Wall clock time and date at job start Tue Mar 31 2020 11:30:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30823 * 1
3 3 Si 1.86803 * 120.00144 * 2 1
4 4 H 1.48498 * 109.47179 * 240.00022 * 3 2 1
5 5 H 1.48500 * 109.46840 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.46500 * 120.00053 * 3 2 1
7 7 C 1.39952 * 119.99935 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99617 * 165.40730 * 7 2 1
9 9 C 1.41389 * 120.00046 * 345.67769 * 7 2 1
10 10 C 1.40715 * 120.24607 * 154.51697 * 9 7 2
11 11 C 1.37623 * 119.74422 * 179.74048 * 10 9 7
12 12 C 1.38627 * 120.24749 * 0.53963 * 11 10 9
13 13 C 1.50699 * 119.74932 * 179.69474 * 12 11 10
14 14 N 1.46502 * 109.47086 * 270.01849 * 13 12 11
15 15 C 1.34780 * 120.00027 * 179.97438 * 14 13 12
16 16 O 1.21283 * 120.00042 * 0.02562 * 15 14 13
17 17 C 1.50697 * 119.99882 * 179.97438 * 15 14 13
18 18 H 1.08999 * 109.60447 * 264.21561 * 17 15 14
19 19 C 1.52989 * 109.60152 * 143.88795 * 17 15 14
20 20 C 1.51779 * 110.88048 * 326.71125 * 19 17 15
21 21 C 1.51791 * 113.80730 * 292.99960 * 20 19 17
22 22 C 1.53057 * 110.74735 * 66.81646 * 21 20 19
23 23 C 1.51424 * 108.49415 * 275.07774 * 22 21 20
24 24 O 1.21278 * 119.89163 * 251.24560 * 23 22 21
25 25 N 1.33632 * 120.27915 * 71.34954 * 23 22 21
26 26 C 1.38637 * 120.50338 * 359.71510 * 12 11 10
27 27 C 1.37613 * 120.24693 * 0.02562 * 26 12 11
28 28 H 0.97001 * 119.99592 * 359.97438 * 1 2 3
29 29 H 1.08001 * 120.12351 * 359.97438 * 10 9 7
30 30 H 1.07994 * 119.87295 * 180.27267 * 11 10 9
31 31 H 1.09003 * 109.47080 * 30.01956 * 13 12 11
32 32 H 1.09007 * 109.47466 * 150.01819 * 13 12 11
33 33 H 0.96993 * 119.99972 * 359.97438 * 14 13 12
34 34 H 1.09004 * 109.19770 * 87.06802 * 19 17 15
35 35 H 1.09000 * 109.20138 * 206.39328 * 19 17 15
36 36 H 1.08998 * 108.62006 * 54.12384 * 20 19 17
37 37 H 1.09000 * 108.61722 * 171.88458 * 20 19 17
38 38 H 1.09005 * 109.22496 * 187.14175 * 21 20 19
39 39 H 1.08997 * 109.22777 * 306.53357 * 21 20 19
40 40 H 1.09008 * 109.63398 * 34.77791 * 22 21 20
41 41 H 1.09004 * 109.63748 * 155.17518 * 22 21 20
42 42 H 0.97004 * 119.96349 * 180.31518 * 25 23 22
43 43 H 1.08002 * 119.87562 * 180.02562 * 26 12 11
44 44 H 1.08010 * 120.12916 * 179.97438 * 27 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.0960 1.6964 -1.2125
5 1 1.2773 2.7464 0.0006
6 1 3.0960 1.6962 1.2126
7 6 2.0080 -1.2120 -0.0005
8 1 3.0619 -1.2269 -0.2362
9 6 1.3340 -2.4176 0.3018
10 6 1.8196 -3.6436 -0.1894
11 6 1.1585 -4.8114 0.1158
12 6 0.0119 -4.7818 0.8945
13 6 -0.7070 -6.0666 1.2160
14 7 -1.7088 -6.3376 0.1819
15 6 -2.4777 -7.4417 0.2614
16 8 -2.3406 -8.2107 1.1892
17 6 -3.5086 -7.7201 -0.8020
18 1 -4.4808 -7.3520 -0.4741
19 6 -3.5892 -9.2264 -1.0568
20 6 -2.2305 -9.8788 -0.8778
21 6 -1.2093 -9.4639 -1.9213
22 6 -0.8500 -7.9838 -1.7697
23 6 -1.8756 -7.1612 -2.5209
24 8 -1.5646 -6.6014 -3.5509
25 7 -3.1220 -7.0474 -2.0528
26 6 -0.4786 -3.5792 1.3793
27 6 0.1692 -2.3997 1.0913
28 1 -0.4849 0.8401 0.0004
29 1 2.7099 -3.6683 -0.8003
30 1 1.5319 -5.7539 -0.2564
31 1 0.0110 -6.8861 1.2499
32 1 -1.1997 -5.9750 2.1840
33 1 -1.8187 -5.7224 -0.5599
34 1 -4.2955 -9.6712 -0.3557
35 1 -3.9378 -9.3996 -2.0749
36 1 -1.8463 -9.6178 0.1083
37 1 -2.3552 -10.9607 -0.9239
38 1 -0.3086 -10.0659 -1.8012
39 1 -1.6233 -9.6319 -2.9154
40 1 -0.8624 -7.7100 -0.7146
41 1 0.1424 -7.8036 -2.1831
42 1 -3.7766 -6.5230 -2.5401
43 1 -1.3724 -3.5679 1.9854
44 1 -0.2148 -1.4638 1.4697
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000583631726.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:06
Heat of formation + Delta-G solvation = -44.458639 kcal
Electronic energy + Delta-G solvation = -26953.299601 eV
Core-core repulsion = 23256.337577 eV
Total energy + Delta-G solvation = -3696.962024 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.55414 -38.89479 -37.78886 -36.22337 -35.06588 -34.14796 -33.48341 -31.13030
-30.41125 -29.38373 -27.68168 -26.42151 -24.59842 -23.71221 -21.71540 -21.11887
-20.29373 -20.15467 -19.54241 -17.84357 -17.51409 -17.40891 -16.11580 -15.85891
-15.37761 -15.33265 -14.95268 -14.29561 -14.23361 -14.07361 -13.89485 -13.70376
-13.43726 -13.23284 -12.78046 -12.65685 -12.53840 -12.07592 -12.03580 -11.71783
-11.65696 -11.16209 -11.15896 -11.06794 -10.93485 -10.76697 -10.64640 -10.47923
-9.99747 -9.78066 -9.75215 -9.49648 -9.31083 -9.15997 -8.68437 -7.59491
-7.45642 -6.85124 -4.49014 2.46028 2.49070 2.62731 2.96566 3.00649
3.01554 3.04663 3.10844 3.47742 3.85130 4.38687 4.42548 4.51822
4.60094 4.74254 4.88954 5.01470 5.12560 5.38281 5.52418 5.57162
5.60376 5.71393 5.77469 5.81498 5.84638 5.96174 6.03597 6.12724
6.21041 6.29772 6.32359 6.62697 6.63909 6.85416 6.96339 7.03421
7.15884 7.25242 7.49120 7.56024 7.76928 7.94000 7.98062 8.15992
8.17065 8.19888 8.52649 8.77744 8.84788 10.07453
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.022790 B = 0.003233 C = 0.003133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1228.296625 B = 8658.237567 C = 8935.858651
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.790 5.790
2 C 0.074 3.926
3 Si 0.912 3.088
4 H -0.264 1.264
5 H -0.277 1.277
6 H -0.263 1.263
7 C -0.456 4.456
8 H 0.079 0.921
9 C 0.117 3.883
10 C -0.227 4.227
11 C -0.069 4.069
12 C -0.249 4.249
13 C 0.180 3.820
14 N -0.716 5.716
15 C 0.505 3.495
16 O -0.534 6.534
17 C 0.121 3.879
18 H 0.124 0.876
19 C -0.114 4.114
20 C -0.155 4.155
21 C -0.108 4.108
22 C -0.179 4.179
23 C 0.522 3.478
24 O -0.538 6.538
25 N -0.726 5.726
26 C -0.082 4.082
27 C -0.167 4.167
28 H 0.282 0.718
29 H 0.093 0.907
30 H 0.088 0.912
31 H 0.061 0.939
32 H 0.062 0.938
33 H 0.404 0.596
34 H 0.083 0.917
35 H 0.075 0.925
36 H 0.102 0.898
37 H 0.064 0.936
38 H 0.074 0.926
39 H 0.060 0.940
40 H 0.122 0.878
41 H 0.098 0.902
42 H 0.405 0.595
43 H 0.087 0.913
44 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.700 -13.125 -0.841 15.240
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.415 5.415
2 C -0.144 4.144
3 Si 0.736 3.264
4 H -0.189 1.189
5 H -0.202 1.202
6 H -0.187 1.187
7 C -0.485 4.485
8 H 0.097 0.903
9 C 0.114 3.886
10 C -0.246 4.246
11 C -0.088 4.088
12 C -0.251 4.251
13 C 0.059 3.941
14 N -0.369 5.369
15 C 0.291 3.709
16 O -0.412 6.412
17 C 0.012 3.988
18 H 0.142 0.858
19 C -0.153 4.153
20 C -0.192 4.192
21 C -0.146 4.146
22 C -0.220 4.220
23 C 0.310 3.690
24 O -0.414 6.414
25 N -0.382 5.382
26 C -0.101 4.101
27 C -0.187 4.187
28 H 0.093 0.907
29 H 0.112 0.888
30 H 0.106 0.894
31 H 0.080 0.920
32 H 0.080 0.920
33 H 0.240 0.760
34 H 0.102 0.898
35 H 0.093 0.907
36 H 0.120 0.880
37 H 0.083 0.917
38 H 0.093 0.907
39 H 0.079 0.921
40 H 0.139 0.861
41 H 0.116 0.884
42 H 0.242 0.758
43 H 0.105 0.895
44 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -7.468 -13.308 -0.607 15.272
hybrid contribution -0.109 1.367 -0.680 1.530
sum -7.577 -11.941 -1.287 14.201
Atomic orbital electron populations
1.69792 1.07591 1.29458 1.34689 1.25955 0.94822 1.01492 0.92156
0.86300 0.80089 0.79920 0.80067 1.18897 1.20242 1.18744 1.19657
0.97097 0.90898 1.40892 0.90313 1.17681 0.91159 0.92064 0.87696
1.20999 1.03435 0.92983 1.07218 1.20387 0.94894 0.96502 0.96969
1.18942 1.01065 0.92760 1.12310 1.20048 0.88768 0.95698 0.89551
1.47028 1.37052 1.24206 1.28583 1.20481 0.81980 0.81715 0.86699
1.90644 1.69153 1.46837 1.34592 1.21594 0.98913 0.95118 0.83125
0.85841 1.21544 0.98945 0.92056 1.02746 1.21636 0.94569 1.00559
1.02408 1.21182 0.99778 0.94158 0.99498 1.22832 0.98702 0.95471
1.04946 1.20732 0.83041 0.80175 0.85083 1.90775 1.79208 1.46871
1.24558 1.46075 1.13031 1.53683 1.25445 1.20552 0.97929 0.92653
0.99008 1.21385 0.98887 0.96739 1.01662 0.90674 0.88843 0.89395
0.92043 0.91962 0.75973 0.89824 0.90670 0.88002 0.91719 0.90725
0.92142 0.86065 0.88390 0.75809 0.89454 0.86029
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -19.78 10.80 55.55 0.60 -19.18 16
2 C 0.07 1.80 5.21 -17.34 -0.09 1.71 16
3 Si 0.91 18.18 29.58 -169.99 -5.03 13.15 16
4 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16
5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16
6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16
7 C -0.46 -11.76 9.07 -37.74 -0.34 -12.10 16
8 H 0.08 1.95 7.89 -52.49 -0.41 1.53 16
9 C 0.12 3.00 5.58 -106.83 -0.60 2.41 16
10 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16
11 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16
12 C -0.25 -4.99 5.27 -104.33 -0.55 -5.54 16
13 C 0.18 2.99 5.51 -5.19 -0.03 2.96 16
14 N -0.72 -10.47 3.51 -61.47 -0.22 -10.69 16
15 C 0.51 6.60 4.19 -10.99 -0.05 6.56 16
16 O -0.53 -8.12 14.09 5.56 0.08 -8.05 16
17 C 0.12 1.17 3.79 -68.71 -0.26 0.91 16
18 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16
19 C -0.11 -0.99 5.34 -27.36 -0.15 -1.13 16
20 C -0.15 -1.55 5.16 -27.96 -0.14 -1.70 16
21 C -0.11 -1.16 5.67 -27.32 -0.15 -1.31 16
22 C -0.18 -2.35 5.34 -27.50 -0.15 -2.50 16
23 C 0.52 7.47 5.60 -11.14 -0.06 7.40 16
24 O -0.54 -9.99 17.92 5.56 0.10 -9.89 16
25 N -0.73 -7.81 4.61 -54.51 -0.25 -8.07 16
26 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16
27 C -0.17 -4.15 8.69 -38.87 -0.34 -4.49 16
28 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16
29 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16
30 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16
31 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16
32 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16
33 H 0.40 6.23 6.68 -40.82 -0.27 5.96 16
34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16
35 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16
36 H 0.10 1.26 4.77 -51.93 -0.25 1.01 16
37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.06 0.64 7.86 -51.93 -0.41 0.23 16
40 H 0.12 1.68 3.05 -51.92 -0.16 1.52 16
41 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16
42 H 0.40 3.73 8.92 -40.82 -0.36 3.37 16
43 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16
44 H 0.12 3.13 6.08 -52.48 -0.32 2.82 16
LS Contribution 347.91 15.07 5.24 5.24
Total: -1.00 -29.05 347.91 -9.48 -38.53
By element:
Atomic # 1 Polarization: 21.49 SS G_CDS: -5.95 Total: 15.54 kcal
Atomic # 6 Polarization: -12.55 SS G_CDS: -4.05 Total: -16.60 kcal
Atomic # 7 Polarization: -38.07 SS G_CDS: 0.13 Total: -37.93 kcal
Atomic # 8 Polarization: -18.11 SS G_CDS: 0.18 Total: -17.93 kcal
Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -29.05 -9.48 -38.53 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000583631726.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.930 kcal
(2) G-P(sol) polarization free energy of solvation -29.048 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.978 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.459 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds