Wall clock time and date at job start Tue Mar 31 2020 11:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 120.00144 * 2 1 4 4 H 1.48498 * 109.47179 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.46840 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46500 * 120.00053 * 3 2 1 7 7 C 1.39952 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99617 * 165.40730 * 7 2 1 9 9 C 1.41389 * 120.00046 * 345.67769 * 7 2 1 10 10 C 1.40715 * 120.24607 * 154.51697 * 9 7 2 11 11 C 1.37623 * 119.74422 * 179.74048 * 10 9 7 12 12 C 1.38627 * 120.24749 * 0.53963 * 11 10 9 13 13 C 1.50699 * 119.74932 * 179.69474 * 12 11 10 14 14 N 1.46502 * 109.47086 * 270.01849 * 13 12 11 15 15 C 1.34780 * 120.00027 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99882 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.60447 * 264.21561 * 17 15 14 19 19 C 1.52989 * 109.60152 * 143.88795 * 17 15 14 20 20 C 1.51779 * 110.88048 * 326.71125 * 19 17 15 21 21 C 1.51791 * 113.80730 * 292.99960 * 20 19 17 22 22 C 1.53057 * 110.74735 * 66.81646 * 21 20 19 23 23 C 1.51424 * 108.49415 * 275.07774 * 22 21 20 24 24 O 1.21278 * 119.89163 * 251.24560 * 23 22 21 25 25 N 1.33632 * 120.27915 * 71.34954 * 23 22 21 26 26 C 1.38637 * 120.50338 * 359.71510 * 12 11 10 27 27 C 1.37613 * 120.24693 * 0.02562 * 26 12 11 28 28 H 0.97001 * 119.99592 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.12351 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.87295 * 180.27267 * 11 10 9 31 31 H 1.09003 * 109.47080 * 30.01956 * 13 12 11 32 32 H 1.09007 * 109.47466 * 150.01819 * 13 12 11 33 33 H 0.96993 * 119.99972 * 359.97438 * 14 13 12 34 34 H 1.09004 * 109.19770 * 87.06802 * 19 17 15 35 35 H 1.09000 * 109.20138 * 206.39328 * 19 17 15 36 36 H 1.08998 * 108.62006 * 54.12384 * 20 19 17 37 37 H 1.09000 * 108.61722 * 171.88458 * 20 19 17 38 38 H 1.09005 * 109.22496 * 187.14175 * 21 20 19 39 39 H 1.08997 * 109.22777 * 306.53357 * 21 20 19 40 40 H 1.09008 * 109.63398 * 34.77791 * 22 21 20 41 41 H 1.09004 * 109.63748 * 155.17518 * 22 21 20 42 42 H 0.97004 * 119.96349 * 180.31518 * 25 23 22 43 43 H 1.08002 * 119.87562 * 180.02562 * 26 12 11 44 44 H 1.08010 * 120.12916 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6962 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0619 -1.2269 -0.2362 9 6 1.3340 -2.4176 0.3018 10 6 1.8196 -3.6436 -0.1894 11 6 1.1585 -4.8114 0.1158 12 6 0.0119 -4.7818 0.8945 13 6 -0.7070 -6.0666 1.2160 14 7 -1.7088 -6.3376 0.1819 15 6 -2.4777 -7.4417 0.2614 16 8 -2.3406 -8.2107 1.1892 17 6 -3.5086 -7.7201 -0.8020 18 1 -4.4808 -7.3520 -0.4741 19 6 -3.5892 -9.2264 -1.0568 20 6 -2.2305 -9.8788 -0.8778 21 6 -1.2093 -9.4639 -1.9213 22 6 -0.8500 -7.9838 -1.7697 23 6 -1.8756 -7.1612 -2.5209 24 8 -1.5646 -6.6014 -3.5509 25 7 -3.1220 -7.0474 -2.0528 26 6 -0.4786 -3.5792 1.3793 27 6 0.1692 -2.3997 1.0913 28 1 -0.4849 0.8401 0.0004 29 1 2.7099 -3.6683 -0.8003 30 1 1.5319 -5.7539 -0.2564 31 1 0.0110 -6.8861 1.2499 32 1 -1.1997 -5.9750 2.1840 33 1 -1.8187 -5.7224 -0.5599 34 1 -4.2955 -9.6712 -0.3557 35 1 -3.9378 -9.3996 -2.0749 36 1 -1.8463 -9.6178 0.1083 37 1 -2.3552 -10.9607 -0.9239 38 1 -0.3086 -10.0659 -1.8012 39 1 -1.6233 -9.6319 -2.9154 40 1 -0.8624 -7.7100 -0.7146 41 1 0.1424 -7.8036 -2.1831 42 1 -3.7766 -6.5230 -2.5401 43 1 -1.3724 -3.5679 1.9854 44 1 -0.2148 -1.4638 1.4697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583631726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:06 Heat of formation + Delta-G solvation = -44.458639 kcal Electronic energy + Delta-G solvation = -26953.299601 eV Core-core repulsion = 23256.337577 eV Total energy + Delta-G solvation = -3696.962024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55414 -38.89479 -37.78886 -36.22337 -35.06588 -34.14796 -33.48341 -31.13030 -30.41125 -29.38373 -27.68168 -26.42151 -24.59842 -23.71221 -21.71540 -21.11887 -20.29373 -20.15467 -19.54241 -17.84357 -17.51409 -17.40891 -16.11580 -15.85891 -15.37761 -15.33265 -14.95268 -14.29561 -14.23361 -14.07361 -13.89485 -13.70376 -13.43726 -13.23284 -12.78046 -12.65685 -12.53840 -12.07592 -12.03580 -11.71783 -11.65696 -11.16209 -11.15896 -11.06794 -10.93485 -10.76697 -10.64640 -10.47923 -9.99747 -9.78066 -9.75215 -9.49648 -9.31083 -9.15997 -8.68437 -7.59491 -7.45642 -6.85124 -4.49014 2.46028 2.49070 2.62731 2.96566 3.00649 3.01554 3.04663 3.10844 3.47742 3.85130 4.38687 4.42548 4.51822 4.60094 4.74254 4.88954 5.01470 5.12560 5.38281 5.52418 5.57162 5.60376 5.71393 5.77469 5.81498 5.84638 5.96174 6.03597 6.12724 6.21041 6.29772 6.32359 6.62697 6.63909 6.85416 6.96339 7.03421 7.15884 7.25242 7.49120 7.56024 7.76928 7.94000 7.98062 8.15992 8.17065 8.19888 8.52649 8.77744 8.84788 10.07453 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.003233 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.296625 B = 8658.237567 C = 8935.858651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.227 4.227 11 C -0.069 4.069 12 C -0.249 4.249 13 C 0.180 3.820 14 N -0.716 5.716 15 C 0.505 3.495 16 O -0.534 6.534 17 C 0.121 3.879 18 H 0.124 0.876 19 C -0.114 4.114 20 C -0.155 4.155 21 C -0.108 4.108 22 C -0.179 4.179 23 C 0.522 3.478 24 O -0.538 6.538 25 N -0.726 5.726 26 C -0.082 4.082 27 C -0.167 4.167 28 H 0.282 0.718 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.404 0.596 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.405 0.595 43 H 0.087 0.913 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 -13.125 -0.841 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.246 4.246 11 C -0.088 4.088 12 C -0.251 4.251 13 C 0.059 3.941 14 N -0.369 5.369 15 C 0.291 3.709 16 O -0.412 6.412 17 C 0.012 3.988 18 H 0.142 0.858 19 C -0.153 4.153 20 C -0.192 4.192 21 C -0.146 4.146 22 C -0.220 4.220 23 C 0.310 3.690 24 O -0.414 6.414 25 N -0.382 5.382 26 C -0.101 4.101 27 C -0.187 4.187 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.240 0.760 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.116 0.884 42 H 0.242 0.758 43 H 0.105 0.895 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.468 -13.308 -0.607 15.272 hybrid contribution -0.109 1.367 -0.680 1.530 sum -7.577 -11.941 -1.287 14.201 Atomic orbital electron populations 1.69792 1.07591 1.29458 1.34689 1.25955 0.94822 1.01492 0.92156 0.86300 0.80089 0.79920 0.80067 1.18897 1.20242 1.18744 1.19657 0.97097 0.90898 1.40892 0.90313 1.17681 0.91159 0.92064 0.87696 1.20999 1.03435 0.92983 1.07218 1.20387 0.94894 0.96502 0.96969 1.18942 1.01065 0.92760 1.12310 1.20048 0.88768 0.95698 0.89551 1.47028 1.37052 1.24206 1.28583 1.20481 0.81980 0.81715 0.86699 1.90644 1.69153 1.46837 1.34592 1.21594 0.98913 0.95118 0.83125 0.85841 1.21544 0.98945 0.92056 1.02746 1.21636 0.94569 1.00559 1.02408 1.21182 0.99778 0.94158 0.99498 1.22832 0.98702 0.95471 1.04946 1.20732 0.83041 0.80175 0.85083 1.90775 1.79208 1.46871 1.24558 1.46075 1.13031 1.53683 1.25445 1.20552 0.97929 0.92653 0.99008 1.21385 0.98887 0.96739 1.01662 0.90674 0.88843 0.89395 0.92043 0.91962 0.75973 0.89824 0.90670 0.88002 0.91719 0.90725 0.92142 0.86065 0.88390 0.75809 0.89454 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.78 10.80 55.55 0.60 -19.18 16 2 C 0.07 1.80 5.21 -17.34 -0.09 1.71 16 3 Si 0.91 18.18 29.58 -169.99 -5.03 13.15 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.76 9.07 -37.74 -0.34 -12.10 16 8 H 0.08 1.95 7.89 -52.49 -0.41 1.53 16 9 C 0.12 3.00 5.58 -106.83 -0.60 2.41 16 10 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 11 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 12 C -0.25 -4.99 5.27 -104.33 -0.55 -5.54 16 13 C 0.18 2.99 5.51 -5.19 -0.03 2.96 16 14 N -0.72 -10.47 3.51 -61.47 -0.22 -10.69 16 15 C 0.51 6.60 4.19 -10.99 -0.05 6.56 16 16 O -0.53 -8.12 14.09 5.56 0.08 -8.05 16 17 C 0.12 1.17 3.79 -68.71 -0.26 0.91 16 18 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 19 C -0.11 -0.99 5.34 -27.36 -0.15 -1.13 16 20 C -0.15 -1.55 5.16 -27.96 -0.14 -1.70 16 21 C -0.11 -1.16 5.67 -27.32 -0.15 -1.31 16 22 C -0.18 -2.35 5.34 -27.50 -0.15 -2.50 16 23 C 0.52 7.47 5.60 -11.14 -0.06 7.40 16 24 O -0.54 -9.99 17.92 5.56 0.10 -9.89 16 25 N -0.73 -7.81 4.61 -54.51 -0.25 -8.07 16 26 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 27 C -0.17 -4.15 8.69 -38.87 -0.34 -4.49 16 28 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 29 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16 32 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.40 6.23 6.68 -40.82 -0.27 5.96 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 36 H 0.10 1.26 4.77 -51.93 -0.25 1.01 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.64 7.86 -51.93 -0.41 0.23 16 40 H 0.12 1.68 3.05 -51.92 -0.16 1.52 16 41 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.40 3.73 8.92 -40.82 -0.36 3.37 16 43 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.12 3.13 6.08 -52.48 -0.32 2.82 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -29.05 347.91 -9.48 -38.53 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -5.95 Total: 15.54 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -4.05 Total: -16.60 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.13 Total: -37.93 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.18 Total: -17.93 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.05 -9.48 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583631726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.930 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds