Wall clock time and date at job start Tue Mar 31 2020 11:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48497 * 109.47368 * 264.64154 * 3 2 1 5 5 H 1.48509 * 109.46917 * 24.63752 * 3 2 1 6 6 H 1.48496 * 109.46950 * 144.63780 * 3 2 1 7 7 C 1.37875 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99669 * 4.85881 * 7 2 1 9 9 C 1.50694 * 119.99984 * 184.85431 * 7 2 1 10 10 H 1.08999 * 109.47261 * 34.72715 * 9 7 2 11 11 C 1.53003 * 109.47152 * 154.72565 * 9 7 2 12 12 C 1.50697 * 109.47069 * 295.00149 * 11 9 7 13 13 O 1.21285 * 120.00095 * 0.02562 * 12 11 9 14 14 N 1.34773 * 120.00115 * 180.02562 * 12 11 9 15 15 C 1.46504 * 120.00094 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47047 * 179.97438 * 15 14 12 17 17 H 1.09005 * 110.85897 * 308.78780 * 16 15 14 18 18 C 1.54477 * 110.97013 * 72.62096 * 16 15 14 19 19 N 1.46758 * 105.47126 * 143.53259 * 18 16 15 20 20 C 1.34419 * 111.30319 * 342.98631 * 19 18 16 21 21 O 1.21285 * 124.94022 * 180.44338 * 20 19 18 22 22 C 1.51276 * 110.11595 * 0.40636 * 20 19 18 23 23 C 1.50702 * 109.47066 * 274.72265 * 9 7 2 24 24 C 1.38242 * 119.99789 * 115.53921 * 23 9 7 25 25 C 1.38235 * 120.00016 * 179.97438 * 24 23 9 26 26 C 1.38228 * 119.99912 * 0.06713 * 25 24 23 27 27 C 1.38241 * 120.00398 * 359.88492 * 26 25 24 28 28 C 1.38233 * 120.00344 * 295.51168 * 23 9 7 29 29 H 0.97003 * 119.99975 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47245 * 55.00245 * 11 9 7 31 31 H 1.08996 * 109.47223 * 175.00030 * 11 9 7 32 32 H 0.97001 * 120.00012 * 359.97438 * 14 12 11 33 33 H 1.08994 * 109.46955 * 300.00032 * 15 14 12 34 34 H 1.09001 * 109.47219 * 60.00278 * 15 14 12 35 35 H 1.08993 * 110.24368 * 262.53333 * 18 16 15 36 36 H 1.09001 * 110.24221 * 24.53586 * 18 16 15 37 37 H 0.97001 * 124.34896 * 163.00247 * 19 18 16 38 38 H 1.09003 * 110.48891 * 257.57777 * 22 20 19 39 39 H 1.09004 * 110.60115 * 134.98898 * 22 20 19 40 40 H 1.08002 * 119.99883 * 359.69705 * 24 23 9 41 41 H 1.07999 * 119.99882 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.00302 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.00048 * 180.11440 * 27 26 25 44 44 H 1.07999 * 119.99960 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6100 1.9810 -1.3939 5 1 1.3945 2.6827 0.5837 6 1 3.4855 1.4754 0.8103 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1277 -0.0783 9 6 3.5074 -1.1964 0.1110 10 1 3.8256 -0.3776 0.7563 11 6 3.9729 -2.5262 0.7074 12 6 3.4689 -2.6458 2.1226 13 8 2.8026 -1.7553 2.6064 14 7 3.7586 -3.7423 2.8507 15 6 3.2692 -3.8584 4.2267 16 6 3.7346 -5.1883 4.8231 17 1 3.4859 -6.0184 4.1618 18 6 5.2487 -5.1578 5.1280 19 7 5.4142 -5.9275 6.3664 20 6 4.2432 -6.0761 7.0094 21 8 4.0974 -6.6632 8.0606 22 6 3.1336 -5.4036 6.2314 23 6 4.1120 -1.0210 -1.2583 24 6 4.8539 0.1093 -1.5466 25 6 5.4089 0.2699 -2.8024 26 6 5.2209 -0.6989 -3.7703 27 6 4.4798 -1.8297 -3.4817 28 6 3.9252 -1.9905 -2.2257 29 1 -0.4850 0.8401 -0.0004 30 1 3.5797 -3.3495 0.1109 31 1 5.0622 -2.5640 0.7053 32 1 4.2912 -4.4547 2.4637 33 1 3.6624 -3.0350 4.8228 34 1 2.1798 -3.8209 4.2292 35 1 5.8063 -5.6247 4.3162 36 1 5.5832 -4.1308 5.2746 37 1 6.2601 -6.2832 6.6808 38 1 2.8744 -4.4473 6.6858 39 1 2.2571 -6.0494 6.1776 40 1 4.9961 0.8689 -0.7922 41 1 5.9881 1.1531 -3.0278 42 1 5.6548 -0.5736 -4.7513 43 1 4.3345 -2.5875 -4.2373 44 1 3.3463 -2.8739 -2.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412461550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:35 Heat of formation + Delta-G solvation = -79.919755 kcal Electronic energy + Delta-G solvation = -25715.946490 eV Core-core repulsion = 22017.446757 eV Total energy + Delta-G solvation = -3698.499733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40990 -40.62326 -39.76992 -37.88737 -35.98510 -35.38471 -33.71760 -32.63391 -31.61677 -30.47419 -28.96533 -27.85781 -26.18459 -24.15763 -23.29349 -21.91169 -21.79276 -21.40068 -20.63764 -19.01059 -18.42101 -17.95977 -17.63670 -17.10489 -16.62086 -16.27413 -16.15655 -15.95430 -15.73745 -15.38648 -15.06691 -14.77591 -14.57474 -14.33216 -14.21790 -14.09576 -13.93310 -13.64729 -13.39538 -13.31425 -13.15786 -12.84706 -12.60670 -12.12984 -12.09777 -11.99936 -11.86397 -11.75942 -11.43861 -11.07058 -11.02656 -10.72279 -10.43660 -10.11694 -9.87092 -9.61073 -9.28112 -8.20587 -6.16178 0.68021 0.74373 1.32045 1.34683 1.40012 1.52029 2.02077 2.35322 2.40057 2.47373 3.09000 3.23362 3.32047 3.46880 3.77283 4.03222 4.12960 4.21286 4.31768 4.33179 4.33848 4.46617 4.53715 4.59782 4.66438 4.69288 4.76692 4.81430 4.86373 4.90055 4.96485 5.11985 5.20450 5.26539 5.41028 5.42071 5.67259 5.73822 5.77775 5.82588 5.83513 5.99023 6.03096 6.35061 6.36479 6.83323 6.85106 7.21575 7.45815 7.65244 8.96614 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.003049 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.647279 B = 9181.085135 C =10191.548198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.019 3.981 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.303 1.303 6 H -0.249 1.249 7 C -0.458 4.458 8 H 0.037 0.963 9 C 0.049 3.951 10 H 0.031 0.969 11 C -0.111 4.111 12 C 0.509 3.491 13 O -0.564 6.564 14 N -0.723 5.723 15 C 0.133 3.867 16 C -0.096 4.096 17 H 0.119 0.881 18 C 0.103 3.897 19 N -0.720 5.720 20 C 0.515 3.485 21 O -0.590 6.590 22 C -0.149 4.149 23 C -0.062 4.062 24 C -0.163 4.163 25 C -0.125 4.125 26 C -0.142 4.142 27 C -0.121 4.121 28 C -0.120 4.120 29 H 0.258 0.742 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.416 0.584 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.417 0.583 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.637 -11.066 1.158 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.177 4.177 3 Si 0.746 3.254 4 H -0.188 1.188 5 H -0.231 1.231 6 H -0.173 1.173 7 C -0.496 4.496 8 H 0.055 0.945 9 C 0.030 3.970 10 H 0.050 0.950 11 C -0.151 4.151 12 C 0.296 3.704 13 O -0.441 6.441 14 N -0.379 5.379 15 C 0.009 3.991 16 C -0.115 4.115 17 H 0.137 0.863 18 C -0.021 4.021 19 N -0.375 5.375 20 C 0.302 3.698 21 O -0.471 6.471 22 C -0.189 4.189 23 C -0.062 4.062 24 C -0.181 4.181 25 C -0.143 4.143 26 C -0.160 4.160 27 C -0.139 4.139 28 C -0.138 4.138 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.253 0.747 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.257 0.743 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.848 -10.557 1.998 19.147 hybrid contribution -0.025 0.778 0.313 0.839 sum 15.823 -9.779 2.310 18.744 Atomic orbital electron populations 1.70036 1.07942 1.27072 1.54509 1.25605 0.95059 1.02142 0.94903 0.86240 0.79490 0.80557 0.79162 1.18784 1.23091 1.17344 1.20867 0.90118 0.92419 1.46207 0.94517 1.18116 0.93794 0.95315 0.89803 0.95043 1.21557 1.01988 0.99694 0.91886 1.21018 0.79133 0.81606 0.88629 1.90755 1.38829 1.41635 1.72845 1.45791 1.56588 1.21442 1.14031 1.21215 0.99071 0.96415 0.82433 1.22276 0.94992 0.98171 0.96057 0.86264 1.22401 0.96003 0.97243 0.86461 1.46264 1.10306 1.55639 1.25247 1.21247 0.86454 0.78200 0.83904 1.90736 1.85599 1.45959 1.24794 1.22352 0.98071 1.03563 0.94924 1.20533 0.93450 0.94219 0.98036 1.21198 1.00609 0.98118 0.98169 1.21319 1.00115 0.99935 0.92967 1.21337 1.00466 0.94342 0.99880 1.21436 0.97468 0.98608 0.96407 1.21058 0.99584 0.99597 0.93548 0.93363 0.88199 0.87239 0.74683 0.91960 0.92800 0.86761 0.90142 0.74306 0.87034 0.86853 0.88038 0.84618 0.83652 0.83911 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.85 13.96 21.45 0.30 -61.55 16 2 C 0.02 1.13 5.47 84.65 0.46 1.60 16 3 Si 0.92 47.14 24.76 68.60 1.70 48.84 16 4 H -0.26 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.30 -15.87 7.11 99.48 0.71 -15.17 16 6 H -0.25 -12.04 5.94 99.48 0.59 -11.45 16 7 C -0.46 -25.33 7.18 25.60 0.18 -25.14 16 8 H 0.04 2.22 8.05 -2.91 -0.02 2.20 16 9 C 0.05 2.14 1.24 -12.29 -0.02 2.13 16 10 H 0.03 1.51 5.26 -2.39 -0.01 1.50 16 11 C -0.11 -3.61 4.84 29.85 0.14 -3.46 16 12 C 0.51 17.54 7.58 87.66 0.66 18.21 16 13 O -0.56 -26.81 14.98 -3.05 -0.05 -26.85 16 14 N -0.72 -15.47 5.50 -463.05 -2.54 -18.02 16 15 C 0.13 2.60 4.98 86.38 0.43 3.03 16 16 C -0.10 -1.09 3.16 -9.74 -0.03 -1.13 16 17 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 18 C 0.10 0.87 7.29 86.83 0.63 1.51 16 19 N -0.72 -9.08 6.24 -459.83 -2.87 -11.95 16 20 C 0.51 10.18 8.43 87.90 0.74 10.93 16 21 O -0.59 -17.52 18.03 -3.05 -0.05 -17.58 16 22 C -0.15 -2.20 6.42 30.59 0.20 -2.00 16 23 C -0.06 -2.42 4.30 -19.86 -0.09 -2.50 16 24 C -0.16 -6.01 8.16 22.27 0.18 -5.83 16 25 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 26 C -0.14 -3.83 10.05 22.27 0.22 -3.60 16 27 C -0.12 -3.45 10.05 22.27 0.22 -3.22 16 28 C -0.12 -4.13 8.94 22.27 0.20 -3.93 16 29 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 30 H 0.10 2.93 7.34 -2.39 -0.02 2.91 16 31 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.42 5.22 8.47 -92.71 -0.79 4.43 16 33 H 0.06 1.34 7.92 -2.39 -0.02 1.32 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.08 0.74 7.74 -2.39 -0.02 0.72 16 37 H 0.42 4.12 8.96 -92.71 -0.83 3.29 16 38 H 0.11 1.66 7.90 -2.39 -0.02 1.64 16 39 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.10 3.81 6.74 -2.91 -0.02 3.80 16 41 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 44 H 0.12 3.98 7.38 -2.91 -0.02 3.96 16 Total: -1.00 -86.04 360.73 0.16 -85.88 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -0.70 Total: 18.24 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 4.38 Total: -17.00 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -5.11 Total: -91.52 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.10 Total: -44.43 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.70 Total: 48.84 kcal Total: -86.04 0.16 -85.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412461550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.961 kcal (2) G-P(sol) polarization free energy of solvation -86.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds