Wall clock time and date at job start Tue Mar 31 2020 11:16:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86796 * 120.00205 * 2 1
4 4 H 1.48497 * 109.47368 * 264.64154 * 3 2 1
5 5 H 1.48509 * 109.46917 * 24.63752 * 3 2 1
6 6 H 1.48496 * 109.46950 * 144.63780 * 3 2 1
7 7 C 1.37875 * 119.99833 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99669 * 4.85881 * 7 2 1
9 9 C 1.50694 * 119.99984 * 184.85431 * 7 2 1
10 10 H 1.08999 * 109.47261 * 34.72715 * 9 7 2
11 11 C 1.53003 * 109.47152 * 154.72565 * 9 7 2
12 12 C 1.50697 * 109.47069 * 295.00149 * 11 9 7
13 13 O 1.21285 * 120.00095 * 0.02562 * 12 11 9
14 14 N 1.34773 * 120.00115 * 180.02562 * 12 11 9
15 15 C 1.46504 * 120.00094 * 179.97438 * 14 12 11
16 16 C 1.53003 * 109.47047 * 179.97438 * 15 14 12
17 17 H 1.09005 * 110.85897 * 308.78780 * 16 15 14
18 18 C 1.54477 * 110.97013 * 72.62096 * 16 15 14
19 19 N 1.46758 * 105.47126 * 143.53259 * 18 16 15
20 20 C 1.34419 * 111.30319 * 342.98631 * 19 18 16
21 21 O 1.21285 * 124.94022 * 180.44338 * 20 19 18
22 22 C 1.51276 * 110.11595 * 0.40636 * 20 19 18
23 23 C 1.50702 * 109.47066 * 274.72265 * 9 7 2
24 24 C 1.38242 * 119.99789 * 115.53921 * 23 9 7
25 25 C 1.38235 * 120.00016 * 179.97438 * 24 23 9
26 26 C 1.38228 * 119.99912 * 0.06713 * 25 24 23
27 27 C 1.38241 * 120.00398 * 359.88492 * 26 25 24
28 28 C 1.38233 * 120.00344 * 295.51168 * 23 9 7
29 29 H 0.97003 * 119.99975 * 0.02562 * 1 2 3
30 30 H 1.09001 * 109.47245 * 55.00245 * 11 9 7
31 31 H 1.08996 * 109.47223 * 175.00030 * 11 9 7
32 32 H 0.97001 * 120.00012 * 359.97438 * 14 12 11
33 33 H 1.08994 * 109.46955 * 300.00032 * 15 14 12
34 34 H 1.09001 * 109.47219 * 60.00278 * 15 14 12
35 35 H 1.08993 * 110.24368 * 262.53333 * 18 16 15
36 36 H 1.09001 * 110.24221 * 24.53586 * 18 16 15
37 37 H 0.97001 * 124.34896 * 163.00247 * 19 18 16
38 38 H 1.09003 * 110.48891 * 257.57777 * 22 20 19
39 39 H 1.09004 * 110.60115 * 134.98898 * 22 20 19
40 40 H 1.08002 * 119.99883 * 359.69705 * 24 23 9
41 41 H 1.07999 * 119.99882 * 179.97438 * 25 24 23
42 42 H 1.08004 * 120.00302 * 180.02562 * 26 25 24
43 43 H 1.07996 * 120.00048 * 180.11440 * 27 26 25
44 44 H 1.07999 * 119.99960 * 359.97438 * 28 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.6100 1.9810 -1.3939
5 1 1.3945 2.6827 0.5837
6 1 3.4855 1.4754 0.8103
7 6 2.0045 -1.1941 0.0005
8 1 1.4673 -2.1277 -0.0783
9 6 3.5074 -1.1964 0.1110
10 1 3.8256 -0.3776 0.7563
11 6 3.9729 -2.5262 0.7074
12 6 3.4689 -2.6458 2.1226
13 8 2.8026 -1.7553 2.6064
14 7 3.7586 -3.7423 2.8507
15 6 3.2692 -3.8584 4.2267
16 6 3.7346 -5.1883 4.8231
17 1 3.4859 -6.0184 4.1618
18 6 5.2487 -5.1578 5.1280
19 7 5.4142 -5.9275 6.3664
20 6 4.2432 -6.0761 7.0094
21 8 4.0974 -6.6632 8.0606
22 6 3.1336 -5.4036 6.2314
23 6 4.1120 -1.0210 -1.2583
24 6 4.8539 0.1093 -1.5466
25 6 5.4089 0.2699 -2.8024
26 6 5.2209 -0.6989 -3.7703
27 6 4.4798 -1.8297 -3.4817
28 6 3.9252 -1.9905 -2.2257
29 1 -0.4850 0.8401 -0.0004
30 1 3.5797 -3.3495 0.1109
31 1 5.0622 -2.5640 0.7053
32 1 4.2912 -4.4547 2.4637
33 1 3.6624 -3.0350 4.8228
34 1 2.1798 -3.8209 4.2292
35 1 5.8063 -5.6247 4.3162
36 1 5.5832 -4.1308 5.2746
37 1 6.2601 -6.2832 6.6808
38 1 2.8744 -4.4473 6.6858
39 1 2.2571 -6.0494 6.1776
40 1 4.9961 0.8689 -0.7922
41 1 5.9881 1.1531 -3.0278
42 1 5.6548 -0.5736 -4.7513
43 1 4.3345 -2.5875 -4.2373
44 1 3.3463 -2.8739 -2.0002
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000412461550.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:16:36
Heat of formation + Delta-G solvation = -51.576932 kcal
Electronic energy + Delta-G solvation = -25714.717453 eV
Core-core repulsion = 22017.446757 eV
Total energy + Delta-G solvation = -3697.270696 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.63472 -39.25434 -38.43525 -36.96839 -34.63938 -33.96974 -31.90535 -31.58887
-30.28203 -29.19406 -28.06552 -26.42679 -25.01105 -22.60997 -21.94469 -21.15359
-20.87026 -20.26108 -19.18723 -17.62549 -17.01320 -16.96782 -16.46092 -15.85308
-15.33789 -15.21957 -15.01705 -14.64287 -14.33702 -14.00893 -13.91779 -13.75183
-13.48194 -13.04620 -12.87729 -12.76031 -12.62554 -12.44839 -12.24798 -11.93094
-11.84044 -11.45260 -11.31555 -11.11655 -10.74317 -10.61363 -10.39445 -10.17762
-9.91591 -9.62036 -9.45671 -9.22325 -9.03764 -8.71706 -8.48397 -8.25334
-7.83741 -6.01081 -3.97396 2.03716 2.10275 2.31842 3.04131 3.38409
3.39722 3.41887 3.43988 3.47628 4.02549 4.12313 4.39432 4.47107
4.52749 4.70329 5.01250 5.13268 5.19684 5.24591 5.40913 5.46981
5.47413 5.49924 5.58360 5.64035 5.77616 5.88644 5.91741 5.96583
6.02670 6.17614 6.28154 6.45090 6.52919 6.65275 6.66731 6.75331
6.77652 7.00592 7.09606 7.20914 7.55271 7.67309 7.77655 7.92463
7.94239 8.49718 8.92676 8.98332 9.62115 11.12059
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.016776 B = 0.003049 C = 0.002747
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1668.647279 B = 9181.085135 C =10191.548198
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.083 3.917
3 Si 0.868 3.132
4 H -0.273 1.273
5 H -0.293 1.293
6 H -0.263 1.263
7 C -0.483 4.483
8 H 0.072 0.928
9 C 0.048 3.952
10 H 0.054 0.946
11 C -0.115 4.115
12 C 0.513 3.487
13 O -0.496 6.496
14 N -0.750 5.750
15 C 0.132 3.868
16 C -0.112 4.112
17 H 0.099 0.901
18 C 0.102 3.898
19 N -0.733 5.733
20 C 0.521 3.479
21 O -0.538 6.538
22 C -0.150 4.150
23 C -0.039 4.039
24 C -0.142 4.142
25 C -0.122 4.122
26 C -0.151 4.151
27 C -0.124 4.124
28 C -0.107 4.107
29 H 0.262 0.738
30 H 0.085 0.915
31 H 0.070 0.930
32 H 0.393 0.607
33 H 0.068 0.932
34 H 0.075 0.925
35 H 0.082 0.918
36 H 0.078 0.922
37 H 0.409 0.591
38 H 0.111 0.889
39 H 0.107 0.893
40 H 0.109 0.891
41 H 0.109 0.891
42 H 0.108 0.892
43 H 0.111 0.889
44 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.238 -9.930 3.341 16.882
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.119 4.119
3 Si 0.696 3.304
4 H -0.198 1.198
5 H -0.220 1.220
6 H -0.188 1.188
7 C -0.520 4.520
8 H 0.090 0.910
9 C 0.029 3.971
10 H 0.072 0.928
11 C -0.155 4.155
12 C 0.299 3.701
13 O -0.367 6.367
14 N -0.406 5.406
15 C 0.007 3.993
16 C -0.132 4.132
17 H 0.118 0.882
18 C -0.022 4.022
19 N -0.389 5.389
20 C 0.307 3.693
21 O -0.415 6.415
22 C -0.191 4.191
23 C -0.039 4.039
24 C -0.160 4.160
25 C -0.140 4.140
26 C -0.169 4.169
27 C -0.143 4.143
28 C -0.125 4.125
29 H 0.072 0.928
30 H 0.103 0.897
31 H 0.088 0.912
32 H 0.226 0.774
33 H 0.087 0.913
34 H 0.093 0.907
35 H 0.101 0.899
36 H 0.097 0.903
37 H 0.248 0.752
38 H 0.129 0.871
39 H 0.125 0.875
40 H 0.127 0.873
41 H 0.127 0.873
42 H 0.126 0.874
43 H 0.129 0.871
44 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 12.348 -9.363 4.215 16.060
hybrid contribution 0.918 0.544 -0.297 1.107
sum 13.266 -8.819 3.919 16.405
Atomic orbital electron populations
1.69883 1.06282 1.26809 1.50540 1.24869 0.94510 0.98753 0.93812
0.87056 0.80360 0.84263 0.78681 1.19817 1.21952 1.18776 1.20603
0.87216 0.94453 1.49693 0.91038 1.18265 0.97120 0.93358 0.88356
0.92770 1.21606 0.99578 1.01963 0.92330 1.20831 0.79950 0.81165
0.88149 1.90770 1.35562 1.38927 1.71481 1.46126 1.57905 1.22661
1.13932 1.21200 1.00206 0.94527 0.83322 1.22425 0.94241 0.99804
0.96687 0.88235 1.22252 0.96727 0.96886 0.86355 1.46261 1.10677
1.56654 1.25306 1.20918 0.85210 0.78730 0.84417 1.90764 1.84715
1.43492 1.22515 1.22354 0.98373 1.03625 0.94700 1.20788 0.91358
0.92738 0.99051 1.21092 0.99515 0.98519 0.96892 1.20966 1.00562
0.98600 0.93883 1.20860 1.01881 0.95453 0.98687 1.21051 0.98727
0.97672 0.96808 1.20928 0.99088 0.99784 0.92738 0.92801 0.89706
0.91205 0.77363 0.91348 0.90722 0.89939 0.90347 0.75231 0.87088
0.87456 0.87254 0.87320 0.87357 0.87132 0.86335
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16
2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16
3 Si 0.87 22.16 24.76 -169.99 -4.21 17.95 16
4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16
5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16
6 H -0.26 -6.38 5.94 56.52 0.34 -6.05 16
7 C -0.48 -12.92 7.18 -34.44 -0.25 -13.17 16
8 H 0.07 2.07 8.05 -52.49 -0.42 1.65 16
9 C 0.05 1.06 1.24 -92.92 -0.12 0.94 16
10 H 0.05 1.29 5.26 -51.93 -0.27 1.02 16
11 C -0.11 -1.94 4.84 -27.88 -0.13 -2.07 16
12 C 0.51 8.96 7.58 -10.99 -0.08 8.88 16
13 O -0.50 -11.43 14.98 5.55 0.08 -11.35 16
14 N -0.75 -8.76 5.50 -60.29 -0.33 -9.09 16
15 C 0.13 1.36 4.98 -4.04 -0.02 1.34 16
16 C -0.11 -0.78 3.16 -88.99 -0.28 -1.06 16
17 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16
18 C 0.10 0.60 7.29 -3.13 -0.02 0.58 16
19 N -0.73 -5.41 6.24 -59.21 -0.37 -5.78 16
20 C 0.52 5.38 8.43 -10.86 -0.09 5.29 16
21 O -0.54 -7.91 18.03 5.55 0.10 -7.81 16
22 C -0.15 -1.19 6.42 -26.74 -0.17 -1.36 16
23 C -0.04 -0.78 4.30 -104.62 -0.45 -1.23 16
24 C -0.14 -2.76 8.16 -39.58 -0.32 -3.09 16
25 C -0.12 -2.07 10.05 -39.59 -0.40 -2.47 16
26 C -0.15 -2.39 10.05 -39.58 -0.40 -2.78 16
27 C -0.12 -2.02 10.05 -39.58 -0.40 -2.42 16
28 C -0.11 -1.97 8.94 -39.58 -0.35 -2.33 16
29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16
30 H 0.08 1.33 7.34 -51.93 -0.38 0.94 16
31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16
32 H 0.39 3.20 8.47 -40.82 -0.35 2.85 16
33 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16
34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
36 H 0.08 0.48 7.74 -51.93 -0.40 0.08 16
37 H 0.41 2.46 8.96 -40.82 -0.37 2.09 16
38 H 0.11 0.84 7.90 -51.93 -0.41 0.43 16
39 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16
40 H 0.11 2.12 6.74 -52.49 -0.35 1.77 16
41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16
42 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16
43 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16
44 H 0.12 2.07 7.38 -52.49 -0.39 1.68 16
LS Contribution 360.73 15.07 5.44 5.44
Total: -1.00 -36.55 360.73 -8.44 -44.99
By element:
Atomic # 1 Polarization: 11.57 SS G_CDS: -6.34 Total: 5.24 kcal
Atomic # 6 Polarization: -9.07 SS G_CDS: -3.59 Total: -12.66 kcal
Atomic # 7 Polarization: -41.87 SS G_CDS: 0.07 Total: -41.80 kcal
Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.16 kcal
Atomic # 14 Polarization: 22.16 SS G_CDS: -4.21 Total: 17.95 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -36.55 -8.44 -44.99 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000412461550.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.586 kcal
(2) G-P(sol) polarization free energy of solvation -36.552 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds