Wall clock time and date at job start Tue Mar 31 2020 11:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86796 * 119.99738 * 2 1 4 4 H 1.48498 * 109.47200 * 239.99669 * 3 2 1 5 5 H 1.48499 * 109.47722 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47016 * 119.99992 * 3 2 1 7 7 C 1.39926 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99565 * 196.79146 * 7 2 1 9 9 C 1.41412 * 120.00336 * 16.79569 * 7 2 1 10 10 C 1.40775 * 120.20617 * 25.17422 * 9 7 2 11 11 C 1.37656 * 119.89739 * 179.97438 * 10 9 7 12 12 C 1.38517 * 120.32947 * 0.02562 * 11 10 9 13 13 C 1.39306 * 120.41898 * 359.96824 * 12 11 10 14 14 N 1.39742 * 119.95015 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99907 * 145.76746 * 14 13 12 16 16 O 1.21377 * 119.99641 * 354.89634 * 15 14 13 17 17 C 1.49349 * 120.00095 * 174.89056 * 15 14 13 18 18 O 1.21361 * 120.00340 * 0.02562 * 17 15 14 19 19 N 1.34780 * 120.00095 * 179.97438 * 17 15 14 20 20 C 1.46501 * 120.00022 * 180.02562 * 19 17 15 21 21 C 1.52997 * 109.47027 * 179.97438 * 20 19 17 22 22 C 1.54272 * 110.03416 * 292.91053 * 21 20 19 23 23 C 1.54965 * 104.15827 * 217.13773 * 22 21 20 24 24 C 1.54885 * 102.77890 * 37.88245 * 23 22 21 25 25 C 1.53873 * 110.03480 * 175.69109 * 21 20 19 26 26 C 1.38337 * 120.09649 * 0.28491 * 13 12 11 27 27 H 0.97001 * 119.99843 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.05604 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.83893 * 179.97438 * 11 10 9 30 30 H 1.07993 * 119.79087 * 180.02562 * 12 11 10 31 31 H 0.97002 * 120.00365 * 325.76870 * 14 13 12 32 32 H 0.96996 * 119.99546 * 359.72662 * 19 17 15 33 33 H 1.08992 * 109.47010 * 300.00141 * 20 19 17 34 34 H 1.09002 * 109.46697 * 60.00218 * 20 19 17 35 35 H 1.09000 * 110.01849 * 54.29948 * 21 20 19 36 36 H 1.09000 * 110.48517 * 335.78181 * 22 21 20 37 37 H 1.09005 * 110.48573 * 98.42840 * 22 21 20 38 38 H 1.09011 * 110.71709 * 279.56928 * 23 22 21 39 39 H 1.09001 * 110.92533 * 156.29644 * 23 22 21 40 40 H 1.08999 * 110.48924 * 203.40296 * 24 23 22 41 41 H 1.09005 * 110.59217 * 80.82080 * 24 23 22 42 42 H 1.09000 * 110.03346 * 238.57458 * 25 21 20 43 43 H 1.09001 * 110.02825 * 359.95473 * 25 21 20 44 44 H 1.08000 * 120.17080 * 179.74350 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2126 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2708 9 6 1.3462 -2.4105 -0.3528 10 6 0.2110 -2.3742 -1.1846 11 6 -0.4280 -3.5450 -1.5249 12 6 0.0400 -4.7601 -1.0526 13 6 1.1622 -4.8117 -0.2288 14 7 1.6262 -6.0430 0.2418 15 6 2.9479 -6.2449 0.4115 16 8 3.7409 -5.3922 0.0690 17 6 3.4367 -7.5177 1.0211 18 8 2.6439 -8.3704 1.3632 19 7 4.7585 -7.7197 1.1903 20 6 5.2380 -8.9685 1.7878 21 6 6.7659 -8.9433 1.8647 22 6 7.3671 -8.9745 0.4443 23 6 8.6315 -9.8590 0.5873 24 6 8.1727 -10.9543 1.5817 25 6 7.2781 -10.2012 2.5878 26 6 1.8147 -3.6454 0.1285 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1576 -1.4293 -1.5558 29 1 -1.2991 -3.5160 -2.1628 30 1 -0.4678 -5.6733 -1.3254 31 1 0.9970 -6.7525 0.4462 32 1 5.3924 -7.0401 0.9126 33 1 4.8250 -9.0733 2.7909 34 1 4.9194 -9.8108 1.1737 35 1 7.0982 -8.0486 2.3912 36 1 6.6647 -9.4241 -0.2575 37 1 7.6384 -7.9689 0.1227 38 1 9.4598 -9.2837 1.0013 39 1 8.9094 -10.2987 -0.3706 40 1 9.0319 -11.3930 2.0891 41 1 7.6009 -11.7255 1.0655 42 1 7.8597 -9.9170 3.4648 43 1 6.4381 -10.8293 2.8846 44 1 2.6823 -3.6837 0.7705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453598300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:25 Heat of formation + Delta-G solvation = -86.164799 kcal Electronic energy + Delta-G solvation = -25220.063590 eV Core-core repulsion = 21521.293051 eV Total energy + Delta-G solvation = -3698.770539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00145 -40.36673 -39.22325 -38.81782 -36.55511 -35.65069 -34.79154 -31.79533 -31.14275 -30.23719 -29.55547 -27.32199 -26.81471 -24.73101 -22.98731 -22.57202 -21.61807 -21.35828 -20.65867 -19.81298 -19.16055 -17.95951 -17.45053 -17.19390 -16.99941 -16.64372 -16.48225 -16.22230 -15.81495 -15.53134 -15.13160 -14.86249 -14.67054 -14.41740 -14.16917 -14.00254 -13.57647 -13.35522 -13.07789 -13.04502 -12.88641 -12.70356 -12.22208 -12.19604 -11.99486 -11.92661 -11.88752 -11.82359 -11.55217 -11.52778 -11.34581 -11.18825 -10.93417 -10.63098 -10.35614 -9.43492 -8.85108 -8.63469 -6.38260 0.11659 0.94556 1.03648 1.29760 1.37780 1.48773 1.53421 2.09978 2.21011 2.61201 2.72147 3.34234 3.58953 3.66956 3.70314 3.76196 4.30092 4.34737 4.43134 4.46615 4.57603 4.58317 4.66931 4.77377 4.83221 4.89050 4.89695 5.02675 5.05355 5.07259 5.08953 5.10039 5.12849 5.26673 5.28509 5.33483 5.45953 5.50052 5.58820 5.76591 5.95681 6.03805 6.07503 6.27000 6.36761 6.62538 6.71623 6.87585 6.94855 7.00447 8.32255 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.002546 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.900668 B =10994.071472 C =12096.271134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.499 4.499 8 H 0.068 0.932 9 C 0.090 3.910 10 C -0.193 4.193 11 C -0.089 4.089 12 C -0.248 4.248 13 C 0.150 3.850 14 N -0.629 5.629 15 C 0.495 3.505 16 O -0.527 6.527 17 C 0.520 3.480 18 O -0.538 6.538 19 N -0.686 5.686 20 C 0.124 3.876 21 C -0.101 4.101 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.233 4.233 27 H 0.290 0.710 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.424 0.576 32 H 0.418 0.582 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.510 -17.258 2.980 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.528 4.528 8 H 0.086 0.914 9 C 0.087 3.913 10 C -0.212 4.212 11 C -0.108 4.108 12 C -0.268 4.268 13 C 0.058 3.942 14 N -0.276 5.276 15 C 0.277 3.723 16 O -0.403 6.403 17 C 0.300 3.700 18 O -0.416 6.416 19 N -0.338 5.338 20 C 0.002 3.998 21 C -0.120 4.120 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.153 4.153 26 C -0.255 4.255 27 H 0.101 0.899 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.263 0.737 32 H 0.255 0.745 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.335 -17.168 3.053 21.359 hybrid contribution 0.093 0.910 0.032 0.915 sum 12.427 -16.258 3.084 20.695 Atomic orbital electron populations 1.69851 1.08778 1.30731 1.35295 1.26721 0.95594 1.04316 0.91169 0.85257 0.78845 0.75659 0.79966 1.18567 1.18658 1.18640 1.19732 0.97700 0.92433 1.42950 0.91379 1.17819 0.91938 0.92320 0.89223 1.21370 0.99864 0.97620 1.02394 1.20841 0.98949 0.91977 0.99047 1.20487 1.01291 0.98275 1.06791 1.17517 0.96241 0.83422 0.97057 1.43056 1.07202 1.14739 1.62580 1.20582 0.83364 0.88255 0.80144 1.90803 1.55119 1.45818 1.48586 1.19670 0.84294 0.86194 0.79853 1.90740 1.55378 1.44964 1.50478 1.45812 1.05658 1.21742 1.60619 1.21860 0.94833 0.84509 0.98647 1.22046 0.91750 1.00614 0.97554 1.22540 0.97683 1.00580 0.95745 1.22507 0.97093 0.96869 0.99693 1.22373 0.99410 0.97629 0.96781 1.22124 0.99741 0.95003 0.98450 1.20944 1.04798 0.91934 1.07799 0.89922 0.87483 0.85644 0.85193 0.73704 0.74471 0.90727 0.90696 0.89679 0.91846 0.91513 0.91097 0.91276 0.90740 0.91567 0.90525 0.90960 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.17 10.94 21.82 0.24 -42.93 16 2 C 0.04 1.92 5.16 85.25 0.44 2.36 16 3 Si 0.98 39.10 29.59 68.60 2.03 41.13 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.50 -28.18 9.05 23.46 0.21 -27.97 16 8 H 0.07 3.81 7.90 -2.91 -0.02 3.79 16 9 C 0.09 5.08 5.57 -21.31 -0.12 4.96 16 10 C -0.19 -10.23 8.69 22.75 0.20 -10.03 16 11 C -0.09 -4.06 10.02 22.20 0.22 -3.84 16 12 C -0.25 -10.52 9.97 22.59 0.23 -10.30 16 13 C 0.15 6.83 6.25 38.16 0.24 7.07 16 14 N -0.63 -23.51 5.32 -304.98 -1.62 -25.14 16 15 C 0.49 18.09 7.61 87.24 0.66 18.76 16 16 O -0.53 -22.44 14.22 -3.33 -0.05 -22.48 16 17 C 0.52 15.47 7.89 87.24 0.69 16.16 16 18 O -0.54 -17.23 16.48 -3.28 -0.05 -17.28 16 19 N -0.69 -15.63 5.39 -464.52 -2.50 -18.13 16 20 C 0.12 2.13 4.73 86.38 0.41 2.54 16 21 C -0.10 -1.31 2.97 -10.07 -0.03 -1.34 16 22 C -0.13 -1.71 6.05 31.70 0.19 -1.52 16 23 C -0.12 -1.37 6.91 31.91 0.22 -1.15 16 24 C -0.12 -1.23 6.83 31.67 0.22 -1.01 16 25 C -0.12 -1.20 6.46 31.32 0.20 -0.99 16 26 C -0.23 -12.36 8.39 22.86 0.19 -12.17 16 27 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 28 H 0.11 5.87 6.17 -2.91 -0.02 5.85 16 29 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 30 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.42 13.36 8.30 -92.71 -0.77 12.59 16 32 H 0.42 9.05 7.80 -92.71 -0.72 8.33 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.32 8.02 -2.39 -0.02 1.30 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 0.94 7.77 -2.39 -0.02 0.92 16 37 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.72 7.67 -2.39 -0.02 0.71 16 44 H 0.09 4.96 6.48 -2.91 -0.02 4.94 16 Total: -1.00 -65.77 365.44 1.75 -64.02 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -0.46 Total: 39.29 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 4.17 Total: -18.47 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -3.89 Total: -86.20 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.10 Total: -39.77 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -65.77 1.75 -64.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453598300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.147 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds