Wall clock time and date at job start Tue Mar 31 2020 11:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86796 * 119.99738 * 2 1 4 4 H 1.48498 * 109.47200 * 239.99669 * 3 2 1 5 5 H 1.48499 * 109.47722 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47016 * 119.99992 * 3 2 1 7 7 C 1.39926 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99565 * 196.79146 * 7 2 1 9 9 C 1.41412 * 120.00336 * 16.79569 * 7 2 1 10 10 C 1.40775 * 120.20617 * 25.17422 * 9 7 2 11 11 C 1.37656 * 119.89739 * 179.97438 * 10 9 7 12 12 C 1.38517 * 120.32947 * 0.02562 * 11 10 9 13 13 C 1.39306 * 120.41898 * 359.96824 * 12 11 10 14 14 N 1.39742 * 119.95015 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99907 * 145.76746 * 14 13 12 16 16 O 1.21377 * 119.99641 * 354.89634 * 15 14 13 17 17 C 1.49349 * 120.00095 * 174.89056 * 15 14 13 18 18 O 1.21361 * 120.00340 * 0.02562 * 17 15 14 19 19 N 1.34780 * 120.00095 * 179.97438 * 17 15 14 20 20 C 1.46501 * 120.00022 * 180.02562 * 19 17 15 21 21 C 1.52997 * 109.47027 * 179.97438 * 20 19 17 22 22 C 1.54272 * 110.03416 * 292.91053 * 21 20 19 23 23 C 1.54965 * 104.15827 * 217.13773 * 22 21 20 24 24 C 1.54885 * 102.77890 * 37.88245 * 23 22 21 25 25 C 1.53873 * 110.03480 * 175.69109 * 21 20 19 26 26 C 1.38337 * 120.09649 * 0.28491 * 13 12 11 27 27 H 0.97001 * 119.99843 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.05604 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.83893 * 179.97438 * 11 10 9 30 30 H 1.07993 * 119.79087 * 180.02562 * 12 11 10 31 31 H 0.97002 * 120.00365 * 325.76870 * 14 13 12 32 32 H 0.96996 * 119.99546 * 359.72662 * 19 17 15 33 33 H 1.08992 * 109.47010 * 300.00141 * 20 19 17 34 34 H 1.09002 * 109.46697 * 60.00218 * 20 19 17 35 35 H 1.09000 * 110.01849 * 54.29948 * 21 20 19 36 36 H 1.09000 * 110.48517 * 335.78181 * 22 21 20 37 37 H 1.09005 * 110.48573 * 98.42840 * 22 21 20 38 38 H 1.09011 * 110.71709 * 279.56928 * 23 22 21 39 39 H 1.09001 * 110.92533 * 156.29644 * 23 22 21 40 40 H 1.08999 * 110.48924 * 203.40296 * 24 23 22 41 41 H 1.09005 * 110.59217 * 80.82080 * 24 23 22 42 42 H 1.09000 * 110.03346 * 238.57458 * 25 21 20 43 43 H 1.09001 * 110.02825 * 359.95473 * 25 21 20 44 44 H 1.08000 * 120.17080 * 179.74350 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2126 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2708 9 6 1.3462 -2.4105 -0.3528 10 6 0.2110 -2.3742 -1.1846 11 6 -0.4280 -3.5450 -1.5249 12 6 0.0400 -4.7601 -1.0526 13 6 1.1622 -4.8117 -0.2288 14 7 1.6262 -6.0430 0.2418 15 6 2.9479 -6.2449 0.4115 16 8 3.7409 -5.3922 0.0690 17 6 3.4367 -7.5177 1.0211 18 8 2.6439 -8.3704 1.3632 19 7 4.7585 -7.7197 1.1903 20 6 5.2380 -8.9685 1.7878 21 6 6.7659 -8.9433 1.8647 22 6 7.3671 -8.9745 0.4443 23 6 8.6315 -9.8590 0.5873 24 6 8.1727 -10.9543 1.5817 25 6 7.2781 -10.2012 2.5878 26 6 1.8147 -3.6454 0.1285 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1576 -1.4293 -1.5558 29 1 -1.2991 -3.5160 -2.1628 30 1 -0.4678 -5.6733 -1.3254 31 1 0.9970 -6.7525 0.4462 32 1 5.3924 -7.0401 0.9126 33 1 4.8250 -9.0733 2.7909 34 1 4.9194 -9.8108 1.1737 35 1 7.0982 -8.0486 2.3912 36 1 6.6647 -9.4241 -0.2575 37 1 7.6384 -7.9689 0.1227 38 1 9.4598 -9.2837 1.0013 39 1 8.9094 -10.2987 -0.3706 40 1 9.0319 -11.3930 2.0891 41 1 7.6009 -11.7255 1.0655 42 1 7.8597 -9.9170 3.4648 43 1 6.4381 -10.8293 2.8846 44 1 2.6823 -3.6837 0.7705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453598300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:26 Heat of formation + Delta-G solvation = -68.302555 kcal Electronic energy + Delta-G solvation = -25219.289025 eV Core-core repulsion = 21521.293051 eV Total energy + Delta-G solvation = -3697.995974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60870 -39.14853 -38.26648 -37.11786 -35.11140 -34.29119 -33.02854 -30.34520 -29.87068 -29.03500 -28.49138 -25.79888 -25.32696 -23.54076 -21.34187 -21.03311 -20.78512 -20.35519 -19.51926 -18.36243 -17.54014 -16.74739 -16.17131 -15.88292 -15.51020 -15.44033 -15.06586 -14.77185 -14.59509 -14.34651 -13.87003 -13.67796 -13.44931 -13.05465 -12.90629 -12.57590 -12.20826 -11.76130 -11.70129 -11.49536 -11.42549 -11.36892 -11.27910 -11.19880 -11.13340 -10.97508 -10.90468 -10.82575 -10.51667 -10.11835 -9.70709 -9.45088 -9.33001 -9.10552 -9.01714 -7.49910 -7.00270 -6.74749 -4.37181 1.53906 2.50760 2.76860 2.93075 3.07498 3.10714 3.20601 3.56998 3.86575 3.94720 4.18943 4.24696 4.32605 4.61653 4.72877 4.84536 5.00375 5.08166 5.10849 5.25145 5.32080 5.44514 5.50888 5.56617 5.63000 5.66647 5.74446 5.86292 5.96408 6.00920 6.15664 6.20749 6.35598 6.60034 6.83631 6.97694 7.01050 7.11021 7.22311 7.44069 7.64581 7.80878 7.90250 8.03743 8.08641 8.16297 8.45066 8.63496 8.89325 8.93566 10.18989 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.002546 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.900668 B =10994.071472 C =12096.271134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.168 4.168 11 C -0.092 4.092 12 C -0.255 4.255 13 C 0.145 3.855 14 N -0.633 5.633 15 C 0.496 3.504 16 O -0.500 6.500 17 C 0.511 3.489 18 O -0.525 6.525 19 N -0.703 5.703 20 C 0.125 3.875 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.209 4.209 27 H 0.281 0.719 28 H 0.120 0.880 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.410 0.590 32 H 0.414 0.586 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.038 -16.039 2.861 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.187 4.187 11 C -0.111 4.111 12 C -0.276 4.276 13 C 0.053 3.947 14 N -0.278 5.278 15 C 0.277 3.723 16 O -0.374 6.374 17 C 0.292 3.708 18 O -0.401 6.401 19 N -0.356 5.356 20 C 0.002 3.998 21 C -0.126 4.126 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.155 4.155 26 C -0.230 4.230 27 H 0.092 0.908 28 H 0.138 0.862 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.246 0.754 32 H 0.250 0.750 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.848 -15.900 2.922 20.043 hybrid contribution 0.233 0.685 0.073 0.727 sum 12.081 -15.215 2.994 19.658 Atomic orbital electron populations 1.69816 1.07538 1.29320 1.35276 1.25910 0.94760 1.01317 0.92230 0.86342 0.80108 0.80089 0.80037 1.18777 1.20352 1.19005 1.19542 0.97781 0.90901 1.40518 0.90332 1.17473 0.90952 0.91546 0.88389 1.21386 0.99191 0.96926 1.01226 1.20479 0.98567 0.92580 0.99453 1.20073 1.02013 0.97154 1.08395 1.17448 0.96586 0.82794 0.97835 1.43139 1.06418 1.15635 1.62636 1.19968 0.83893 0.87428 0.81058 1.90812 1.54471 1.44479 1.47635 1.20312 0.83263 0.87676 0.79567 1.90738 1.54855 1.45085 1.49435 1.45761 1.06922 1.20870 1.62087 1.21636 0.93381 0.85980 0.98840 1.22065 0.93492 0.99720 0.97286 1.22527 0.97229 1.00532 0.95962 1.22504 0.97561 0.96886 0.99307 1.22365 0.99132 0.97830 0.96967 1.22117 0.99482 0.95638 0.98246 1.20965 1.04379 0.90962 1.06737 0.90806 0.86173 0.88799 0.88975 0.75372 0.74978 0.90990 0.90917 0.89967 0.91125 0.91184 0.91452 0.91532 0.91680 0.91554 0.91338 0.91265 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.48 10.94 55.55 0.61 -19.87 16 2 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 3 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.37 9.05 -37.74 -0.34 -12.71 16 8 H 0.08 2.07 7.90 -52.49 -0.41 1.66 16 9 C 0.12 3.25 5.57 -106.85 -0.59 2.65 16 10 C -0.17 -4.36 8.69 -38.84 -0.34 -4.69 16 11 C -0.09 -2.13 10.02 -39.69 -0.40 -2.53 16 12 C -0.26 -5.65 9.97 -39.08 -0.39 -6.04 16 13 C 0.14 3.31 6.25 -83.82 -0.52 2.78 16 14 N -0.63 -12.07 5.32 -10.34 -0.06 -12.13 16 15 C 0.50 9.13 7.61 -11.63 -0.09 9.04 16 16 O -0.50 -10.45 14.22 5.47 0.08 -10.37 16 17 C 0.51 7.85 7.89 -11.63 -0.09 7.76 16 18 O -0.53 -8.79 16.48 5.49 0.09 -8.70 16 19 N -0.70 -8.38 5.39 -60.77 -0.33 -8.71 16 20 C 0.12 1.18 4.73 -4.04 -0.02 1.16 16 21 C -0.11 -0.78 2.97 -89.50 -0.27 -1.05 16 22 C -0.12 -0.92 6.05 -25.03 -0.15 -1.07 16 23 C -0.13 -0.79 6.91 -24.70 -0.17 -0.96 16 24 C -0.13 -0.74 6.83 -25.08 -0.17 -0.92 16 25 C -0.12 -0.73 6.46 -25.62 -0.17 -0.89 16 26 C -0.21 -5.36 8.39 -38.66 -0.32 -5.69 16 27 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 28 H 0.12 3.19 6.17 -52.48 -0.32 2.87 16 29 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.41 6.79 8.30 -40.82 -0.34 6.45 16 32 H 0.41 4.64 7.80 -40.82 -0.32 4.32 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.70 8.02 -51.93 -0.42 0.29 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.56 7.77 -51.93 -0.40 0.16 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.42 7.67 -51.93 -0.40 0.02 16 44 H 0.11 2.75 6.48 -52.49 -0.34 2.41 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -29.83 365.44 -9.57 -39.40 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.32 Total: 12.41 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -4.12 Total: -11.34 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.23 Total: -40.71 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.17 Total: -19.07 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.83 -9.57 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453598300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.907 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds