Wall clock time and date at job start Tue Mar 31 2020 11:23:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86791 * 120.00494 * 2 1
4 4 H 1.48504 * 109.47178 * 269.99715 * 3 2 1
5 5 H 1.48500 * 109.47547 * 29.99976 * 3 2 1
6 6 H 1.48503 * 109.47060 * 150.00284 * 3 2 1
7 7 C 1.37879 * 119.99357 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00350 * 0.02562 * 7 2 1
9 9 C 1.50695 * 119.99954 * 179.97438 * 7 2 1
10 10 N 1.46505 * 109.47223 * 180.02562 * 9 7 2
11 11 C 1.34774 * 119.99846 * 180.02562 * 10 9 7
12 12 O 1.21283 * 120.00294 * 359.97438 * 11 10 9
13 13 C 1.50707 * 119.99813 * 180.27688 * 11 10 9
14 14 H 1.08992 * 109.47099 * 61.77884 * 13 11 10
15 15 C 1.50707 * 109.46678 * 301.78262 * 13 11 10
16 16 C 1.38232 * 120.00059 * 284.69477 * 15 13 11
17 17 C 1.38230 * 119.99853 * 179.79422 * 16 15 13
18 18 C 1.38232 * 120.00147 * 0.43690 * 17 16 15
19 19 C 1.38235 * 119.99893 * 359.81535 * 18 17 16
20 20 C 1.38232 * 119.99881 * 104.97418 * 15 13 11
21 21 N 1.46497 * 109.47283 * 181.78578 * 13 11 10
22 22 C 1.45752 * 117.94625 * 35.02039 * 21 13 11
23 23 C 1.53102 * 110.38477 * 160.74745 * 22 21 13
24 24 C 1.53340 * 108.53032 * 51.11816 * 23 22 21
25 25 C 1.53074 * 108.42527 * 292.30895 * 24 23 22
26 26 C 1.33354 * 117.94839 * 215.28599 * 21 13 11
27 27 O 1.21287 * 118.24137 * 2.19813 * 26 21 13
28 28 H 0.97007 * 119.99058 * 0.02562 * 1 2 3
29 29 H 1.09004 * 109.47192 * 60.00434 * 9 7 2
30 30 H 1.08999 * 109.47466 * 299.99768 * 9 7 2
31 31 H 0.97002 * 119.99873 * 359.97438 * 10 9 7
32 32 H 1.08006 * 119.99979 * 0.02562 * 16 15 13
33 33 H 1.08007 * 120.00006 * 180.27719 * 17 16 15
34 34 H 1.07996 * 119.99982 * 179.84042 * 18 17 16
35 35 H 1.08001 * 119.99966 * 179.97438 * 19 18 17
36 36 H 1.08006 * 120.00336 * 359.97361 * 20 15 13
37 37 H 1.09005 * 109.30482 * 281.23922 * 22 21 13
38 38 H 1.09001 * 109.30253 * 40.61713 * 22 21 13
39 39 H 1.08997 * 109.80807 * 291.32245 * 23 22 21
40 40 H 1.09006 * 109.54119 * 170.74823 * 23 22 21
41 41 H 1.09002 * 109.67544 * 172.57711 * 24 23 22
42 42 H 1.09004 * 109.67662 * 52.03810 * 24 23 22
43 43 H 1.09003 * 109.39811 * 288.77587 * 25 24 23
44 44 H 1.08996 * 109.33513 * 168.98395 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 2.4969 2.0462 -1.4001
5 1 1.4469 2.6527 0.7000
6 1 3.5469 1.4399 0.7000
7 6 2.0044 -1.1941 0.0005
8 1 1.4644 -2.1294 0.0005
9 6 3.5114 -1.1943 0.0000
10 7 3.9996 -2.5756 0.0001
11 6 5.3246 -2.8220 0.0001
12 8 6.1129 -1.9002 -0.0004
13 6 5.8269 -4.2429 -0.0061
14 1 5.4906 -4.7431 -0.9141
15 6 5.2875 -4.9715 1.1979
16 6 5.8219 -4.7287 2.4494
17 6 5.3243 -5.3938 3.5543
18 6 4.2984 -6.3084 3.4064
19 6 3.7676 -6.5551 2.1541
20 6 4.2623 -5.8868 1.0499
21 7 7.2912 -4.2435 0.0383
22 6 7.9515 -3.2006 0.8134
23 6 9.3887 -3.6113 1.1444
24 6 10.0826 -4.0452 -0.1524
25 6 9.4311 -5.3421 -0.6391
26 6 7.9365 -5.1950 -0.6373
27 8 7.2813 -5.9840 -1.2848
28 1 -0.4849 0.8402 -0.0004
29 1 3.8751 -0.6800 0.8895
30 1 3.8745 -0.6812 -0.8905
31 1 3.3692 -3.3128 0.0009
32 1 6.6257 -4.0165 2.5645
33 1 5.7388 -5.2008 4.5328
34 1 3.9114 -6.8299 4.2693
35 1 2.9663 -7.2699 2.0385
36 1 3.8475 -6.0796 0.0715
37 1 7.9611 -2.2751 0.2375
38 1 7.4022 -3.0385 1.7408
39 1 9.3823 -4.4411 1.8511
40 1 9.9198 -2.7634 1.5772
41 1 11.1422 -4.2158 0.0377
42 1 9.9651 -3.2692 -0.9088
43 1 9.7150 -6.1604 0.0226
44 1 9.7723 -5.5596 -1.6511
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000427617788.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:23:35
Heat of formation + Delta-G solvation = -35.609150 kcal
Electronic energy + Delta-G solvation = -27176.463379 eV
Core-core repulsion = 23479.885097 eV
Total energy + Delta-G solvation = -3696.578281 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.16633 -39.16771 -38.51099 -36.43184 -34.63199 -34.28823 -32.48325 -31.29864
-30.84385 -29.69592 -28.44485 -26.69556 -24.57045 -22.85084 -22.41862 -22.27698
-21.36082 -20.00611 -18.73306 -17.69533 -17.09201 -16.76517 -16.42326 -15.82837
-15.59203 -15.13492 -15.08727 -14.67020 -14.47268 -14.40158 -14.20841 -13.86429
-13.51899 -13.40321 -13.02406 -12.84642 -12.77716 -12.55744 -12.39027 -12.02895
-11.65812 -11.53448 -11.26215 -11.17651 -11.07865 -10.93857 -10.87428 -10.77053
-10.01921 -9.75627 -9.64196 -9.52330 -8.88949 -8.82211 -8.67486 -8.42191
-8.23837 -6.24054 -4.26639 1.29716 1.43794 2.62341 2.82495 3.03620
3.23661 3.30494 3.37141 3.68879 4.05450 4.29971 4.47780 4.58765
4.63286 4.67438 4.71152 4.89086 4.99677 5.06598 5.10987 5.21576
5.27972 5.30491 5.39898 5.52445 5.53174 5.57221 5.63581 5.69760
5.80647 5.88644 5.95572 6.04499 6.17306 6.35846 6.47283 6.53022
6.57636 6.71973 6.99254 7.00087 7.12256 7.32378 7.47900 8.02639
8.15411 8.42633 8.67128 8.79821 9.35070 10.87913
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.012539 B = 0.004553 C = 0.003784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2232.469549 B = 6148.216099 C = 7398.197486
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.079 3.921
3 Si 0.877 3.123
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.261 1.261
7 C -0.544 4.544
8 H 0.080 0.920
9 C 0.222 3.778
10 N -0.692 5.692
11 C 0.503 3.497
12 O -0.549 6.549
13 C 0.156 3.844
14 H 0.127 0.873
15 C -0.091 4.091
16 C -0.109 4.109
17 C -0.120 4.120
18 C -0.117 4.117
19 C -0.116 4.116
20 C -0.099 4.099
21 N -0.575 5.575
22 C 0.102 3.898
23 C -0.140 4.140
24 C -0.124 4.124
25 C -0.129 4.129
26 C 0.517 3.483
27 O -0.558 6.558
28 H 0.268 0.732
29 H 0.027 0.973
30 H 0.022 0.978
31 H 0.398 0.602
32 H 0.126 0.874
33 H 0.121 0.879
34 H 0.121 0.879
35 H 0.124 0.876
36 H 0.127 0.873
37 H 0.105 0.895
38 H 0.076 0.924
39 H 0.067 0.933
40 H 0.083 0.917
41 H 0.074 0.926
42 H 0.073 0.927
43 H 0.097 0.903
44 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.319 -11.678 5.236 21.534
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.125 4.125
3 Si 0.703 3.297
4 H -0.198 1.198
5 H -0.209 1.209
6 H -0.186 1.186
7 C -0.582 4.582
8 H 0.098 0.902
9 C 0.100 3.900
10 N -0.339 5.339
11 C 0.287 3.713
12 O -0.429 6.429
13 C 0.048 3.952
14 H 0.145 0.855
15 C -0.092 4.092
16 C -0.127 4.127
17 C -0.138 4.138
18 C -0.135 4.135
19 C -0.134 4.134
20 C -0.118 4.118
21 N -0.307 5.307
22 C -0.019 4.019
23 C -0.178 4.178
24 C -0.161 4.161
25 C -0.169 4.169
26 C 0.306 3.694
27 O -0.438 6.438
28 H 0.078 0.922
29 H 0.045 0.955
30 H 0.040 0.960
31 H 0.232 0.768
32 H 0.144 0.856
33 H 0.139 0.861
34 H 0.139 0.861
35 H 0.142 0.858
36 H 0.144 0.856
37 H 0.122 0.878
38 H 0.094 0.906
39 H 0.086 0.914
40 H 0.102 0.898
41 H 0.093 0.907
42 H 0.091 0.909
43 H 0.116 0.884
44 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 17.376 -11.261 4.893 21.277
hybrid contribution -0.102 0.582 0.089 0.598
sum 17.274 -10.679 4.983 20.911
Atomic orbital electron populations
1.69884 1.06203 1.27425 1.49257 1.24782 0.94780 0.99097 0.93852
0.86826 0.80532 0.83316 0.79043 1.19837 1.20865 1.18567 1.21065
0.88378 0.95301 1.53452 0.90183 1.19539 0.95441 0.78158 0.96862
1.46144 1.05276 1.11419 1.71093 1.20307 0.83720 0.89699 0.77566
1.90590 1.54576 1.45954 1.51771 1.19855 0.81792 0.94525 0.99019
0.85496 1.19813 0.97465 0.97935 0.94023 1.21255 0.99899 0.99512
0.92030 1.21095 0.97343 0.97027 0.98373 1.21165 0.96733 0.98205
0.97395 1.21114 0.99852 0.99876 0.92563 1.21054 0.95925 0.95414
0.99391 1.46974 1.04804 1.29293 1.49592 1.22054 0.91590 0.91663
0.96606 1.22039 0.95773 1.02245 0.97752 1.21661 0.99782 0.96840
0.97849 1.21612 0.90878 0.99910 1.04469 1.20159 0.90837 0.80135
0.78254 1.90700 1.67560 1.42471 1.43020 0.92229 0.95537 0.95979
0.76762 0.85598 0.86113 0.86138 0.85773 0.85553 0.87759 0.90570
0.91429 0.89799 0.90750 0.90865 0.88444 0.88283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16
2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16
3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16
4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16
7 C -0.54 -14.79 9.83 -34.44 -0.34 -15.13 16
8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16
9 C 0.22 5.35 4.50 -5.19 -0.02 5.33 16
10 N -0.69 -14.01 5.44 -61.47 -0.33 -14.34 16
11 C 0.50 9.43 6.85 -10.98 -0.08 9.36 16
12 O -0.55 -11.29 12.89 5.55 0.07 -11.22 16
13 C 0.16 2.46 2.45 -70.23 -0.17 2.29 16
14 H 0.13 2.08 6.78 -51.93 -0.35 1.73 16
15 C -0.09 -1.32 4.66 -104.62 -0.49 -1.81 16
16 C -0.11 -1.48 9.19 -39.59 -0.36 -1.85 16
17 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16
18 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16
19 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16
20 C -0.10 -1.35 9.67 -39.59 -0.38 -1.73 16
21 N -0.58 -8.20 2.50 -169.91 -0.43 -8.63 16
22 C 0.10 1.29 4.19 -4.39 -0.02 1.27 16
23 C -0.14 -1.23 6.03 -26.50 -0.16 -1.39 16
24 C -0.12 -1.01 6.03 -26.52 -0.16 -1.17 16
25 C -0.13 -1.26 6.03 -28.10 -0.17 -1.43 16
26 C 0.52 7.34 7.47 -11.87 -0.09 7.25 16
27 O -0.56 -9.79 16.10 5.55 0.09 -9.70 16
28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
29 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16
30 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16
31 H 0.40 7.45 8.14 -40.82 -0.33 7.11 16
32 H 0.13 1.62 4.63 -52.48 -0.24 1.37 16
33 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16
34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16
35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16
36 H 0.13 1.56 8.00 -52.48 -0.42 1.14 16
37 H 0.10 1.54 6.08 -51.93 -0.32 1.23 16
38 H 0.08 0.99 4.94 -51.93 -0.26 0.74 16
39 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16
40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16
41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
42 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16
43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16
44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16
LS Contribution 354.11 15.07 5.34 5.34
Total: -1.00 -32.79 354.11 -8.96 -41.75
By element:
Atomic # 1 Polarization: 14.20 SS G_CDS: -6.07 Total: 8.13 kcal
Atomic # 6 Polarization: 1.43 SS G_CDS: -3.73 Total: -2.30 kcal
Atomic # 7 Polarization: -48.48 SS G_CDS: 0.01 Total: -48.46 kcal
Atomic # 8 Polarization: -21.08 SS G_CDS: 0.16 Total: -20.92 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -32.79 -8.96 -41.75 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427617788.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.139 kcal
(2) G-P(sol) polarization free energy of solvation -32.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.609 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds