Wall clock time and date at job start Tue Mar 31 2020 11:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48493 * 109.47172 * 270.00659 * 3 2 1 5 5 H 1.48500 * 109.46765 * 30.00469 * 3 2 1 6 6 H 1.48499 * 109.46866 * 150.00085 * 3 2 1 7 7 C 1.39931 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99758 * 196.79338 * 7 2 1 9 9 C 1.41410 * 119.99884 * 16.78638 * 7 2 1 10 10 C 1.40779 * 120.20950 * 25.18355 * 9 7 2 11 11 C 1.37654 * 119.90076 * 179.97438 * 10 9 7 12 12 C 1.38513 * 120.32532 * 359.97438 * 11 10 9 13 13 C 1.39308 * 120.42342 * 359.97438 * 12 11 10 14 14 N 1.39742 * 119.94828 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99339 * 145.76979 * 14 13 12 16 16 O 1.21368 * 120.00400 * 354.88344 * 15 14 13 17 17 C 1.49357 * 119.99469 * 174.61551 * 15 14 13 18 18 O 1.21357 * 120.00505 * 0.26835 * 17 15 14 19 19 N 1.34781 * 119.99890 * 180.27205 * 17 15 14 20 20 C 1.46496 * 120.00282 * 179.97438 * 19 17 15 21 21 C 1.52999 * 109.47129 * 275.00204 * 20 19 17 22 22 C 1.53001 * 109.47053 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.47043 * 59.99985 * 22 21 20 24 24 C 1.53002 * 109.46878 * 300.00058 * 23 22 21 25 25 C 1.52999 * 109.47034 * 154.99876 * 20 19 17 26 26 C 1.38340 * 120.09306 * 0.27855 * 13 12 11 27 27 H 0.96996 * 120.00555 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.05260 * 359.97438 * 10 9 7 29 29 H 1.07990 * 119.83774 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.79121 * 180.02562 * 12 11 10 31 31 H 0.96990 * 120.00592 * 325.76148 * 14 13 12 32 32 H 0.97006 * 119.99348 * 359.97438 * 19 17 15 33 33 H 1.09001 * 109.47072 * 34.99921 * 20 19 17 34 34 H 1.09001 * 109.46913 * 299.99815 * 21 20 19 35 35 H 1.09003 * 109.47282 * 59.99937 * 21 20 19 36 36 H 1.08994 * 109.47183 * 300.00191 * 22 21 20 37 37 H 1.09001 * 109.46914 * 179.97438 * 22 21 20 38 38 H 1.08990 * 109.47157 * 179.97438 * 23 22 21 39 39 H 1.09001 * 109.47152 * 59.99734 * 23 22 21 40 40 H 1.09001 * 109.46965 * 299.99791 * 24 23 22 41 41 H 1.09003 * 109.46952 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47199 * 299.99832 * 25 20 19 43 43 H 1.08994 * 109.46965 * 60.00432 * 25 20 19 44 44 H 1.07996 * 120.15936 * 179.74415 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 -1.4000 5 1 1.4396 2.6526 0.7002 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2317 0.2697 9 6 1.3462 -2.4102 -0.3548 10 6 0.2110 -2.3733 -1.1865 11 6 -0.4280 -3.5438 -1.5278 12 6 0.0406 -4.7593 -1.0572 13 6 1.1634 -4.8117 -0.2342 14 7 1.6273 -6.0433 0.2354 15 6 2.9492 -6.2456 0.4041 16 8 3.7422 -5.3931 0.0614 17 6 3.4377 -7.5163 1.0184 18 8 2.6449 -8.3687 1.3611 19 7 4.7592 -7.7163 1.1921 20 6 5.2385 -8.9624 1.7951 21 6 5.2061 -8.8368 3.3196 22 6 5.7060 -10.1385 3.9494 23 6 7.1402 -10.4092 3.4903 24 6 7.1726 -10.5348 1.9658 25 6 6.6728 -9.2325 1.3360 26 6 1.8159 -3.6456 0.1239 27 1 -0.4851 0.8400 0.0004 28 1 -0.1581 -1.4280 -1.5564 29 1 -1.2990 -3.5143 -2.1655 30 1 -0.4671 -5.6724 -1.3306 31 1 0.9982 -6.7526 0.4400 32 1 5.3930 -7.0350 0.9179 33 1 4.5963 -9.7867 1.4848 34 1 5.8482 -8.0125 3.6299 35 1 4.1842 -8.6443 3.6467 36 1 5.0636 -10.9624 3.6389 37 1 5.6833 -10.0488 5.0354 38 1 7.4965 -11.3362 3.9392 39 1 7.7827 -9.5851 3.8006 40 1 6.5301 -11.3588 1.6554 41 1 8.1944 -10.7272 1.6387 42 1 6.6958 -9.3221 0.2499 43 1 7.3149 -8.4083 1.6464 44 1 2.6840 -3.6846 0.7653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453560597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:22 Heat of formation + Delta-G solvation = -88.990486 kcal Electronic energy + Delta-G solvation = -25525.339697 eV Core-core repulsion = 21826.446627 eV Total energy + Delta-G solvation = -3698.893070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06183 -40.54403 -39.16531 -38.73910 -36.49487 -35.38079 -34.74944 -31.80108 -31.71795 -30.76019 -30.10612 -27.31237 -26.16725 -23.69252 -23.47858 -22.86593 -22.30213 -21.40341 -20.77905 -19.85168 -19.16398 -17.97082 -17.45394 -17.04320 -16.95598 -16.67084 -16.47813 -15.94273 -15.49478 -15.30257 -15.06026 -14.92938 -14.69287 -14.63597 -14.05583 -13.83493 -13.58447 -13.49995 -13.14654 -13.08543 -13.03962 -12.89352 -12.70972 -12.28031 -12.19614 -12.08161 -11.92526 -11.58511 -11.50798 -11.41577 -11.24913 -11.17471 -10.94076 -10.60730 -10.27785 -9.44128 -8.85703 -8.63970 -6.38833 0.11015 0.93441 1.02653 1.28574 1.37691 1.51025 1.51258 2.09288 2.20885 2.58931 2.71464 3.32648 3.66280 3.69761 3.77054 3.99089 4.18753 4.27564 4.38827 4.42617 4.51879 4.54625 4.57680 4.65735 4.85757 4.89135 4.97736 5.04833 5.06879 5.08930 5.10813 5.18832 5.20761 5.25179 5.28312 5.34722 5.37192 5.52171 5.59312 5.76162 5.96926 6.03265 6.07510 6.26459 6.37131 6.62326 6.72320 6.87090 6.94474 6.99839 8.31977 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.002635 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.808302 B =10623.570582 C =11550.070745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.498 4.498 8 H 0.067 0.933 9 C 0.090 3.910 10 C -0.193 4.193 11 C -0.089 4.089 12 C -0.247 4.247 13 C 0.150 3.850 14 N -0.630 5.630 15 C 0.494 3.506 16 O -0.527 6.527 17 C 0.522 3.478 18 O -0.536 6.536 19 N -0.685 5.685 20 C 0.141 3.859 21 C -0.131 4.131 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.112 4.112 25 C -0.123 4.123 26 C -0.233 4.233 27 H 0.290 0.710 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.424 0.576 32 H 0.418 0.582 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.408 -17.559 4.467 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.528 4.528 8 H 0.086 0.914 9 C 0.087 3.913 10 C -0.212 4.212 11 C -0.108 4.108 12 C -0.268 4.268 13 C 0.057 3.943 14 N -0.276 5.276 15 C 0.276 3.724 16 O -0.403 6.403 17 C 0.302 3.698 18 O -0.414 6.414 19 N -0.337 5.337 20 C 0.038 3.962 21 C -0.169 4.169 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.150 4.150 25 C -0.161 4.161 26 C -0.254 4.254 27 H 0.101 0.899 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.263 0.737 32 H 0.255 0.745 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.235 -17.462 4.522 21.251 hybrid contribution -0.034 0.999 0.058 1.002 sum 11.201 -16.463 4.580 20.432 Atomic orbital electron populations 1.69848 1.08782 1.30677 1.35360 1.26721 0.95590 1.04322 0.91161 0.85197 0.78946 0.75864 0.79649 1.18454 1.18811 1.18674 1.19757 0.97673 0.92444 1.42893 0.91432 1.17819 0.91935 0.92307 0.89214 1.21374 0.99854 0.97630 1.02376 1.20839 0.98952 0.91968 0.99048 1.20487 1.01256 0.98275 1.06810 1.17521 0.96246 0.83407 0.97083 1.43059 1.07188 1.14725 1.62624 1.20597 0.83363 0.88259 0.80138 1.90799 1.55112 1.45792 1.48601 1.19695 0.84396 0.86135 0.79587 1.90732 1.55296 1.44743 1.50609 1.45929 1.05703 1.21689 1.60353 1.21335 0.96916 0.84776 0.93126 1.21934 1.01092 0.99742 0.94166 1.21486 0.97185 0.96029 1.00443 1.21585 0.95963 1.02542 0.95670 1.21498 1.02154 0.96075 0.95313 1.21839 0.92956 0.99979 1.01359 1.20933 1.04750 0.91933 1.07804 0.89924 0.87464 0.85624 0.85201 0.73730 0.74484 0.89951 0.91193 0.93518 0.91797 0.91058 0.90547 0.91525 0.91523 0.89907 0.90703 0.90297 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.22 10.94 21.82 0.24 -42.98 16 2 C 0.04 1.92 5.16 85.25 0.44 2.36 16 3 Si 0.98 39.18 29.59 68.60 2.03 41.21 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.50 -28.21 9.05 23.46 0.21 -28.00 16 8 H 0.07 3.81 7.90 -2.91 -0.02 3.79 16 9 C 0.09 5.10 5.57 -21.31 -0.12 4.98 16 10 C -0.19 -10.24 8.69 22.75 0.20 -10.04 16 11 C -0.09 -4.06 10.02 22.20 0.22 -3.84 16 12 C -0.25 -10.55 9.97 22.59 0.23 -10.32 16 13 C 0.15 6.85 6.25 38.16 0.24 7.09 16 14 N -0.63 -23.69 5.32 -304.97 -1.62 -25.31 16 15 C 0.49 18.24 7.61 87.24 0.66 18.91 16 16 O -0.53 -22.58 14.23 -3.30 -0.05 -22.62 16 17 C 0.52 15.76 7.85 87.24 0.68 16.45 16 18 O -0.54 -17.38 16.15 -3.27 -0.05 -17.44 16 19 N -0.68 -16.02 5.07 -443.97 -2.25 -18.27 16 20 C 0.14 2.61 2.45 44.99 0.11 2.72 16 21 C -0.13 -2.35 5.49 30.59 0.17 -2.18 16 22 C -0.11 -1.51 5.92 30.60 0.18 -1.32 16 23 C -0.12 -1.20 5.92 30.60 0.18 -1.02 16 24 C -0.11 -1.11 5.92 30.61 0.18 -0.93 16 25 C -0.12 -1.57 5.39 30.61 0.17 -1.41 16 26 C -0.23 -12.37 8.39 22.86 0.19 -12.17 16 27 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 28 H 0.11 5.88 6.17 -2.91 -0.02 5.87 16 29 H 0.13 4.83 8.06 -2.92 -0.02 4.81 16 30 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.42 13.48 8.30 -92.72 -0.77 12.72 16 32 H 0.42 9.12 8.07 -92.70 -0.75 8.37 16 33 H 0.08 1.71 7.58 -2.39 -0.02 1.69 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.09 4.94 6.48 -2.91 -0.02 4.92 16 Total: -1.00 -66.17 362.60 1.76 -64.42 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -0.49 Total: 39.73 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.95 Total: -18.73 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -3.63 Total: -86.56 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.10 Total: -40.06 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -66.17 1.76 -64.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453560597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.575 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds