Wall clock time and date at job start Tue Mar 31 2020 11:30:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30823 * 1
3 3 Si 1.86803 * 120.00144 * 2 1
4 4 H 1.48498 * 109.47179 * 240.00022 * 3 2 1
5 5 H 1.48500 * 109.46840 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.46500 * 120.00053 * 3 2 1
7 7 C 1.39952 * 119.99935 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99617 * 165.40730 * 7 2 1
9 9 C 1.41389 * 120.00046 * 345.67769 * 7 2 1
10 10 C 1.40715 * 120.24607 * 154.51697 * 9 7 2
11 11 C 1.37623 * 119.74422 * 179.74048 * 10 9 7
12 12 C 1.38627 * 120.24749 * 0.53963 * 11 10 9
13 13 C 1.50699 * 119.74932 * 179.69474 * 12 11 10
14 14 N 1.46502 * 109.47086 * 270.01849 * 13 12 11
15 15 C 1.34780 * 120.00027 * 179.97438 * 14 13 12
16 16 O 1.21283 * 120.00042 * 0.02562 * 15 14 13
17 17 C 1.50697 * 119.99882 * 179.97438 * 15 14 13
18 18 H 1.08999 * 109.60447 * 264.21561 * 17 15 14
19 19 C 1.52989 * 109.60152 * 143.88795 * 17 15 14
20 20 C 1.51779 * 110.88048 * 326.71125 * 19 17 15
21 21 C 1.51791 * 113.80730 * 292.99960 * 20 19 17
22 22 C 1.53057 * 110.74735 * 66.81646 * 21 20 19
23 23 C 1.51424 * 108.49415 * 275.07774 * 22 21 20
24 24 O 1.21278 * 119.89163 * 251.24560 * 23 22 21
25 25 N 1.33632 * 120.27915 * 71.34954 * 23 22 21
26 26 C 1.38637 * 120.50338 * 359.71510 * 12 11 10
27 27 C 1.37613 * 120.24693 * 0.02562 * 26 12 11
28 28 H 0.97001 * 119.99592 * 359.97438 * 1 2 3
29 29 H 1.08001 * 120.12351 * 359.97438 * 10 9 7
30 30 H 1.07994 * 119.87295 * 180.27267 * 11 10 9
31 31 H 1.09003 * 109.47080 * 30.01956 * 13 12 11
32 32 H 1.09007 * 109.47466 * 150.01819 * 13 12 11
33 33 H 0.96993 * 119.99972 * 359.97438 * 14 13 12
34 34 H 1.09004 * 109.19770 * 87.06802 * 19 17 15
35 35 H 1.09000 * 109.20138 * 206.39328 * 19 17 15
36 36 H 1.08998 * 108.62006 * 54.12384 * 20 19 17
37 37 H 1.09000 * 108.61722 * 171.88458 * 20 19 17
38 38 H 1.09005 * 109.22496 * 187.14175 * 21 20 19
39 39 H 1.08997 * 109.22777 * 306.53357 * 21 20 19
40 40 H 1.09008 * 109.63398 * 34.77791 * 22 21 20
41 41 H 1.09004 * 109.63748 * 155.17518 * 22 21 20
42 42 H 0.97004 * 119.96349 * 180.31518 * 25 23 22
43 43 H 1.08002 * 119.87562 * 180.02562 * 26 12 11
44 44 H 1.08010 * 120.12916 * 179.97438 * 27 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.0960 1.6964 -1.2125
5 1 1.2773 2.7464 0.0006
6 1 3.0960 1.6962 1.2126
7 6 2.0080 -1.2120 -0.0005
8 1 3.0619 -1.2269 -0.2362
9 6 1.3340 -2.4176 0.3018
10 6 1.8196 -3.6436 -0.1894
11 6 1.1585 -4.8114 0.1158
12 6 0.0119 -4.7818 0.8945
13 6 -0.7070 -6.0666 1.2160
14 7 -1.7088 -6.3376 0.1819
15 6 -2.4777 -7.4417 0.2614
16 8 -2.3406 -8.2107 1.1892
17 6 -3.5086 -7.7201 -0.8020
18 1 -4.4808 -7.3520 -0.4741
19 6 -3.5892 -9.2264 -1.0568
20 6 -2.2305 -9.8788 -0.8778
21 6 -1.2093 -9.4639 -1.9213
22 6 -0.8500 -7.9838 -1.7697
23 6 -1.8756 -7.1612 -2.5209
24 8 -1.5646 -6.6014 -3.5509
25 7 -3.1220 -7.0474 -2.0528
26 6 -0.4786 -3.5792 1.3793
27 6 0.1692 -2.3997 1.0913
28 1 -0.4849 0.8401 0.0004
29 1 2.7099 -3.6683 -0.8003
30 1 1.5319 -5.7539 -0.2564
31 1 0.0110 -6.8861 1.2499
32 1 -1.1997 -5.9750 2.1840
33 1 -1.8187 -5.7224 -0.5599
34 1 -4.2955 -9.6712 -0.3557
35 1 -3.9378 -9.3996 -2.0749
36 1 -1.8463 -9.6178 0.1083
37 1 -2.3552 -10.9607 -0.9239
38 1 -0.3086 -10.0659 -1.8012
39 1 -1.6233 -9.6319 -2.9154
40 1 -0.8624 -7.7100 -0.7146
41 1 0.1424 -7.8036 -2.1831
42 1 -3.7766 -6.5230 -2.5401
43 1 -1.3724 -3.5679 1.9854
44 1 -0.2148 -1.4638 1.4697
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000583631726.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:05
Heat of formation + Delta-G solvation = -62.279497 kcal
Electronic energy + Delta-G solvation = -26954.072371 eV
Core-core repulsion = 23256.337577 eV
Total energy + Delta-G solvation = -3697.734794 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.58384 -40.09999 -39.47918 -37.27895 -36.46200 -35.34662 -34.86211 -32.26559
-31.88814 -31.18798 -29.05168 -27.66157 -25.73473 -25.07244 -22.94469 -22.77159
-21.81406 -21.18946 -20.67660 -19.26088 -18.82164 -18.55954 -17.40028 -17.05488
-16.89350 -16.48198 -16.04122 -15.82234 -15.52348 -15.48352 -15.12604 -14.80246
-14.70950 -14.42060 -14.21178 -13.84860 -13.69188 -13.58743 -13.48804 -13.33220
-12.82105 -12.73985 -12.61564 -12.46356 -12.11730 -12.06073 -11.78286 -11.58847
-11.50131 -11.30045 -11.12389 -10.96966 -10.86526 -10.22574 -9.87766 -9.41276
-9.27588 -8.65570 -6.40071 0.82361 1.11883 1.36913 1.42125 1.45617
1.48690 1.51766 2.11681 2.18678 2.29985 2.75395 3.41463 3.52174
3.72167 3.76441 3.88548 4.01089 4.12840 4.19267 4.29932 4.31122
4.47880 4.51785 4.64174 4.71774 4.78684 4.84639 4.98966 5.02497
5.03597 5.12409 5.16950 5.23009 5.29160 5.35012 5.42381 5.58400
5.66411 5.76165 5.88561 6.01904 6.06961 6.17167 6.34982 6.46354
6.66475 6.90377 6.98718 7.07435 7.12251 8.29345
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.022790 B = 0.003233 C = 0.003133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1228.296625 B = 8658.237567 C = 8935.858651
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.822 5.822
2 C 0.035 3.965
3 Si 0.983 3.017
4 H -0.261 1.261
5 H -0.266 1.266
6 H -0.260 1.260
7 C -0.498 4.498
8 H 0.074 0.926
9 C 0.085 3.915
10 C -0.245 4.245
11 C -0.070 4.070
12 C -0.228 4.228
13 C 0.189 3.811
14 N -0.721 5.721
15 C 0.507 3.493
16 O -0.550 6.550
17 C 0.126 3.874
18 H 0.162 0.838
19 C -0.113 4.113
20 C -0.153 4.153
21 C -0.104 4.104
22 C -0.179 4.179
23 C 0.521 3.479
24 O -0.589 6.589
25 N -0.710 5.710
26 C -0.084 4.084
27 C -0.190 4.190
28 H 0.289 0.711
29 H 0.094 0.906
30 H 0.114 0.886
31 H 0.070 0.930
32 H 0.067 0.933
33 H 0.401 0.599
34 H 0.103 0.897
35 H 0.089 0.911
36 H 0.081 0.919
37 H 0.082 0.918
38 H 0.083 0.917
39 H 0.063 0.937
40 H 0.117 0.883
41 H 0.084 0.916
42 H 0.415 0.585
43 H 0.108 0.892
44 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.364 -14.823 -0.549 17.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.448 5.448
2 C -0.180 4.180
3 Si 0.804 3.196
4 H -0.186 1.186
5 H -0.190 1.190
6 H -0.184 1.184
7 C -0.528 4.528
8 H 0.093 0.907
9 C 0.082 3.918
10 C -0.265 4.265
11 C -0.089 4.089
12 C -0.230 4.230
13 C 0.067 3.933
14 N -0.373 5.373
15 C 0.295 3.705
16 O -0.429 6.429
17 C 0.018 3.982
18 H 0.179 0.821
19 C -0.151 4.151
20 C -0.191 4.191
21 C -0.142 4.142
22 C -0.220 4.220
23 C 0.309 3.691
24 O -0.470 6.470
25 N -0.365 5.365
26 C -0.103 4.103
27 C -0.210 4.210
28 H 0.099 0.901
29 H 0.112 0.888
30 H 0.132 0.868
31 H 0.088 0.912
32 H 0.086 0.914
33 H 0.237 0.763
34 H 0.122 0.878
35 H 0.108 0.892
36 H 0.099 0.901
37 H 0.100 0.900
38 H 0.101 0.899
39 H 0.081 0.919
40 H 0.135 0.865
41 H 0.103 0.897
42 H 0.254 0.746
43 H 0.126 0.874
44 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -9.177 -15.042 -0.290 17.623
hybrid contribution 0.336 1.670 -0.716 1.848
sum -8.841 -13.372 -1.006 16.062
Atomic orbital electron populations
1.69844 1.08865 1.30598 1.35508 1.26756 0.95592 1.04484 0.91214
0.85238 0.78776 0.75616 0.80016 1.18583 1.19048 1.18397 1.19893
0.97262 0.92251 1.43365 0.90735 1.18006 0.92090 0.92977 0.88684
1.21182 1.04025 0.93497 1.07773 1.20681 0.94877 0.96711 0.96609
1.19261 1.00197 0.93784 1.09722 1.19853 0.89297 0.93835 0.90286
1.46838 1.37339 1.25025 1.28048 1.20987 0.81828 0.80511 0.87141
1.90657 1.69575 1.47043 1.35610 1.21836 0.99038 0.96163 0.81139
0.82105 1.21605 0.98561 0.90711 1.04234 1.21608 0.94929 1.01866
1.00649 1.21191 1.00651 0.92382 1.00005 1.22818 0.97995 0.97116
1.04063 1.20933 0.84120 0.79607 0.84418 1.90755 1.80291 1.49076
1.26844 1.45983 1.12129 1.52947 1.25486 1.20795 0.98280 0.92320
0.98868 1.21351 0.99568 0.97251 1.02791 0.90070 0.88792 0.86825
0.91217 0.91445 0.76343 0.87831 0.89214 0.90079 0.89983 0.89871
0.91865 0.86544 0.89694 0.74649 0.87367 0.87738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -42.52 10.80 21.83 0.24 -42.28 16
2 C 0.03 1.73 5.21 85.26 0.44 2.18 16
3 Si 0.98 38.04 29.58 68.60 2.03 40.07 16
4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16
5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16
6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16
7 C -0.50 -26.89 9.07 23.46 0.21 -26.67 16
8 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16
9 C 0.08 4.54 5.58 -21.29 -0.12 4.43 16
10 C -0.25 -11.95 9.80 22.73 0.22 -11.72 16
11 C -0.07 -2.94 9.67 22.22 0.21 -2.73 16
12 C -0.23 -8.93 5.27 -19.68 -0.10 -9.03 16
13 C 0.19 5.89 5.51 85.63 0.47 6.36 16
14 N -0.72 -19.56 3.51 -466.77 -1.64 -21.20 16
15 C 0.51 11.82 4.19 87.66 0.37 12.18 16
16 O -0.55 -15.16 14.09 -3.04 -0.04 -15.20 16
17 C 0.13 1.96 3.79 44.11 0.17 2.12 16
18 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16
19 C -0.11 -1.48 5.34 30.19 0.16 -1.32 16
20 C -0.15 -2.60 5.16 29.80 0.15 -2.44 16
21 C -0.10 -2.01 5.67 30.22 0.17 -1.84 16
22 C -0.18 -4.49 5.34 30.10 0.16 -4.33 16
23 C 0.52 14.28 5.60 88.07 0.49 14.77 16
24 O -0.59 -21.90 17.92 -3.02 -0.05 -21.96 16
25 N -0.71 -13.52 4.61 -445.40 -2.05 -15.57 16
26 C -0.08 -3.65 9.67 22.22 0.21 -3.43 16
27 C -0.19 -9.74 8.69 22.73 0.20 -9.54 16
28 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16
29 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16
30 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16
31 H 0.07 2.09 7.98 -2.39 -0.02 2.07 16
32 H 0.07 2.07 8.08 -2.38 -0.02 2.05 16
33 H 0.40 11.72 6.68 -92.71 -0.62 11.10 16
34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
35 H 0.09 1.00 8.05 -2.39 -0.02 0.98 16
36 H 0.08 1.78 4.77 -2.39 -0.01 1.77 16
37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
38 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16
39 H 0.06 1.20 7.86 -2.39 -0.02 1.18 16
40 H 0.12 3.02 3.05 -2.38 -0.01 3.02 16
41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16
42 H 0.41 6.60 8.92 -92.71 -0.83 5.77 16
43 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16
44 H 0.10 5.64 6.08 -2.91 -0.02 5.62 16
Total: -1.00 -65.84 347.91 1.51 -64.33
By element:
Atomic # 1 Polarization: 43.21 SS G_CDS: -0.40 Total: 42.81 kcal
Atomic # 6 Polarization: -34.43 SS G_CDS: 3.43 Total: -31.00 kcal
Atomic # 7 Polarization: -75.60 SS G_CDS: -3.46 Total: -79.05 kcal
Atomic # 8 Polarization: -37.06 SS G_CDS: -0.10 Total: -37.16 kcal
Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal
Total: -65.84 1.51 -64.33 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000583631726.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.049 kcal
(2) G-P(sol) polarization free energy of solvation -65.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.789 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.329 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.279 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds