Wall clock time and date at job start Tue Mar 31 2020 11:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00494 * 2 1 4 4 H 1.48504 * 109.47178 * 269.99715 * 3 2 1 5 5 H 1.48500 * 109.47547 * 29.99976 * 3 2 1 6 6 H 1.48503 * 109.47060 * 150.00284 * 3 2 1 7 7 C 1.37879 * 119.99357 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00350 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99954 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99846 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00294 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99813 * 180.27688 * 11 10 9 14 14 H 1.08992 * 109.47099 * 61.77884 * 13 11 10 15 15 C 1.50707 * 109.46678 * 301.78262 * 13 11 10 16 16 C 1.38232 * 120.00059 * 284.69477 * 15 13 11 17 17 C 1.38230 * 119.99853 * 179.79422 * 16 15 13 18 18 C 1.38232 * 120.00147 * 0.43690 * 17 16 15 19 19 C 1.38235 * 119.99893 * 359.81535 * 18 17 16 20 20 C 1.38232 * 119.99881 * 104.97418 * 15 13 11 21 21 N 1.46497 * 109.47283 * 181.78578 * 13 11 10 22 22 C 1.45752 * 117.94625 * 35.02039 * 21 13 11 23 23 C 1.53102 * 110.38477 * 160.74745 * 22 21 13 24 24 C 1.53340 * 108.53032 * 51.11816 * 23 22 21 25 25 C 1.53074 * 108.42527 * 292.30895 * 24 23 22 26 26 C 1.33354 * 117.94839 * 215.28599 * 21 13 11 27 27 O 1.21287 * 118.24137 * 2.19813 * 26 21 13 28 28 H 0.97007 * 119.99058 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47192 * 60.00434 * 9 7 2 30 30 H 1.08999 * 109.47466 * 299.99768 * 9 7 2 31 31 H 0.97002 * 119.99873 * 359.97438 * 10 9 7 32 32 H 1.08006 * 119.99979 * 0.02562 * 16 15 13 33 33 H 1.08007 * 120.00006 * 180.27719 * 17 16 15 34 34 H 1.07996 * 119.99982 * 179.84042 * 18 17 16 35 35 H 1.08001 * 119.99966 * 179.97438 * 19 18 17 36 36 H 1.08006 * 120.00336 * 359.97361 * 20 15 13 37 37 H 1.09005 * 109.30482 * 281.23922 * 22 21 13 38 38 H 1.09001 * 109.30253 * 40.61713 * 22 21 13 39 39 H 1.08997 * 109.80807 * 291.32245 * 23 22 21 40 40 H 1.09006 * 109.54119 * 170.74823 * 23 22 21 41 41 H 1.09002 * 109.67544 * 172.57711 * 24 23 22 42 42 H 1.09004 * 109.67662 * 52.03810 * 24 23 22 43 43 H 1.09003 * 109.39811 * 288.77587 * 25 24 23 44 44 H 1.08996 * 109.33513 * 168.98395 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5469 1.4399 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0000 10 7 3.9996 -2.5756 0.0001 11 6 5.3246 -2.8220 0.0001 12 8 6.1129 -1.9002 -0.0004 13 6 5.8269 -4.2429 -0.0061 14 1 5.4906 -4.7431 -0.9141 15 6 5.2875 -4.9715 1.1979 16 6 5.8219 -4.7287 2.4494 17 6 5.3243 -5.3938 3.5543 18 6 4.2984 -6.3084 3.4064 19 6 3.7676 -6.5551 2.1541 20 6 4.2623 -5.8868 1.0499 21 7 7.2912 -4.2435 0.0383 22 6 7.9515 -3.2006 0.8134 23 6 9.3887 -3.6113 1.1444 24 6 10.0826 -4.0452 -0.1524 25 6 9.4311 -5.3421 -0.6391 26 6 7.9365 -5.1950 -0.6373 27 8 7.2813 -5.9840 -1.2848 28 1 -0.4849 0.8402 -0.0004 29 1 3.8751 -0.6800 0.8895 30 1 3.8745 -0.6812 -0.8905 31 1 3.3692 -3.3128 0.0009 32 1 6.6257 -4.0165 2.5645 33 1 5.7388 -5.2008 4.5328 34 1 3.9114 -6.8299 4.2693 35 1 2.9663 -7.2699 2.0385 36 1 3.8475 -6.0796 0.0715 37 1 7.9611 -2.2751 0.2375 38 1 7.4022 -3.0385 1.7408 39 1 9.3823 -4.4411 1.8511 40 1 9.9198 -2.7634 1.5772 41 1 11.1422 -4.2158 0.0377 42 1 9.9651 -3.2692 -0.9088 43 1 9.7150 -6.1604 0.0226 44 1 9.7723 -5.5596 -1.6511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427617788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:35 Heat of formation + Delta-G solvation = -56.646948 kcal Electronic energy + Delta-G solvation = -27177.375646 eV Core-core repulsion = 23479.885097 eV Total energy + Delta-G solvation = -3697.490549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.34816 -40.40061 -39.73546 -37.51626 -36.25727 -35.47053 -34.48068 -32.37677 -31.82649 -30.62927 -30.18758 -28.04584 -25.54603 -24.27935 -23.70342 -23.23222 -22.63384 -21.48250 -19.78235 -19.27065 -18.36435 -17.98577 -17.85098 -17.03840 -16.92580 -16.54007 -16.30096 -16.08370 -15.75885 -15.55558 -15.26915 -15.07825 -14.72849 -14.56128 -14.39315 -14.22057 -14.00199 -13.87055 -13.59969 -13.47880 -13.09695 -12.72441 -12.60350 -12.41329 -12.12219 -11.96494 -11.94044 -11.82658 -11.76360 -11.69773 -11.12565 -10.93790 -10.70844 -10.05517 -9.87569 -9.70782 -9.63396 -8.41131 -6.49005 0.28401 0.45556 1.32071 1.33862 1.43349 1.46399 1.52978 1.74788 2.26614 2.38159 2.90243 2.94075 3.50530 3.53203 3.70263 3.84125 3.90489 3.93492 3.94883 4.07156 4.19016 4.25807 4.48195 4.56825 4.57739 4.63157 4.71380 4.74327 4.86546 4.94116 4.97821 4.98811 5.06482 5.08343 5.13898 5.21845 5.27040 5.36026 5.47153 5.51109 5.55741 5.57413 6.03760 6.04322 6.41438 6.49682 6.66588 7.03673 7.08782 7.22843 8.73810 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.004553 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.469549 B = 6148.216099 C = 7398.197486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.549 4.549 8 H 0.055 0.945 9 C 0.236 3.764 10 N -0.695 5.695 11 C 0.506 3.494 12 O -0.566 6.566 13 C 0.165 3.835 14 H 0.115 0.885 15 C -0.109 4.109 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.122 4.122 20 C -0.117 4.117 21 N -0.575 5.575 22 C 0.101 3.899 23 C -0.132 4.132 24 C -0.118 4.118 25 C -0.123 4.123 26 C 0.508 3.492 27 O -0.600 6.600 28 H 0.273 0.727 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.404 0.596 32 H 0.130 0.870 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.119 0.881 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.670 -12.044 6.741 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.587 4.587 8 H 0.073 0.927 9 C 0.112 3.888 10 N -0.344 5.344 11 C 0.292 3.708 12 O -0.447 6.447 13 C 0.057 3.943 14 H 0.133 0.867 15 C -0.110 4.110 16 C -0.140 4.140 17 C -0.141 4.141 18 C -0.134 4.134 19 C -0.140 4.140 20 C -0.136 4.136 21 N -0.306 5.306 22 C -0.020 4.020 23 C -0.169 4.169 24 C -0.155 4.155 25 C -0.162 4.162 26 C 0.299 3.701 27 O -0.482 6.482 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.239 0.761 32 H 0.147 0.853 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.145 0.855 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.137 0.863 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 19.755 -11.638 6.407 23.806 hybrid contribution -0.881 0.615 -0.364 1.134 sum 18.874 -11.024 6.043 22.677 Atomic orbital electron populations 1.69993 1.07789 1.28661 1.50492 1.25608 0.95543 1.02708 0.93424 0.85834 0.79374 0.79088 0.79459 1.19065 1.19780 1.18030 1.21248 0.89920 0.94524 1.52981 0.92707 1.19149 0.93427 0.80161 0.96016 1.45999 1.06253 1.10154 1.71979 1.20822 0.82786 0.91006 0.76232 1.90594 1.54819 1.47078 1.52180 1.19602 0.83262 0.91985 0.99464 0.86708 1.19770 0.98502 0.98886 0.93849 1.21416 1.00343 1.00104 0.92169 1.21449 0.97197 0.96442 0.98984 1.21573 0.96070 0.97701 0.98071 1.21442 1.00222 0.99873 0.92429 1.21238 0.96126 0.95941 1.00276 1.47140 1.04046 1.29701 1.49706 1.22064 0.94088 0.90380 0.95466 1.22032 0.92904 1.03486 0.98497 1.21667 1.01374 0.95471 0.97001 1.21691 0.87188 1.01611 1.05717 1.21104 0.92728 0.79175 0.77097 1.90677 1.68842 1.43961 1.44689 0.91809 0.96278 0.96697 0.76057 0.85283 0.83500 0.83199 0.83657 0.85491 0.90285 0.91255 0.90157 0.87824 0.87403 0.91856 0.86342 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16 2 C 0.03 1.56 5.47 84.65 0.46 2.02 16 3 Si 0.94 43.59 27.47 68.60 1.88 45.47 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.26 -11.60 6.54 99.48 0.65 -10.95 16 7 C -0.55 -30.54 9.83 25.60 0.25 -30.29 16 8 H 0.05 3.25 7.84 -2.91 -0.02 3.23 16 9 C 0.24 11.55 4.50 85.63 0.38 11.93 16 10 N -0.70 -29.00 5.44 -466.77 -2.54 -31.54 16 11 C 0.51 19.48 6.85 87.66 0.60 20.08 16 12 O -0.57 -23.72 12.89 -3.04 -0.04 -23.76 16 13 C 0.16 5.37 2.45 43.50 0.11 5.47 16 14 H 0.12 3.99 6.78 -2.39 -0.02 3.97 16 15 C -0.11 -3.20 4.66 -19.86 -0.09 -3.29 16 16 C -0.12 -3.24 9.19 22.27 0.20 -3.03 16 17 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 18 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 19 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 20 C -0.12 -3.22 9.67 22.27 0.22 -3.00 16 21 N -0.58 -16.45 2.50 -810.64 -2.03 -18.48 16 22 C 0.10 2.50 4.19 86.55 0.36 2.86 16 23 C -0.13 -1.98 6.03 30.74 0.19 -1.79 16 24 C -0.12 -1.57 6.03 30.73 0.19 -1.39 16 25 C -0.12 -2.12 6.03 29.71 0.18 -1.95 16 26 C 0.51 14.24 7.47 87.71 0.66 14.90 16 27 O -0.60 -21.40 16.10 -3.05 -0.05 -21.45 16 28 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 29 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 30 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 31 H 0.40 15.80 8.14 -92.71 -0.76 15.04 16 32 H 0.13 3.23 4.63 -2.91 -0.01 3.22 16 33 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.13 3.30 8.00 -2.91 -0.02 3.28 16 37 H 0.08 2.36 6.08 -2.38 -0.01 2.35 16 38 H 0.07 1.79 4.94 -2.39 -0.01 1.78 16 39 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 40 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 1.00 8.12 -2.38 -0.02 0.98 16 43 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.32 354.11 2.12 -70.20 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.21 Total: 29.72 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 4.37 Total: 5.26 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -4.27 Total: -105.44 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -0.09 Total: -45.21 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -72.32 2.12 -70.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427617788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.558 kcal (2) G-P(sol) polarization free energy of solvation -72.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds