Wall clock time and date at job start Tue Mar 31 2020 11:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00494 * 2 1 4 4 H 1.48504 * 109.47178 * 269.99715 * 3 2 1 5 5 H 1.48500 * 109.47547 * 29.99976 * 3 2 1 6 6 H 1.48503 * 109.47060 * 150.00284 * 3 2 1 7 7 C 1.37879 * 119.99357 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00350 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99954 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99846 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00294 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99813 * 180.27688 * 11 10 9 14 14 H 1.08992 * 109.47099 * 61.77884 * 13 11 10 15 15 C 1.50707 * 109.46678 * 301.78262 * 13 11 10 16 16 C 1.38232 * 120.00059 * 284.69477 * 15 13 11 17 17 C 1.38230 * 119.99853 * 179.79422 * 16 15 13 18 18 C 1.38232 * 120.00147 * 0.43690 * 17 16 15 19 19 C 1.38235 * 119.99893 * 359.81535 * 18 17 16 20 20 C 1.38232 * 119.99881 * 104.97418 * 15 13 11 21 21 N 1.46497 * 109.47283 * 181.78578 * 13 11 10 22 22 C 1.45752 * 117.94625 * 35.02039 * 21 13 11 23 23 C 1.53102 * 110.38477 * 160.74745 * 22 21 13 24 24 C 1.53340 * 108.53032 * 51.11816 * 23 22 21 25 25 C 1.53074 * 108.42527 * 292.30895 * 24 23 22 26 26 C 1.33354 * 117.94839 * 215.28599 * 21 13 11 27 27 O 1.21287 * 118.24137 * 2.19813 * 26 21 13 28 28 H 0.97007 * 119.99058 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47192 * 60.00434 * 9 7 2 30 30 H 1.08999 * 109.47466 * 299.99768 * 9 7 2 31 31 H 0.97002 * 119.99873 * 359.97438 * 10 9 7 32 32 H 1.08006 * 119.99979 * 0.02562 * 16 15 13 33 33 H 1.08007 * 120.00006 * 180.27719 * 17 16 15 34 34 H 1.07996 * 119.99982 * 179.84042 * 18 17 16 35 35 H 1.08001 * 119.99966 * 179.97438 * 19 18 17 36 36 H 1.08006 * 120.00336 * 359.97361 * 20 15 13 37 37 H 1.09005 * 109.30482 * 281.23922 * 22 21 13 38 38 H 1.09001 * 109.30253 * 40.61713 * 22 21 13 39 39 H 1.08997 * 109.80807 * 291.32245 * 23 22 21 40 40 H 1.09006 * 109.54119 * 170.74823 * 23 22 21 41 41 H 1.09002 * 109.67544 * 172.57711 * 24 23 22 42 42 H 1.09004 * 109.67662 * 52.03810 * 24 23 22 43 43 H 1.09003 * 109.39811 * 288.77587 * 25 24 23 44 44 H 1.08996 * 109.33513 * 168.98395 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5469 1.4399 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0000 10 7 3.9996 -2.5756 0.0001 11 6 5.3246 -2.8220 0.0001 12 8 6.1129 -1.9002 -0.0004 13 6 5.8269 -4.2429 -0.0061 14 1 5.4906 -4.7431 -0.9141 15 6 5.2875 -4.9715 1.1979 16 6 5.8219 -4.7287 2.4494 17 6 5.3243 -5.3938 3.5543 18 6 4.2984 -6.3084 3.4064 19 6 3.7676 -6.5551 2.1541 20 6 4.2623 -5.8868 1.0499 21 7 7.2912 -4.2435 0.0383 22 6 7.9515 -3.2006 0.8134 23 6 9.3887 -3.6113 1.1444 24 6 10.0826 -4.0452 -0.1524 25 6 9.4311 -5.3421 -0.6391 26 6 7.9365 -5.1950 -0.6373 27 8 7.2813 -5.9840 -1.2848 28 1 -0.4849 0.8402 -0.0004 29 1 3.8751 -0.6800 0.8895 30 1 3.8745 -0.6812 -0.8905 31 1 3.3692 -3.3128 0.0009 32 1 6.6257 -4.0165 2.5645 33 1 5.7388 -5.2008 4.5328 34 1 3.9114 -6.8299 4.2693 35 1 2.9663 -7.2699 2.0385 36 1 3.8475 -6.0796 0.0715 37 1 7.9611 -2.2751 0.2375 38 1 7.4022 -3.0385 1.7408 39 1 9.3823 -4.4411 1.8511 40 1 9.9198 -2.7634 1.5772 41 1 11.1422 -4.2158 0.0377 42 1 9.9651 -3.2692 -0.9088 43 1 9.7150 -6.1604 0.0226 44 1 9.7723 -5.5596 -1.6511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427617788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:35 Heat of formation + Delta-G solvation = -35.609150 kcal Electronic energy + Delta-G solvation = -27176.463379 eV Core-core repulsion = 23479.885097 eV Total energy + Delta-G solvation = -3696.578281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.16633 -39.16771 -38.51099 -36.43184 -34.63199 -34.28823 -32.48325 -31.29864 -30.84385 -29.69592 -28.44485 -26.69556 -24.57045 -22.85084 -22.41862 -22.27698 -21.36082 -20.00611 -18.73306 -17.69533 -17.09201 -16.76517 -16.42326 -15.82837 -15.59203 -15.13492 -15.08727 -14.67020 -14.47268 -14.40158 -14.20841 -13.86429 -13.51899 -13.40321 -13.02406 -12.84642 -12.77716 -12.55744 -12.39027 -12.02895 -11.65812 -11.53448 -11.26215 -11.17651 -11.07865 -10.93857 -10.87428 -10.77053 -10.01921 -9.75627 -9.64196 -9.52330 -8.88949 -8.82211 -8.67486 -8.42191 -8.23837 -6.24054 -4.26639 1.29716 1.43794 2.62341 2.82495 3.03620 3.23661 3.30494 3.37141 3.68879 4.05450 4.29971 4.47780 4.58765 4.63286 4.67438 4.71152 4.89086 4.99677 5.06598 5.10987 5.21576 5.27972 5.30491 5.39898 5.52445 5.53174 5.57221 5.63581 5.69760 5.80647 5.88644 5.95572 6.04499 6.17306 6.35846 6.47283 6.53022 6.57636 6.71973 6.99254 7.00087 7.12256 7.32378 7.47900 8.02639 8.15411 8.42633 8.67128 8.79821 9.35070 10.87913 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.004553 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.469549 B = 6148.216099 C = 7398.197486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.222 3.778 10 N -0.692 5.692 11 C 0.503 3.497 12 O -0.549 6.549 13 C 0.156 3.844 14 H 0.127 0.873 15 C -0.091 4.091 16 C -0.109 4.109 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.099 4.099 21 N -0.575 5.575 22 C 0.102 3.898 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.129 4.129 26 C 0.517 3.483 27 O -0.558 6.558 28 H 0.268 0.732 29 H 0.027 0.973 30 H 0.022 0.978 31 H 0.398 0.602 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.319 -11.678 5.236 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.100 3.900 10 N -0.339 5.339 11 C 0.287 3.713 12 O -0.429 6.429 13 C 0.048 3.952 14 H 0.145 0.855 15 C -0.092 4.092 16 C -0.127 4.127 17 C -0.138 4.138 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.118 4.118 21 N -0.307 5.307 22 C -0.019 4.019 23 C -0.178 4.178 24 C -0.161 4.161 25 C -0.169 4.169 26 C 0.306 3.694 27 O -0.438 6.438 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.232 0.768 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.376 -11.261 4.893 21.277 hybrid contribution -0.102 0.582 0.089 0.598 sum 17.274 -10.679 4.983 20.911 Atomic orbital electron populations 1.69884 1.06203 1.27425 1.49257 1.24782 0.94780 0.99097 0.93852 0.86826 0.80532 0.83316 0.79043 1.19837 1.20865 1.18567 1.21065 0.88378 0.95301 1.53452 0.90183 1.19539 0.95441 0.78158 0.96862 1.46144 1.05276 1.11419 1.71093 1.20307 0.83720 0.89699 0.77566 1.90590 1.54576 1.45954 1.51771 1.19855 0.81792 0.94525 0.99019 0.85496 1.19813 0.97465 0.97935 0.94023 1.21255 0.99899 0.99512 0.92030 1.21095 0.97343 0.97027 0.98373 1.21165 0.96733 0.98205 0.97395 1.21114 0.99852 0.99876 0.92563 1.21054 0.95925 0.95414 0.99391 1.46974 1.04804 1.29293 1.49592 1.22054 0.91590 0.91663 0.96606 1.22039 0.95773 1.02245 0.97752 1.21661 0.99782 0.96840 0.97849 1.21612 0.90878 0.99910 1.04469 1.20159 0.90837 0.80135 0.78254 1.90700 1.67560 1.42471 1.43020 0.92229 0.95537 0.95979 0.76762 0.85598 0.86113 0.86138 0.85773 0.85553 0.87759 0.90570 0.91429 0.89799 0.90750 0.90865 0.88444 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.54 -14.79 9.83 -34.44 -0.34 -15.13 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.35 4.50 -5.19 -0.02 5.33 16 10 N -0.69 -14.01 5.44 -61.47 -0.33 -14.34 16 11 C 0.50 9.43 6.85 -10.98 -0.08 9.36 16 12 O -0.55 -11.29 12.89 5.55 0.07 -11.22 16 13 C 0.16 2.46 2.45 -70.23 -0.17 2.29 16 14 H 0.13 2.08 6.78 -51.93 -0.35 1.73 16 15 C -0.09 -1.32 4.66 -104.62 -0.49 -1.81 16 16 C -0.11 -1.48 9.19 -39.59 -0.36 -1.85 16 17 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 18 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 19 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 20 C -0.10 -1.35 9.67 -39.59 -0.38 -1.73 16 21 N -0.58 -8.20 2.50 -169.91 -0.43 -8.63 16 22 C 0.10 1.29 4.19 -4.39 -0.02 1.27 16 23 C -0.14 -1.23 6.03 -26.50 -0.16 -1.39 16 24 C -0.12 -1.01 6.03 -26.52 -0.16 -1.17 16 25 C -0.13 -1.26 6.03 -28.10 -0.17 -1.43 16 26 C 0.52 7.34 7.47 -11.87 -0.09 7.25 16 27 O -0.56 -9.79 16.10 5.55 0.09 -9.70 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 30 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 31 H 0.40 7.45 8.14 -40.82 -0.33 7.11 16 32 H 0.13 1.62 4.63 -52.48 -0.24 1.37 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.56 8.00 -52.48 -0.42 1.14 16 37 H 0.10 1.54 6.08 -51.93 -0.32 1.23 16 38 H 0.08 0.99 4.94 -51.93 -0.26 0.74 16 39 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -32.79 354.11 -8.96 -41.75 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.07 Total: 8.13 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.73 Total: -2.30 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.01 Total: -48.46 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.16 Total: -20.92 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.79 -8.96 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427617788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.139 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds