 C -0.140 4.140 26 C -0.169 4.169 27 C -0.143 4.143 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.226 0.774 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.248 0.752 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.348 -9.363 4.215 16.060 hybrid contribution 0.918 0.544 -0.297 1.107 sum 13.266 -8.819 3.919 16.405 Atomic orbital electron populations 1.69883 1.06282 1.26809 1.50540 1.24869 0.94510 0.98753 0.93812 0.87056 0.80360 0.84263 0.78681 1.19817 1.21952 1.18776 1.20603 0.87216 0.94453 1.49693 0.91038 1.18265 0.97120 0.93358 0.88356 0.92770 1.21606 0.99578 1.01963 0.92330 1.20831 0.79950 0.81165 0.88149 1.90770 1.35562 1.38927 1.71481 1.46126 1.57905 1.22661 1.13932 1.21200 1.00206 0.94527 0.83322 1.22425 0.94241 0.99804 0.96687 0.88235 1.22252 0.96727 0.96886 0.86355 1.46261 1.10677 1.56654 1.25306 1.20918 0.85210 0.78730 0.84417 1.90764 1.84715 1.43492 1.22515 1.22354 0.98373 1.03625 0.94700 1.20788 0.91358 0.92738 0.99051 1.21092 0.99515 0.98519 0.96892 1.20966 1.00562 0.98600 0.93883 1.20860 1.01881 0.95453 0.98687 1.21051 0.98727 0.97672 0.96808 1.20928 0.99088 0.99784 0.92738 0.92801 0.89706 0.91205 0.77363 0.91348 0.90722 0.89939 0.90347 0.75231 0.87088 0.87456 0.87254 0.87320 0.87357 0.87132 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 22.16 24.76 -169.99 -4.21 17.95 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.26 -6.38 5.94 56.52 0.34 -6.05 16 7 C -0.48 -12.92 7.18 -34.44 -0.25 -13.17 16 8 H 0.07 2.07 8.05 -52.49 -0.42 1.65 16 9 C 0.05 1.06 1.24 -92.92 -0.12 0.94 16 10 H 0.05 1.29 5.26 -51.93 -0.27 1.02 16 11 C -0.11 -1.94 4.84 -27.88 -0.13 -2.07 16 12 C 0.51 8.96 7.58 -10.99 -0.08 8.88 16 13 O -0.50 -11.43 14.98 5.55 0.08 -11.35 16 14 N -0.75 -8.76 5.50 -60.29 -0.33 -9.09 16 15 C 0.13 1.36 4.98 -4.04 -0.02 1.34 16 16 C -0.11 -0.78 3.16 -88.99 -0.28 -1.06 16 17 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 18 C 0.10 0.60 7.29 -3.13 -0.02 0.58 16 19 N -0.73 -5.41 6.24 -59.21 -0.37 -5.78 16 20 C 0.52 5.38 8.43 -10.86 -0.09 5.29 16 21 O -0.54 -7.91 18.03 5.55 0.10 -7.81 16 22 C -0.15 -1.19 6.42 -26.74 -0.17 -1.36 16 23 C -0.04 -0.78 4.30 -104.62 -0.45 -1.23 16 24 C -0.14 -2.76 8.16 -39.58 -0.32 -3.09 16 25 C -0.12 -2.07 10.05 -39.59 -0.40 -2.47 16 26 C -0.15 -2.39 10.05 -39.58 -0.40 -2.78 16 27 C -0.12 -2.02 10.05 -39.58 -0.40 -2.42 16 28 C -0.11 -1.97 8.94 -39.58 -0.35 -2.33 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.08 1.33 7.34 -51.93 -0.38 0.94 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.39 3.20 8.47 -40.82 -0.35 2.85 16 33 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.48 7.74 -51.93 -0.40 0.08 16 37 H 0.41 2.46 8.96 -40.82 -0.37 2.09 16 38 H 0.11 0.84 7.90 -51.93 -0.41 0.43 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.11 2.12 6.74 -52.49 -0.35 1.77 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.12 2.07 7.38 -52.49 -0.39 1.68 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -36.55 360.73 -8.44 -44.99 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.34 Total: 5.24 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.59 Total: -12.66 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.07 Total: -41.80 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.16 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.21 Total: 17.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.55 -8.44 -44.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412461550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.586 kcal (2) G-P(sol) polarization free energy of solvation -36.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds