Wall clock time and date at job start Tue Mar 31 2020 11:23:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86791 * 120.00494 * 2 1
4 4 H 1.48504 * 109.47178 * 269.99715 * 3 2 1
5 5 H 1.48500 * 109.47547 * 29.99976 * 3 2 1
6 6 H 1.48503 * 109.47060 * 150.00284 * 3 2 1
7 7 C 1.37879 * 119.99357 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00350 * 0.02562 * 7 2 1
9 9 C 1.50695 * 119.99954 * 179.97438 * 7 2 1
10 10 N 1.46505 * 109.47223 * 180.02562 * 9 7 2
11 11 C 1.34774 * 119.99846 * 180.02562 * 10 9 7
12 12 O 1.21283 * 120.00294 * 359.97438 * 11 10 9
13 13 C 1.50707 * 119.99813 * 180.27688 * 11 10 9
14 14 H 1.08992 * 109.47099 * 61.77884 * 13 11 10
15 15 C 1.50707 * 109.46678 * 301.78262 * 13 11 10
16 16 C 1.38232 * 120.00059 * 284.69477 * 15 13 11
17 17 C 1.38230 * 119.99853 * 179.79422 * 16 15 13
18 18 C 1.38232 * 120.00147 * 0.43690 * 17 16 15
19 19 C 1.38235 * 119.99893 * 359.81535 * 18 17 16
20 20 C 1.38232 * 119.99881 * 104.97418 * 15 13 11
21 21 N 1.46497 * 109.47283 * 181.78578 * 13 11 10
22 22 C 1.45752 * 117.94625 * 35.02039 * 21 13 11
23 23 C 1.53102 * 110.38477 * 160.74745 * 22 21 13
24 24 C 1.53340 * 108.53032 * 51.11816 * 23 22 21
25 25 C 1.53074 * 108.42527 * 292.30895 * 24 23 22
26 26 C 1.33354 * 117.94839 * 215.28599 * 21 13 11
27 27 O 1.21287 * 118.24137 * 2.19813 * 26 21 13
28 28 H 0.97007 * 119.99058 * 0.02562 * 1 2 3
29 29 H 1.09004 * 109.47192 * 60.00434 * 9 7 2
30 30 H 1.08999 * 109.47466 * 299.99768 * 9 7 2
31 31 H 0.97002 * 119.99873 * 359.97438 * 10 9 7
32 32 H 1.08006 * 119.99979 * 0.02562 * 16 15 13
33 33 H 1.08007 * 120.00006 * 180.27719 * 17 16 15
34 34 H 1.07996 * 119.99982 * 179.84042 * 18 17 16
35 35 H 1.08001 * 119.99966 * 179.97438 * 19 18 17
36 36 H 1.08006 * 120.00336 * 359.97361 * 20 15 13
37 37 H 1.09005 * 109.30482 * 281.23922 * 22 21 13
38 38 H 1.09001 * 109.30253 * 40.61713 * 22 21 13
39 39 H 1.08997 * 109.80807 * 291.32245 * 23 22 21
40 40 H 1.09006 * 109.54119 * 170.74823 * 23 22 21
41 41 H 1.09002 * 109.67544 * 172.57711 * 24 23 22
42 42 H 1.09004 * 109.67662 * 52.03810 * 24 23 22
43 43 H 1.09003 * 109.39811 * 288.77587 * 25 24 23
44 44 H 1.08996 * 109.33513 * 168.98395 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 2.4969 2.0462 -1.4001
5 1 1.4469 2.6527 0.7000
6 1 3.5469 1.4399 0.7000
7 6 2.0044 -1.1941 0.0005
8 1 1.4644 -2.1294 0.0005
9 6 3.5114 -1.1943 0.0000
10 7 3.9996 -2.5756 0.0001
11 6 5.3246 -2.8220 0.0001
12 8 6.1129 -1.9002 -0.0004
13 6 5.8269 -4.2429 -0.0061
14 1 5.4906 -4.7431 -0.9141
15 6 5.2875 -4.9715 1.1979
16 6 5.8219 -4.7287 2.4494
17 6 5.3243 -5.3938 3.5543
18 6 4.2984 -6.3084 3.4064
19 6 3.7676 -6.5551 2.1541
20 6 4.2623 -5.8868 1.0499
21 7 7.2912 -4.2435 0.0383
22 6 7.9515 -3.2006 0.8134
23 6 9.3887 -3.6113 1.1444
24 6 10.0826 -4.0452 -0.1524
25 6 9.4311 -5.3421 -0.6391
26 6 7.9365 -5.1950 -0.6373
27 8 7.2813 -5.9840 -1.2848
28 1 -0.4849 0.8402 -0.0004
29 1 3.8751 -0.6800 0.8895
30 1 3.8745 -0.6812 -0.8905
31 1 3.3692 -3.3128 0.0009
32 1 6.6257 -4.0165 2.5645
33 1 5.7388 -5.2008 4.5328
34 1 3.9114 -6.8299 4.2693
35 1 2.9663 -7.2699 2.0385
36 1 3.8475 -6.0796 0.0715
37 1 7.9611 -2.2751 0.2375
38 1 7.4022 -3.0385 1.7408
39 1 9.3823 -4.4411 1.8511
40 1 9.9198 -2.7634 1.5772
41 1 11.1422 -4.2158 0.0377
42 1 9.9651 -3.2692 -0.9088
43 1 9.7150 -6.1604 0.0226
44 1 9.7723 -5.5596 -1.6511
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000427617788.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:23:35
Heat of formation + Delta-G solvation = -56.646948 kcal
Electronic energy + Delta-G solvation = -27177.375646 eV
Core-core repulsion = 23479.885097 eV
Total energy + Delta-G solvation = -3697.490549 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.34816 -40.40061 -39.73546 -37.51626 -36.25727 -35.47053 -34.48068 -32.37677
-31.82649 -30.62927 -30.18758 -28.04584 -25.54603 -24.27935 -23.70342 -23.23222
-22.63384 -21.48250 -19.78235 -19.27065 -18.36435 -17.98577 -17.85098 -17.03840
-16.92580 -16.54007 -16.30096 -16.08370 -15.75885 -15.55558 -15.26915 -15.07825
-14.72849 -14.56128 -14.39315 -14.22057 -14.00199 -13.87055 -13.59969 -13.47880
-13.09695 -12.72441 -12.60350 -12.41329 -12.12219 -11.96494 -11.94044 -11.82658
-11.76360 -11.69773 -11.12565 -10.93790 -10.70844 -10.05517 -9.87569 -9.70782
-9.63396 -8.41131 -6.49005 0.28401 0.45556 1.32071 1.33862 1.43349
1.46399 1.52978 1.74788 2.26614 2.38159 2.90243 2.94075 3.50530
3.53203 3.70263 3.84125 3.90489 3.93492 3.94883 4.07156 4.19016
4.25807 4.48195 4.56825 4.57739 4.63157 4.71380 4.74327 4.86546
4.94116 4.97821 4.98811 5.06482 5.08343 5.13898 5.21845 5.27040
5.36026 5.47153 5.51109 5.55741 5.57413 6.03760 6.04322 6.41438
6.49682 6.66588 7.03673 7.08782 7.22843 8.73810
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.012539 B = 0.004553 C = 0.003784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2232.469549 B = 6148.216099 C = 7398.197486
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.028 3.972
3 Si 0.939 3.061
4 H -0.266 1.266
5 H -0.273 1.273
6 H -0.256 1.256
7 C -0.549 4.549
8 H 0.055 0.945
9 C 0.236 3.764
10 N -0.695 5.695
11 C 0.506 3.494
12 O -0.566 6.566
13 C 0.165 3.835
14 H 0.115 0.885
15 C -0.109 4.109
16 C -0.123 4.123
17 C -0.123 4.123
18 C -0.116 4.116
19 C -0.122 4.122
20 C -0.117 4.117
21 N -0.575 5.575
22 C 0.101 3.899
23 C -0.132 4.132
24 C -0.118 4.118
25 C -0.123 4.123
26 C 0.508 3.492
27 O -0.600 6.600
28 H 0.273 0.727
29 H 0.019 0.981
30 H 0.015 0.985
31 H 0.404 0.596
32 H 0.130 0.870
33 H 0.147 0.853
34 H 0.150 0.850
35 H 0.146 0.854
36 H 0.127 0.873
37 H 0.079 0.921
38 H 0.069 0.931
39 H 0.080 0.920
40 H 0.103 0.897
41 H 0.108 0.892
42 H 0.063 0.937
43 H 0.119 0.881
44 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.670 -12.044 6.741 24.029
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.173 4.173
3 Si 0.762 3.238
4 H -0.191 1.191
5 H -0.198 1.198
6 H -0.180 1.180
7 C -0.587 4.587
8 H 0.073 0.927
9 C 0.112 3.888
10 N -0.344 5.344
11 C 0.292 3.708
12 O -0.447 6.447
13 C 0.057 3.943
14 H 0.133 0.867
15 C -0.110 4.110
16 C -0.140 4.140
17 C -0.141 4.141
18 C -0.134 4.134
19 C -0.140 4.140
20 C -0.136 4.136
21 N -0.306 5.306
22 C -0.020 4.020
23 C -0.169 4.169
24 C -0.155 4.155
25 C -0.162 4.162
26 C 0.299 3.701
27 O -0.482 6.482
28 H 0.082 0.918
29 H 0.037 0.963
30 H 0.033 0.967
31 H 0.239 0.761
32 H 0.147 0.853
33 H 0.165 0.835
34 H 0.168 0.832
35 H 0.163 0.837
36 H 0.145 0.855
37 H 0.097 0.903
38 H 0.087 0.913
39 H 0.098 0.902
40 H 0.122 0.878
41 H 0.126 0.874
42 H 0.081 0.919
43 H 0.137 0.863
44 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 19.755 -11.638 6.407 23.806
hybrid contribution -0.881 0.615 -0.364 1.134
sum 18.874 -11.024 6.043 22.677
Atomic orbital electron populations
1.69993 1.07789 1.28661 1.50492 1.25608 0.95543 1.02708 0.93424
0.85834 0.79374 0.79088 0.79459 1.19065 1.19780 1.18030 1.21248
0.89920 0.94524 1.52981 0.92707 1.19149 0.93427 0.80161 0.96016
1.45999 1.06253 1.10154 1.71979 1.20822 0.82786 0.91006 0.76232
1.90594 1.54819 1.47078 1.52180 1.19602 0.83262 0.91985 0.99464
0.86708 1.19770 0.98502 0.98886 0.93849 1.21416 1.00343 1.00104
0.92169 1.21449 0.97197 0.96442 0.98984 1.21573 0.96070 0.97701
0.98071 1.21442 1.00222 0.99873 0.92429 1.21238 0.96126 0.95941
1.00276 1.47140 1.04046 1.29701 1.49706 1.22064 0.94088 0.90380
0.95466 1.22032 0.92904 1.03486 0.98497 1.21667 1.01374 0.95471
0.97001 1.21691 0.87188 1.01611 1.05717 1.21104 0.92728 0.79175
0.77097 1.90677 1.68842 1.43961 1.44689 0.91809 0.96278 0.96697
0.76057 0.85283 0.83500 0.83199 0.83657 0.85491 0.90285 0.91255
0.90157 0.87824 0.87403 0.91856 0.86342 0.87425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16
2 C 0.03 1.56 5.47 84.65 0.46 2.02 16
3 Si 0.94 43.59 27.47 68.60 1.88 45.47 16
4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16
5 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16
6 H -0.26 -11.60 6.54 99.48 0.65 -10.95 16
7 C -0.55 -30.54 9.83 25.60 0.25 -30.29 16
8 H 0.05 3.25 7.84 -2.91 -0.02 3.23 16
9 C 0.24 11.55 4.50 85.63 0.38 11.93 16
10 N -0.70 -29.00 5.44 -466.77 -2.54 -31.54 16
11 C 0.51 19.48 6.85 87.66 0.60 20.08 16
12 O -0.57 -23.72 12.89 -3.04 -0.04 -23.76 16
13 C 0.16 5.37 2.45 43.50 0.11 5.47 16
14 H 0.12 3.99 6.78 -2.39 -0.02 3.97 16
15 C -0.11 -3.20 4.66 -19.86 -0.09 -3.29 16
16 C -0.12 -3.24 9.19 22.27 0.20 -3.03 16
17 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16
18 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16
19 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16
20 C -0.12 -3.22 9.67 22.27 0.22 -3.00 16
21 N -0.58 -16.45 2.50 -810.64 -2.03 -18.48 16
22 C 0.10 2.50 4.19 86.55 0.36 2.86 16
23 C -0.13 -1.98 6.03 30.74 0.19 -1.79 16
24 C -0.12 -1.57 6.03 30.73 0.19 -1.39 16
25 C -0.12 -2.12 6.03 29.71 0.18 -1.95 16
26 C 0.51 14.24 7.47 87.71 0.66 14.90 16
27 O -0.60 -21.40 16.10 -3.05 -0.05 -21.45 16
28 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16
29 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16
30 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16
31 H 0.40 15.80 8.14 -92.71 -0.76 15.04 16
32 H 0.13 3.23 4.63 -2.91 -0.01 3.22 16
33 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16
34 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16
35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16
36 H 0.13 3.30 8.00 -2.91 -0.02 3.28 16
37 H 0.08 2.36 6.08 -2.38 -0.01 2.35 16
38 H 0.07 1.79 4.94 -2.39 -0.01 1.78 16
39 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16
40 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16
41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16
42 H 0.06 1.00 8.12 -2.38 -0.02 0.98 16
43 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16
44 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16
Total: -1.00 -72.32 354.11 2.12 -70.20
By element:
Atomic # 1 Polarization: 29.50 SS G_CDS: 0.21 Total: 29.72 kcal
Atomic # 6 Polarization: 0.89 SS G_CDS: 4.37 Total: 5.26 kcal
Atomic # 7 Polarization: -101.17 SS G_CDS: -4.27 Total: -105.44 kcal
Atomic # 8 Polarization: -45.12 SS G_CDS: -0.09 Total: -45.21 kcal
Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal
Total: -72.32 2.12 -70.20 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427617788.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.558 kcal
(2) G-P(sol) polarization free energy of solvation -72.321 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.763 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.647 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds