Wall clock time and date at job start Tue Mar 31 2020 10:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00579 * 2 1 4 4 H 1.48504 * 109.46967 * 270.00185 * 3 2 1 5 5 H 1.48505 * 109.46883 * 29.99558 * 3 2 1 6 6 H 1.48490 * 109.47385 * 149.99928 * 3 2 1 7 7 C 1.38720 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00067 * 359.97438 * 7 2 1 9 9 O 1.34787 * 119.99942 * 180.02562 * 7 2 1 10 10 C 1.35570 * 117.00006 * 185.06052 * 9 7 2 11 11 C 1.39176 * 119.89924 * 354.35347 * 10 9 7 12 12 C 1.37593 * 120.10152 * 180.02562 * 11 10 9 13 13 C 1.40026 * 119.89913 * 0.02562 * 12 11 10 14 14 C 1.46959 * 120.10082 * 180.02562 * 13 12 11 15 15 C 1.35024 * 120.00337 * 136.67593 * 14 13 12 16 16 C 1.46259 * 119.99696 * 348.68453 * 15 14 13 17 17 O 1.21725 * 120.00070 * 353.20351 * 16 15 14 18 18 N 1.34771 * 119.99947 * 173.21433 * 16 15 14 19 19 C 1.46495 * 120.00116 * 179.97438 * 18 16 15 20 20 C 1.53120 * 109.52423 * 204.99986 * 19 18 16 21 21 C 1.53044 * 109.27994 * 182.44019 * 20 19 18 22 22 N 1.46847 * 109.52088 * 59.17486 * 21 20 19 23 23 C 1.46845 * 111.20270 * 298.26220 * 22 21 20 24 24 C 1.53035 * 109.52386 * 61.73823 * 23 22 21 25 25 C 1.40025 * 119.79672 * 0.27070 * 13 12 11 26 26 C 1.37595 * 119.89361 * 359.42928 * 25 13 12 27 27 H 0.97007 * 119.99178 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.94917 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.05427 * 180.02562 * 12 11 10 30 30 H 1.07994 * 119.99702 * 316.67009 * 14 13 12 31 31 H 1.07995 * 120.00232 * 168.68163 * 15 14 13 32 32 H 0.96997 * 120.00114 * 359.97438 * 18 16 15 33 33 H 1.09007 * 109.52454 * 325.12656 * 19 18 16 34 34 H 1.08997 * 109.50712 * 62.50156 * 20 19 18 35 35 H 1.08996 * 109.50651 * 302.37966 * 20 19 18 36 36 H 1.09000 * 109.45830 * 299.16600 * 21 20 19 37 37 H 1.09000 * 109.46487 * 179.19568 * 21 20 19 38 38 H 1.00904 * 110.99640 * 62.35770 * 22 21 20 39 39 H 1.09004 * 109.46050 * 181.75906 * 23 22 21 40 40 H 1.08997 * 109.46001 * 301.72324 * 23 22 21 41 41 H 1.08995 * 109.50276 * 180.87799 * 24 23 22 42 42 H 1.08998 * 109.50154 * 60.76722 * 24 23 22 43 43 H 1.07993 * 120.04920 * 179.72850 * 25 13 12 44 44 H 1.08005 * 119.94746 * 180.27510 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0086 -1.2014 -0.0005 8 1 1.4685 -2.1367 -0.0005 9 8 3.3564 -1.2015 0.0000 10 6 3.9719 -2.4047 -0.1071 11 6 3.2169 -3.5738 -0.0926 12 6 3.8373 -4.7972 -0.2005 13 6 5.2304 -4.8649 -0.3245 14 6 5.8975 -6.1692 -0.4407 15 6 6.8890 -6.3427 -1.3407 16 6 7.1346 -5.3261 -2.3631 17 8 6.3712 -4.3856 -2.4820 18 7 8.2062 -5.4309 -3.1737 19 6 8.4520 -4.4129 -4.1981 20 6 9.2793 -5.0200 -5.3346 21 6 9.5845 -3.9368 -6.3719 22 7 10.3256 -2.8413 -5.7338 23 6 9.5321 -2.2120 -4.6704 24 6 9.2254 -3.2437 -3.5825 25 6 5.9863 -3.6863 -0.3325 26 6 5.3567 -2.4671 -0.2302 27 1 -0.4849 0.8402 -0.0004 28 1 2.1425 -3.5208 0.0044 29 1 3.2507 -5.7040 -0.1895 30 1 5.5947 -6.9889 0.1939 31 1 7.5006 -7.2321 -1.3055 32 1 8.8147 -6.1802 -3.0788 33 1 7.5005 -4.0547 -4.5914 34 1 8.7157 -5.8257 -5.8050 35 1 10.2135 -5.4140 -4.9344 36 1 8.6503 -3.5529 -6.7816 37 1 10.1856 -4.3624 -7.1753 38 1 11.2137 -3.1637 -5.3797 39 1 10.0953 -1.3848 -4.2383 40 1 8.5982 -1.8362 -5.0882 41 1 8.6233 -2.7803 -2.8010 42 1 10.1587 -3.6097 -3.1547 43 1 7.0613 -3.7339 -0.4235 44 1 5.9386 -1.5573 -0.2407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493650931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:14 Heat of formation + Delta-G solvation = -12.031961 kcal Electronic energy + Delta-G solvation = -25959.437839 eV Core-core repulsion = 22263.881942 eV Total energy + Delta-G solvation = -3695.555898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.18479 -39.13388 -38.40238 -36.60351 -34.46473 -33.10499 -32.29787 -31.16073 -30.47366 -30.21792 -28.13022 -25.44716 -24.23812 -23.24948 -22.50019 -21.92208 -20.90463 -20.74024 -19.22153 -17.83518 -17.42830 -16.86503 -16.69436 -15.66590 -14.99127 -14.88355 -14.81147 -14.63342 -14.40063 -14.05395 -13.83269 -13.62563 -13.60833 -13.32146 -13.04875 -12.70688 -12.58509 -12.54309 -12.26584 -12.10541 -12.07234 -11.57308 -11.46732 -11.02811 -10.95680 -10.81828 -10.76985 -10.66966 -10.14904 -9.58200 -9.48587 -9.22781 -9.04143 -8.76378 -8.71745 -8.02486 -6.98857 -6.42335 -4.06202 1.16025 2.32084 2.60711 3.21750 3.23145 3.27389 3.41563 3.55814 4.01155 4.24362 4.39240 4.57770 4.61282 4.75637 4.88570 4.89985 4.98782 5.05166 5.13959 5.14967 5.20450 5.29116 5.47262 5.51517 5.54372 5.65918 5.67907 5.74431 5.76279 5.88577 5.99192 6.17084 6.24703 6.35295 6.49190 6.50409 6.65688 6.69101 6.91379 7.04966 7.17090 7.30628 7.37567 7.60786 7.66754 7.84236 8.06049 8.47857 8.92917 9.57146 10.65044 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.003373 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.341249 B = 8298.511432 C = 9854.219334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.177 3.823 11 C -0.238 4.238 12 C -0.043 4.043 13 C -0.181 4.181 14 C 0.026 3.974 15 C -0.265 4.265 16 C 0.539 3.461 17 O -0.511 6.511 18 N -0.733 5.733 19 C 0.148 3.852 20 C -0.164 4.164 21 C 0.060 3.940 22 N -0.686 5.686 23 C 0.058 3.942 24 C -0.166 4.166 25 C 0.011 3.989 26 C -0.202 4.202 27 H 0.280 0.720 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.393 0.607 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.339 0.661 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.507 -12.655 -7.332 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.463 4.463 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.124 3.876 11 C -0.257 4.257 12 C -0.062 4.062 13 C -0.182 4.182 14 C 0.006 3.994 15 C -0.287 4.287 16 C 0.329 3.671 17 O -0.387 6.387 18 N -0.385 5.385 19 C 0.043 3.957 20 C -0.204 4.204 21 C -0.071 4.071 22 N -0.314 5.314 23 C -0.072 4.072 24 C -0.207 4.207 25 C -0.008 4.008 26 C -0.222 4.222 27 H 0.090 0.910 28 H 0.150 0.850 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.227 0.773 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.156 0.844 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.619 -11.094 -7.890 23.879 hybrid contribution 0.483 -0.634 0.712 1.069 sum 20.102 -11.728 -7.177 24.354 Atomic orbital electron populations 1.69629 1.05625 1.28560 1.47628 1.24491 0.95034 0.98874 0.95593 0.86182 0.80352 0.81346 0.79062 1.19796 1.20731 1.18309 1.20834 0.76897 0.96708 1.51893 0.87467 1.83505 1.22687 1.26246 1.79232 1.19263 0.91611 0.85250 0.91458 1.21069 1.00922 0.91792 1.11895 1.20796 0.92901 0.96704 0.95763 1.18351 0.93384 0.91980 1.14501 1.22354 0.90098 0.95090 0.91816 1.22628 1.04713 1.01297 1.00015 1.18516 0.80474 0.86098 0.82018 1.90993 1.45308 1.32623 1.69766 1.46075 1.28204 1.27734 1.36517 1.20865 0.99186 0.88153 0.87502 1.22570 1.00368 1.00048 0.97394 1.22002 0.99409 0.89819 0.95825 1.60633 1.06567 1.31571 1.32676 1.22028 0.98756 0.96184 0.90266 1.22660 1.00601 0.97334 1.00098 1.20419 0.97459 0.90818 0.92082 1.19990 0.91756 0.97684 1.12749 0.90991 0.85026 0.87331 0.85928 0.86156 0.77325 0.89313 0.90812 0.91636 0.90474 0.90333 0.84367 0.90353 0.90401 0.90401 0.92115 0.88026 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.48 0.77 -24.87 16 2 C 0.06 1.82 5.49 -17.51 -0.10 1.72 16 3 Si 0.91 22.08 28.62 -169.99 -4.86 17.21 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.39 -11.19 9.94 30.91 0.31 -10.89 16 8 H 0.11 3.15 5.41 -52.48 -0.28 2.87 16 9 O -0.21 -5.81 8.57 0.72 0.01 -5.81 16 10 C 0.18 4.32 6.66 -38.89 -0.26 4.06 16 11 C -0.24 -5.39 9.14 -39.47 -0.36 -5.75 16 12 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 13 C -0.18 -3.24 4.54 -105.03 -0.48 -3.71 16 14 C 0.03 0.35 9.80 -37.19 -0.36 -0.01 16 15 C -0.27 -3.18 9.90 -37.50 -0.37 -3.55 16 16 C 0.54 7.51 6.74 -13.04 -0.09 7.42 16 17 O -0.51 -9.47 11.84 5.17 0.06 -9.41 16 18 N -0.73 -7.49 5.08 -55.13 -0.28 -7.77 16 19 C 0.15 1.50 2.52 -67.81 -0.17 1.33 16 20 C -0.16 -1.17 5.55 -26.65 -0.15 -1.32 16 21 C 0.06 0.44 6.55 -3.83 -0.03 0.41 16 22 N -0.69 -5.52 6.87 -113.81 -0.78 -6.31 16 23 C 0.06 0.53 6.55 -3.84 -0.03 0.51 16 24 C -0.17 -1.66 5.66 -26.65 -0.15 -1.81 16 25 C 0.01 0.20 6.59 -39.15 -0.26 -0.05 16 26 C -0.20 -4.37 9.97 -39.47 -0.39 -4.77 16 27 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.13 3.10 5.62 -52.48 -0.29 2.81 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.39 2.86 8.58 -40.82 -0.35 2.51 16 33 H 0.09 1.17 7.58 -51.92 -0.39 0.78 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.34 2.24 8.86 -39.29 -0.35 1.89 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 1.75 7.02 -52.49 -0.37 1.38 16 44 H 0.11 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -32.48 360.41 -9.16 -41.64 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.25 Total: 7.50 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -3.26 Total: -17.63 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.29 Total: -38.95 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.07 Total: -15.22 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.48 -9.16 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493650931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.610 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds