Wall clock time and date at job start Tue Mar 31 2020 11:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 120.00144 * 2 1 4 4 H 1.48498 * 109.47179 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.46840 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46500 * 120.00053 * 3 2 1 7 7 C 1.39952 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99617 * 165.40730 * 7 2 1 9 9 C 1.41389 * 120.00046 * 345.67769 * 7 2 1 10 10 C 1.40715 * 120.24607 * 154.51697 * 9 7 2 11 11 C 1.37623 * 119.74422 * 179.74048 * 10 9 7 12 12 C 1.38627 * 120.24749 * 0.53963 * 11 10 9 13 13 C 1.50699 * 119.74932 * 179.69474 * 12 11 10 14 14 N 1.46502 * 109.47086 * 270.01849 * 13 12 11 15 15 C 1.34780 * 120.00027 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99882 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.60447 * 264.21561 * 17 15 14 19 19 C 1.52989 * 109.60152 * 143.88795 * 17 15 14 20 20 C 1.51779 * 110.88048 * 326.71125 * 19 17 15 21 21 C 1.51791 * 113.80730 * 292.99960 * 20 19 17 22 22 C 1.53057 * 110.74735 * 66.81646 * 21 20 19 23 23 C 1.51424 * 108.49415 * 275.07774 * 22 21 20 24 24 O 1.21278 * 119.89163 * 251.24560 * 23 22 21 25 25 N 1.33632 * 120.27915 * 71.34954 * 23 22 21 26 26 C 1.38637 * 120.50338 * 359.71510 * 12 11 10 27 27 C 1.37613 * 120.24693 * 0.02562 * 26 12 11 28 28 H 0.97001 * 119.99592 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.12351 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.87295 * 180.27267 * 11 10 9 31 31 H 1.09003 * 109.47080 * 30.01956 * 13 12 11 32 32 H 1.09007 * 109.47466 * 150.01819 * 13 12 11 33 33 H 0.96993 * 119.99972 * 359.97438 * 14 13 12 34 34 H 1.09004 * 109.19770 * 87.06802 * 19 17 15 35 35 H 1.09000 * 109.20138 * 206.39328 * 19 17 15 36 36 H 1.08998 * 108.62006 * 54.12384 * 20 19 17 37 37 H 1.09000 * 108.61722 * 171.88458 * 20 19 17 38 38 H 1.09005 * 109.22496 * 187.14175 * 21 20 19 39 39 H 1.08997 * 109.22777 * 306.53357 * 21 20 19 40 40 H 1.09008 * 109.63398 * 34.77791 * 22 21 20 41 41 H 1.09004 * 109.63748 * 155.17518 * 22 21 20 42 42 H 0.97004 * 119.96349 * 180.31518 * 25 23 22 43 43 H 1.08002 * 119.87562 * 180.02562 * 26 12 11 44 44 H 1.08010 * 120.12916 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6962 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0619 -1.2269 -0.2362 9 6 1.3340 -2.4176 0.3018 10 6 1.8196 -3.6436 -0.1894 11 6 1.1585 -4.8114 0.1158 12 6 0.0119 -4.7818 0.8945 13 6 -0.7070 -6.0666 1.2160 14 7 -1.7088 -6.3376 0.1819 15 6 -2.4777 -7.4417 0.2614 16 8 -2.3406 -8.2107 1.1892 17 6 -3.5086 -7.7201 -0.8020 18 1 -4.4808 -7.3520 -0.4741 19 6 -3.5892 -9.2264 -1.0568 20 6 -2.2305 -9.8788 -0.8778 21 6 -1.2093 -9.4639 -1.9213 22 6 -0.8500 -7.9838 -1.7697 23 6 -1.8756 -7.1612 -2.5209 24 8 -1.5646 -6.6014 -3.5509 25 7 -3.1220 -7.0474 -2.0528 26 6 -0.4786 -3.5792 1.3793 27 6 0.1692 -2.3997 1.0913 28 1 -0.4849 0.8401 0.0004 29 1 2.7099 -3.6683 -0.8003 30 1 1.5319 -5.7539 -0.2564 31 1 0.0110 -6.8861 1.2499 32 1 -1.1997 -5.9750 2.1840 33 1 -1.8187 -5.7224 -0.5599 34 1 -4.2955 -9.6712 -0.3557 35 1 -3.9378 -9.3996 -2.0749 36 1 -1.8463 -9.6178 0.1083 37 1 -2.3552 -10.9607 -0.9239 38 1 -0.3086 -10.0659 -1.8012 39 1 -1.6233 -9.6319 -2.9154 40 1 -0.8624 -7.7100 -0.7146 41 1 0.1424 -7.8036 -2.1831 42 1 -3.7766 -6.5230 -2.5401 43 1 -1.3724 -3.5679 1.9854 44 1 -0.2148 -1.4638 1.4697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583631726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:05 Heat of formation + Delta-G solvation = -62.279497 kcal Electronic energy + Delta-G solvation = -26954.072371 eV Core-core repulsion = 23256.337577 eV Total energy + Delta-G solvation = -3697.734794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.58384 -40.09999 -39.47918 -37.27895 -36.46200 -35.34662 -34.86211 -32.26559 -31.88814 -31.18798 -29.05168 -27.66157 -25.73473 -25.07244 -22.94469 -22.77159 -21.81406 -21.18946 -20.67660 -19.26088 -18.82164 -18.55954 -17.40028 -17.05488 -16.89350 -16.48198 -16.04122 -15.82234 -15.52348 -15.48352 -15.12604 -14.80246 -14.70950 -14.42060 -14.21178 -13.84860 -13.69188 -13.58743 -13.48804 -13.33220 -12.82105 -12.73985 -12.61564 -12.46356 -12.11730 -12.06073 -11.78286 -11.58847 -11.50131 -11.30045 -11.12389 -10.96966 -10.86526 -10.22574 -9.87766 -9.41276 -9.27588 -8.65570 -6.40071 0.82361 1.11883 1.36913 1.42125 1.45617 1.48690 1.51766 2.11681 2.18678 2.29985 2.75395 3.41463 3.52174 3.72167 3.76441 3.88548 4.01089 4.12840 4.19267 4.29932 4.31122 4.47880 4.51785 4.64174 4.71774 4.78684 4.84639 4.98966 5.02497 5.03597 5.12409 5.16950 5.23009 5.29160 5.35012 5.42381 5.58400 5.66411 5.76165 5.88561 6.01904 6.06961 6.17167 6.34982 6.46354 6.66475 6.90377 6.98718 7.07435 7.12251 8.29345 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.003233 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.296625 B = 8658.237567 C = 8935.858651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.074 0.926 9 C 0.085 3.915 10 C -0.245 4.245 11 C -0.070 4.070 12 C -0.228 4.228 13 C 0.189 3.811 14 N -0.721 5.721 15 C 0.507 3.493 16 O -0.550 6.550 17 C 0.126 3.874 18 H 0.162 0.838 19 C -0.113 4.113 20 C -0.153 4.153 21 C -0.104 4.104 22 C -0.179 4.179 23 C 0.521 3.479 24 O -0.589 6.589 25 N -0.710 5.710 26 C -0.084 4.084 27 C -0.190 4.190 28 H 0.289 0.711 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.415 0.585 43 H 0.108 0.892 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -14.823 -0.549 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.265 4.265 11 C -0.089 4.089 12 C -0.230 4.230 13 C 0.067 3.933 14 N -0.373 5.373 15 C 0.295 3.705 16 O -0.429 6.429 17 C 0.018 3.982 18 H 0.179 0.821 19 C -0.151 4.151 20 C -0.191 4.191 21 C -0.142 4.142 22 C -0.220 4.220 23 C 0.309 3.691 24 O -0.470 6.470 25 N -0.365 5.365 26 C -0.103 4.103 27 C -0.210 4.210 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.254 0.746 43 H 0.126 0.874 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.177 -15.042 -0.290 17.623 hybrid contribution 0.336 1.670 -0.716 1.848 sum -8.841 -13.372 -1.006 16.062 Atomic orbital electron populations 1.69844 1.08865 1.30598 1.35508 1.26756 0.95592 1.04484 0.91214 0.85238 0.78776 0.75616 0.80016 1.18583 1.19048 1.18397 1.19893 0.97262 0.92251 1.43365 0.90735 1.18006 0.92090 0.92977 0.88684 1.21182 1.04025 0.93497 1.07773 1.20681 0.94877 0.96711 0.96609 1.19261 1.00197 0.93784 1.09722 1.19853 0.89297 0.93835 0.90286 1.46838 1.37339 1.25025 1.28048 1.20987 0.81828 0.80511 0.87141 1.90657 1.69575 1.47043 1.35610 1.21836 0.99038 0.96163 0.81139 0.82105 1.21605 0.98561 0.90711 1.04234 1.21608 0.94929 1.01866 1.00649 1.21191 1.00651 0.92382 1.00005 1.22818 0.97995 0.97116 1.04063 1.20933 0.84120 0.79607 0.84418 1.90755 1.80291 1.49076 1.26844 1.45983 1.12129 1.52947 1.25486 1.20795 0.98280 0.92320 0.98868 1.21351 0.99568 0.97251 1.02791 0.90070 0.88792 0.86825 0.91217 0.91445 0.76343 0.87831 0.89214 0.90079 0.89983 0.89871 0.91865 0.86544 0.89694 0.74649 0.87367 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.52 10.80 21.83 0.24 -42.28 16 2 C 0.03 1.73 5.21 85.26 0.44 2.18 16 3 Si 0.98 38.04 29.58 68.60 2.03 40.07 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.50 -26.89 9.07 23.46 0.21 -26.67 16 8 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 9 C 0.08 4.54 5.58 -21.29 -0.12 4.43 16 10 C -0.25 -11.95 9.80 22.73 0.22 -11.72 16 11 C -0.07 -2.94 9.67 22.22 0.21 -2.73 16 12 C -0.23 -8.93 5.27 -19.68 -0.10 -9.03 16 13 C 0.19 5.89 5.51 85.63 0.47 6.36 16 14 N -0.72 -19.56 3.51 -466.77 -1.64 -21.20 16 15 C 0.51 11.82 4.19 87.66 0.37 12.18 16 16 O -0.55 -15.16 14.09 -3.04 -0.04 -15.20 16 17 C 0.13 1.96 3.79 44.11 0.17 2.12 16 18 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 19 C -0.11 -1.48 5.34 30.19 0.16 -1.32 16 20 C -0.15 -2.60 5.16 29.80 0.15 -2.44 16 21 C -0.10 -2.01 5.67 30.22 0.17 -1.84 16 22 C -0.18 -4.49 5.34 30.10 0.16 -4.33 16 23 C 0.52 14.28 5.60 88.07 0.49 14.77 16 24 O -0.59 -21.90 17.92 -3.02 -0.05 -21.96 16 25 N -0.71 -13.52 4.61 -445.40 -2.05 -15.57 16 26 C -0.08 -3.65 9.67 22.22 0.21 -3.43 16 27 C -0.19 -9.74 8.69 22.73 0.20 -9.54 16 28 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 29 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 30 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 31 H 0.07 2.09 7.98 -2.39 -0.02 2.07 16 32 H 0.07 2.07 8.08 -2.38 -0.02 2.05 16 33 H 0.40 11.72 6.68 -92.71 -0.62 11.10 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.00 8.05 -2.39 -0.02 0.98 16 36 H 0.08 1.78 4.77 -2.39 -0.01 1.77 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.06 1.20 7.86 -2.39 -0.02 1.18 16 40 H 0.12 3.02 3.05 -2.38 -0.01 3.02 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.41 6.60 8.92 -92.71 -0.83 5.77 16 43 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 44 H 0.10 5.64 6.08 -2.91 -0.02 5.62 16 Total: -1.00 -65.84 347.91 1.51 -64.33 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -0.40 Total: 42.81 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 3.43 Total: -31.00 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -3.46 Total: -79.05 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.10 Total: -37.16 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -65.84 1.51 -64.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583631726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.049 kcal (2) G-P(sol) polarization free energy of solvation -65.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds