Wall clock time and date at job start Tue Mar 31 2020 10:59:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31506 * 1
3 3 Si 1.86799 * 120.00579 * 2 1
4 4 H 1.48504 * 109.46967 * 270.00185 * 3 2 1
5 5 H 1.48505 * 109.46883 * 29.99558 * 3 2 1
6 6 H 1.48490 * 109.47385 * 149.99928 * 3 2 1
7 7 C 1.38720 * 119.99501 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00067 * 359.97438 * 7 2 1
9 9 O 1.34787 * 119.99942 * 180.02562 * 7 2 1
10 10 C 1.35570 * 117.00006 * 185.06052 * 9 7 2
11 11 C 1.39176 * 119.89924 * 354.35347 * 10 9 7
12 12 C 1.37593 * 120.10152 * 180.02562 * 11 10 9
13 13 C 1.40026 * 119.89913 * 0.02562 * 12 11 10
14 14 C 1.46959 * 120.10082 * 180.02562 * 13 12 11
15 15 C 1.35024 * 120.00337 * 136.67593 * 14 13 12
16 16 C 1.46259 * 119.99696 * 348.68453 * 15 14 13
17 17 O 1.21725 * 120.00070 * 353.20351 * 16 15 14
18 18 N 1.34771 * 119.99947 * 173.21433 * 16 15 14
19 19 C 1.46495 * 120.00116 * 179.97438 * 18 16 15
20 20 C 1.53120 * 109.52423 * 204.99986 * 19 18 16
21 21 C 1.53044 * 109.27994 * 182.44019 * 20 19 18
22 22 N 1.46847 * 109.52088 * 59.17486 * 21 20 19
23 23 C 1.46845 * 111.20270 * 298.26220 * 22 21 20
24 24 C 1.53035 * 109.52386 * 61.73823 * 23 22 21
25 25 C 1.40025 * 119.79672 * 0.27070 * 13 12 11
26 26 C 1.37595 * 119.89361 * 359.42928 * 25 13 12
27 27 H 0.97007 * 119.99178 * 0.02562 * 1 2 3
28 28 H 1.08007 * 119.94917 * 359.97438 * 11 10 9
29 29 H 1.07998 * 120.05427 * 180.02562 * 12 11 10
30 30 H 1.07994 * 119.99702 * 316.67009 * 14 13 12
31 31 H 1.07995 * 120.00232 * 168.68163 * 15 14 13
32 32 H 0.96997 * 120.00114 * 359.97438 * 18 16 15
33 33 H 1.09007 * 109.52454 * 325.12656 * 19 18 16
34 34 H 1.08997 * 109.50712 * 62.50156 * 20 19 18
35 35 H 1.08996 * 109.50651 * 302.37966 * 20 19 18
36 36 H 1.09000 * 109.45830 * 299.16600 * 21 20 19
37 37 H 1.09000 * 109.46487 * 179.19568 * 21 20 19
38 38 H 1.00904 * 110.99640 * 62.35770 * 22 21 20
39 39 H 1.09004 * 109.46050 * 181.75906 * 23 22 21
40 40 H 1.08997 * 109.46001 * 301.72324 * 23 22 21
41 41 H 1.08995 * 109.50276 * 180.87799 * 24 23 22
42 42 H 1.08998 * 109.50154 * 60.76722 * 24 23 22
43 43 H 1.07993 * 120.04920 * 179.72850 * 25 13 12
44 44 H 1.08005 * 119.94746 * 180.27510 * 26 25 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4400 0.7000
7 6 2.0086 -1.2014 -0.0005
8 1 1.4685 -2.1367 -0.0005
9 8 3.3564 -1.2015 0.0000
10 6 3.9719 -2.4047 -0.1071
11 6 3.2169 -3.5738 -0.0926
12 6 3.8373 -4.7972 -0.2005
13 6 5.2304 -4.8649 -0.3245
14 6 5.8975 -6.1692 -0.4407
15 6 6.8890 -6.3427 -1.3407
16 6 7.1346 -5.3261 -2.3631
17 8 6.3712 -4.3856 -2.4820
18 7 8.2062 -5.4309 -3.1737
19 6 8.4520 -4.4129 -4.1981
20 6 9.2793 -5.0200 -5.3346
21 6 9.5845 -3.9368 -6.3719
22 7 10.3256 -2.8413 -5.7338
23 6 9.5321 -2.2120 -4.6704
24 6 9.2254 -3.2437 -3.5825
25 6 5.9863 -3.6863 -0.3325
26 6 5.3567 -2.4671 -0.2302
27 1 -0.4849 0.8402 -0.0004
28 1 2.1425 -3.5208 0.0044
29 1 3.2507 -5.7040 -0.1895
30 1 5.5947 -6.9889 0.1939
31 1 7.5006 -7.2321 -1.3055
32 1 8.8147 -6.1802 -3.0788
33 1 7.5005 -4.0547 -4.5914
34 1 8.7157 -5.8257 -5.8050
35 1 10.2135 -5.4140 -4.9344
36 1 8.6503 -3.5529 -6.7816
37 1 10.1856 -4.3624 -7.1753
38 1 11.2137 -3.1637 -5.3797
39 1 10.0953 -1.3848 -4.2383
40 1 8.5982 -1.8362 -5.0882
41 1 8.6233 -2.7803 -2.8010
42 1 10.1587 -3.6097 -3.1547
43 1 7.0613 -3.7339 -0.4235
44 1 5.9386 -1.5573 -0.2407
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000493650931.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:59:14
Heat of formation + Delta-G solvation = -12.031961 kcal
Electronic energy + Delta-G solvation = -25959.437839 eV
Core-core repulsion = 22263.881942 eV
Total energy + Delta-G solvation = -3695.555898 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.18479 -39.13388 -38.40238 -36.60351 -34.46473 -33.10499 -32.29787 -31.16073
-30.47366 -30.21792 -28.13022 -25.44716 -24.23812 -23.24948 -22.50019 -21.92208
-20.90463 -20.74024 -19.22153 -17.83518 -17.42830 -16.86503 -16.69436 -15.66590
-14.99127 -14.88355 -14.81147 -14.63342 -14.40063 -14.05395 -13.83269 -13.62563
-13.60833 -13.32146 -13.04875 -12.70688 -12.58509 -12.54309 -12.26584 -12.10541
-12.07234 -11.57308 -11.46732 -11.02811 -10.95680 -10.81828 -10.76985 -10.66966
-10.14904 -9.58200 -9.48587 -9.22781 -9.04143 -8.76378 -8.71745 -8.02486
-6.98857 -6.42335 -4.06202 1.16025 2.32084 2.60711 3.21750 3.23145
3.27389 3.41563 3.55814 4.01155 4.24362 4.39240 4.57770 4.61282
4.75637 4.88570 4.89985 4.98782 5.05166 5.13959 5.14967 5.20450
5.29116 5.47262 5.51517 5.54372 5.65918 5.67907 5.74431 5.76279
5.88577 5.99192 6.17084 6.24703 6.35295 6.49190 6.50409 6.65688
6.69101 6.91379 7.04966 7.17090 7.30628 7.37567 7.60786 7.66754
7.84236 8.06049 8.47857 8.92917 9.57146 10.65044
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.013528 B = 0.003373 C = 0.002841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2069.341249 B = 8298.511432 C = 9854.219334
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.877 5.877
2 C 0.064 3.936
3 Si 0.905 3.095
4 H -0.273 1.273
5 H -0.282 1.282
6 H -0.259 1.259
7 C -0.388 4.388
8 H 0.108 0.892
9 O -0.213 6.213
10 C 0.177 3.823
11 C -0.238 4.238
12 C -0.043 4.043
13 C -0.181 4.181
14 C 0.026 3.974
15 C -0.265 4.265
16 C 0.539 3.461
17 O -0.511 6.511
18 N -0.733 5.733
19 C 0.148 3.852
20 C -0.164 4.164
21 C 0.060 3.940
22 N -0.686 5.686
23 C 0.058 3.942
24 C -0.166 4.166
25 C 0.011 3.989
26 C -0.202 4.202
27 H 0.280 0.720
28 H 0.132 0.868
29 H 0.109 0.891
30 H 0.123 0.877
31 H 0.121 0.879
32 H 0.393 0.607
33 H 0.089 0.911
34 H 0.073 0.927
35 H 0.065 0.935
36 H 0.077 0.923
37 H 0.078 0.922
38 H 0.339 0.661
39 H 0.078 0.922
40 H 0.077 0.923
41 H 0.077 0.923
42 H 0.060 0.940
43 H 0.102 0.898
44 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.507 -12.655 -7.332 25.188
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.514 5.514
2 C -0.140 4.140
3 Si 0.731 3.269
4 H -0.198 1.198
5 H -0.207 1.207
6 H -0.183 1.183
7 C -0.463 4.463
8 H 0.125 0.875
9 O -0.117 6.117
10 C 0.124 3.876
11 C -0.257 4.257
12 C -0.062 4.062
13 C -0.182 4.182
14 C 0.006 3.994
15 C -0.287 4.287
16 C 0.329 3.671
17 O -0.387 6.387
18 N -0.385 5.385
19 C 0.043 3.957
20 C -0.204 4.204
21 C -0.071 4.071
22 N -0.314 5.314
23 C -0.072 4.072
24 C -0.207 4.207
25 C -0.008 4.008
26 C -0.222 4.222
27 H 0.090 0.910
28 H 0.150 0.850
29 H 0.127 0.873
30 H 0.141 0.859
31 H 0.138 0.862
32 H 0.227 0.773
33 H 0.107 0.893
34 H 0.092 0.908
35 H 0.084 0.916
36 H 0.095 0.905
37 H 0.097 0.903
38 H 0.156 0.844
39 H 0.096 0.904
40 H 0.096 0.904
41 H 0.096 0.904
42 H 0.079 0.921
43 H 0.120 0.880
44 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges 19.619 -11.094 -7.890 23.879
hybrid contribution 0.483 -0.634 0.712 1.069
sum 20.102 -11.728 -7.177 24.354
Atomic orbital electron populations
1.69629 1.05625 1.28560 1.47628 1.24491 0.95034 0.98874 0.95593
0.86182 0.80352 0.81346 0.79062 1.19796 1.20731 1.18309 1.20834
0.76897 0.96708 1.51893 0.87467 1.83505 1.22687 1.26246 1.79232
1.19263 0.91611 0.85250 0.91458 1.21069 1.00922 0.91792 1.11895
1.20796 0.92901 0.96704 0.95763 1.18351 0.93384 0.91980 1.14501
1.22354 0.90098 0.95090 0.91816 1.22628 1.04713 1.01297 1.00015
1.18516 0.80474 0.86098 0.82018 1.90993 1.45308 1.32623 1.69766
1.46075 1.28204 1.27734 1.36517 1.20865 0.99186 0.88153 0.87502
1.22570 1.00368 1.00048 0.97394 1.22002 0.99409 0.89819 0.95825
1.60633 1.06567 1.31571 1.32676 1.22028 0.98756 0.96184 0.90266
1.22660 1.00601 0.97334 1.00098 1.20419 0.97459 0.90818 0.92082
1.19990 0.91756 0.97684 1.12749 0.90991 0.85026 0.87331 0.85928
0.86156 0.77325 0.89313 0.90812 0.91636 0.90474 0.90333 0.84367
0.90353 0.90401 0.90401 0.92115 0.88026 0.86882
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.64 13.96 55.48 0.77 -24.87 16
2 C 0.06 1.82 5.49 -17.51 -0.10 1.72 16
3 Si 0.91 22.08 28.62 -169.99 -4.86 17.21 16
4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
6 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16
7 C -0.39 -11.19 9.94 30.91 0.31 -10.89 16
8 H 0.11 3.15 5.41 -52.48 -0.28 2.87 16
9 O -0.21 -5.81 8.57 0.72 0.01 -5.81 16
10 C 0.18 4.32 6.66 -38.89 -0.26 4.06 16
11 C -0.24 -5.39 9.14 -39.47 -0.36 -5.75 16
12 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16
13 C -0.18 -3.24 4.54 -105.03 -0.48 -3.71 16
14 C 0.03 0.35 9.80 -37.19 -0.36 -0.01 16
15 C -0.27 -3.18 9.90 -37.50 -0.37 -3.55 16
16 C 0.54 7.51 6.74 -13.04 -0.09 7.42 16
17 O -0.51 -9.47 11.84 5.17 0.06 -9.41 16
18 N -0.73 -7.49 5.08 -55.13 -0.28 -7.77 16
19 C 0.15 1.50 2.52 -67.81 -0.17 1.33 16
20 C -0.16 -1.17 5.55 -26.65 -0.15 -1.32 16
21 C 0.06 0.44 6.55 -3.83 -0.03 0.41 16
22 N -0.69 -5.52 6.87 -113.81 -0.78 -6.31 16
23 C 0.06 0.53 6.55 -3.84 -0.03 0.51 16
24 C -0.17 -1.66 5.66 -26.65 -0.15 -1.81 16
25 C 0.01 0.20 6.59 -39.15 -0.26 -0.05 16
26 C -0.20 -4.37 9.97 -39.47 -0.39 -4.77 16
27 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16
28 H 0.13 3.10 5.62 -52.48 -0.29 2.81 16
29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16
30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16
31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16
32 H 0.39 2.86 8.58 -40.82 -0.35 2.51 16
33 H 0.09 1.17 7.58 -51.92 -0.39 0.78 16
34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
38 H 0.34 2.24 8.86 -39.29 -0.35 1.89 16
39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
43 H 0.10 1.75 7.02 -52.49 -0.37 1.38 16
44 H 0.11 2.31 8.06 -52.48 -0.42 1.89 16
LS Contribution 360.41 15.07 5.43 5.43
Total: -1.00 -32.48 360.41 -9.16 -41.64
By element:
Atomic # 1 Polarization: 13.75 SS G_CDS: -6.25 Total: 7.50 kcal
Atomic # 6 Polarization: -14.36 SS G_CDS: -3.26 Total: -17.63 kcal
Atomic # 7 Polarization: -38.66 SS G_CDS: -0.29 Total: -38.95 kcal
Atomic # 8 Polarization: -15.28 SS G_CDS: 0.07 Total: -15.22 kcal
Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.21 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -32.48 -9.16 -41.64 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000493650931.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.610 kcal
(2) G-P(sol) polarization free energy of solvation -32.477 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds