Wall clock time and date at job start Tue Mar 31 2020 11:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48493 * 109.47172 * 270.00659 * 3 2 1 5 5 H 1.48500 * 109.46765 * 30.00469 * 3 2 1 6 6 H 1.48499 * 109.46866 * 150.00085 * 3 2 1 7 7 C 1.39931 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99758 * 196.79338 * 7 2 1 9 9 C 1.41410 * 119.99884 * 16.78638 * 7 2 1 10 10 C 1.40779 * 120.20950 * 25.18355 * 9 7 2 11 11 C 1.37654 * 119.90076 * 179.97438 * 10 9 7 12 12 C 1.38513 * 120.32532 * 359.97438 * 11 10 9 13 13 C 1.39308 * 120.42342 * 359.97438 * 12 11 10 14 14 N 1.39742 * 119.94828 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99339 * 145.76979 * 14 13 12 16 16 O 1.21368 * 120.00400 * 354.88344 * 15 14 13 17 17 C 1.49357 * 119.99469 * 174.61551 * 15 14 13 18 18 O 1.21357 * 120.00505 * 0.26835 * 17 15 14 19 19 N 1.34781 * 119.99890 * 180.27205 * 17 15 14 20 20 C 1.46496 * 120.00282 * 179.97438 * 19 17 15 21 21 C 1.52999 * 109.47129 * 275.00204 * 20 19 17 22 22 C 1.53001 * 109.47053 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.47043 * 59.99985 * 22 21 20 24 24 C 1.53002 * 109.46878 * 300.00058 * 23 22 21 25 25 C 1.52999 * 109.47034 * 154.99876 * 20 19 17 26 26 C 1.38340 * 120.09306 * 0.27855 * 13 12 11 27 27 H 0.96996 * 120.00555 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.05260 * 359.97438 * 10 9 7 29 29 H 1.07990 * 119.83774 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.79121 * 180.02562 * 12 11 10 31 31 H 0.96990 * 120.00592 * 325.76148 * 14 13 12 32 32 H 0.97006 * 119.99348 * 359.97438 * 19 17 15 33 33 H 1.09001 * 109.47072 * 34.99921 * 20 19 17 34 34 H 1.09001 * 109.46913 * 299.99815 * 21 20 19 35 35 H 1.09003 * 109.47282 * 59.99937 * 21 20 19 36 36 H 1.08994 * 109.47183 * 300.00191 * 22 21 20 37 37 H 1.09001 * 109.46914 * 179.97438 * 22 21 20 38 38 H 1.08990 * 109.47157 * 179.97438 * 23 22 21 39 39 H 1.09001 * 109.47152 * 59.99734 * 23 22 21 40 40 H 1.09001 * 109.46965 * 299.99791 * 24 23 22 41 41 H 1.09003 * 109.46952 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47199 * 299.99832 * 25 20 19 43 43 H 1.08994 * 109.46965 * 60.00432 * 25 20 19 44 44 H 1.07996 * 120.15936 * 179.74415 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 -1.4000 5 1 1.4396 2.6526 0.7002 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2317 0.2697 9 6 1.3462 -2.4102 -0.3548 10 6 0.2110 -2.3733 -1.1865 11 6 -0.4280 -3.5438 -1.5278 12 6 0.0406 -4.7593 -1.0572 13 6 1.1634 -4.8117 -0.2342 14 7 1.6273 -6.0433 0.2354 15 6 2.9492 -6.2456 0.4041 16 8 3.7422 -5.3931 0.0614 17 6 3.4377 -7.5163 1.0184 18 8 2.6449 -8.3687 1.3611 19 7 4.7592 -7.7163 1.1921 20 6 5.2385 -8.9624 1.7951 21 6 5.2061 -8.8368 3.3196 22 6 5.7060 -10.1385 3.9494 23 6 7.1402 -10.4092 3.4903 24 6 7.1726 -10.5348 1.9658 25 6 6.6728 -9.2325 1.3360 26 6 1.8159 -3.6456 0.1239 27 1 -0.4851 0.8400 0.0004 28 1 -0.1581 -1.4280 -1.5564 29 1 -1.2990 -3.5143 -2.1655 30 1 -0.4671 -5.6724 -1.3306 31 1 0.9982 -6.7526 0.4400 32 1 5.3930 -7.0350 0.9179 33 1 4.5963 -9.7867 1.4848 34 1 5.8482 -8.0125 3.6299 35 1 4.1842 -8.6443 3.6467 36 1 5.0636 -10.9624 3.6389 37 1 5.6833 -10.0488 5.0354 38 1 7.4965 -11.3362 3.9392 39 1 7.7827 -9.5851 3.8006 40 1 6.5301 -11.3588 1.6554 41 1 8.1944 -10.7272 1.6387 42 1 6.6958 -9.3221 0.2499 43 1 7.3149 -8.4083 1.6464 44 1 2.6840 -3.6846 0.7653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453560597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:22 Heat of formation + Delta-G solvation = -71.123478 kcal Electronic energy + Delta-G solvation = -25524.564925 eV Core-core repulsion = 21826.446627 eV Total energy + Delta-G solvation = -3698.118298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70695 -39.28415 -38.02135 -37.11121 -34.92225 -34.12361 -33.02036 -31.10204 -29.89149 -29.80480 -28.43227 -25.38655 -24.81327 -23.00196 -22.40758 -21.14950 -20.78849 -20.40240 -19.58375 -18.36648 -17.53105 -16.68257 -16.01886 -15.72094 -15.45719 -15.16095 -14.88536 -14.65777 -14.51134 -14.35344 -13.91312 -13.73701 -13.19838 -13.05763 -12.90455 -12.74343 -12.52153 -12.21432 -11.74840 -11.64877 -11.49522 -11.42344 -11.26601 -11.16140 -10.99604 -10.88049 -10.79439 -10.56136 -10.48693 -10.10719 -9.69568 -9.44918 -9.28745 -9.11478 -9.00982 -7.50153 -7.00365 -6.74911 -4.37348 1.53921 2.49278 2.75627 2.92946 3.08236 3.12607 3.19466 3.56630 3.85484 3.94780 4.33051 4.41020 4.58670 4.61545 4.72924 4.80231 4.90432 5.10239 5.14096 5.15640 5.28864 5.43660 5.66488 5.68355 5.72795 5.73193 5.78695 5.89329 5.99635 6.07191 6.20632 6.24073 6.35424 6.60017 6.84100 6.97611 7.01014 7.12226 7.22551 7.44518 7.64527 7.82026 7.90127 8.04041 8.08616 8.16328 8.45094 8.63621 8.89336 8.93474 10.18874 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.002635 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.808302 B =10623.570582 C =11550.070745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.168 4.168 11 C -0.092 4.092 12 C -0.255 4.255 13 C 0.145 3.855 14 N -0.634 5.634 15 C 0.495 3.505 16 O -0.499 6.499 17 C 0.513 3.487 18 O -0.524 6.524 19 N -0.701 5.701 20 C 0.144 3.856 21 C -0.132 4.132 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.209 4.209 27 H 0.281 0.719 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.410 0.590 32 H 0.413 0.587 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.621 -16.244 4.487 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.187 4.187 11 C -0.111 4.111 12 C -0.276 4.276 13 C 0.053 3.947 14 N -0.278 5.278 15 C 0.276 3.724 16 O -0.374 6.374 17 C 0.294 3.706 18 O -0.400 6.400 19 N -0.354 5.354 20 C 0.040 3.960 21 C -0.171 4.171 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.230 4.230 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.246 0.754 32 H 0.249 0.751 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.435 -16.097 4.530 19.711 hybrid contribution 0.221 0.738 0.039 0.771 sum 10.656 -15.360 4.569 19.245 Atomic orbital electron populations 1.69817 1.07544 1.29220 1.35368 1.25912 0.94754 1.01327 0.92230 0.86286 0.80495 0.80456 0.79340 1.19243 1.20340 1.18586 1.19584 0.97808 0.90895 1.40432 0.90280 1.17479 0.90953 0.91557 0.88390 1.21390 0.99191 0.96935 1.01216 1.20477 0.98568 0.92581 0.99460 1.20075 1.01988 0.97145 1.08416 1.17449 0.96575 0.82794 0.97851 1.43139 1.06413 1.15608 1.62687 1.19990 0.83886 0.87454 0.81062 1.90810 1.54465 1.44461 1.47643 1.20320 0.83354 0.87593 0.79331 1.90731 1.54771 1.44848 1.49632 1.45857 1.06938 1.20843 1.61719 1.21098 0.95514 0.86479 0.92903 1.21955 1.02318 0.98322 0.94498 1.21492 0.96289 0.97407 1.00229 1.21589 0.97036 1.01765 0.95626 1.21485 1.01348 0.96988 0.95457 1.21837 0.94851 0.98881 1.01055 1.20961 1.04348 0.90955 1.06742 0.90860 0.86168 0.88797 0.88979 0.75381 0.75070 0.89109 0.91463 0.91170 0.91676 0.91617 0.91842 0.91802 0.91611 0.91415 0.91014 0.91022 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.48 10.94 55.55 0.61 -19.87 16 2 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 3 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.37 9.05 -37.74 -0.34 -12.71 16 8 H 0.08 2.10 7.90 -52.49 -0.41 1.68 16 9 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 10 C -0.17 -4.36 8.69 -38.84 -0.34 -4.70 16 11 C -0.09 -2.13 10.02 -39.69 -0.40 -2.53 16 12 C -0.25 -5.65 9.97 -39.08 -0.39 -6.04 16 13 C 0.14 3.31 6.25 -83.82 -0.52 2.78 16 14 N -0.63 -12.07 5.32 -10.34 -0.05 -12.13 16 15 C 0.50 9.12 7.61 -11.63 -0.09 9.03 16 16 O -0.50 -10.47 14.23 5.48 0.08 -10.39 16 17 C 0.51 7.86 7.85 -11.63 -0.09 7.77 16 18 O -0.52 -8.68 16.15 5.49 0.09 -8.59 16 19 N -0.70 -8.44 5.07 -54.27 -0.28 -8.71 16 20 C 0.14 1.41 2.45 -67.93 -0.17 1.24 16 21 C -0.13 -1.24 5.49 -26.73 -0.15 -1.39 16 22 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 23 C -0.12 -0.77 5.92 -26.73 -0.16 -0.92 16 24 C -0.11 -0.71 5.92 -26.71 -0.16 -0.87 16 25 C -0.13 -0.95 5.39 -26.71 -0.14 -1.09 16 26 C -0.21 -5.35 8.39 -38.67 -0.32 -5.68 16 27 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 28 H 0.12 3.20 6.17 -52.48 -0.32 2.87 16 29 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.41 6.78 8.30 -40.82 -0.34 6.45 16 32 H 0.41 4.64 8.07 -40.82 -0.33 4.31 16 33 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.11 2.75 6.48 -52.49 -0.34 2.41 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -29.71 362.60 -9.58 -39.29 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.35 Total: 12.78 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -4.11 Total: -11.67 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.28 Total: -40.71 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.17 Total: -18.98 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.71 -9.58 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453560597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.832 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds