Wall clock time and date at job start Tue Mar 31 2020 10:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48506 * 109.46872 * 239.99983 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47341 * 119.99899 * 3 2 1 7 7 C 1.37871 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00708 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99622 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99622 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 15 19 19 N 1.29903 * 124.85486 * 89.69452 * 18 17 16 20 20 C 1.36061 * 108.80186 * 179.90021 * 19 18 17 21 21 C 1.39591 * 133.80758 * 180.10115 * 20 19 18 22 22 C 1.37678 * 119.72812 * 180.26045 * 21 20 19 23 23 C 1.38716 * 120.42491 * 0.04553 * 22 21 20 24 24 C 1.37911 * 120.47416 * 359.95129 * 23 22 21 25 25 C 1.38669 * 119.87742 * 0.02565 * 24 23 22 26 26 O 1.34227 * 124.85853 * 270.00124 * 18 17 16 27 27 H 0.97002 * 120.00201 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.08998 * 109.47844 * 59.99593 * 10 9 7 31 31 H 1.09002 * 109.46838 * 299.99323 * 10 9 7 32 32 H 1.09001 * 109.46812 * 59.99559 * 11 10 9 33 33 H 1.09002 * 109.46935 * 299.99901 * 11 10 9 34 34 H 1.09001 * 109.46832 * 59.99801 * 12 11 10 35 35 H 1.09002 * 109.47153 * 299.99992 * 12 11 10 36 36 H 0.96996 * 120.00772 * 359.97438 * 15 13 12 37 37 H 1.09002 * 109.47068 * 299.99729 * 16 15 13 38 38 H 1.09001 * 109.47372 * 59.99816 * 16 15 13 39 39 H 1.09002 * 109.47153 * 300.00008 * 17 16 15 40 40 H 1.08998 * 109.47533 * 59.99637 * 17 16 15 41 41 H 1.07994 * 120.13037 * 0.30593 * 21 20 19 42 42 H 1.08007 * 119.78302 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.76371 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.05882 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6619 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1499 -0.0008 13 6 1.7213 -7.4551 -0.0008 14 8 0.5085 -7.4551 0.0002 15 7 2.3953 -8.6222 -0.0008 16 6 1.6628 -9.8910 -0.0002 17 6 2.6571 -11.0538 -0.0010 18 6 1.9037 -12.3590 0.0003 19 7 1.5264 -12.9994 -1.0651 20 6 0.8768 -14.1339 -0.6878 21 6 0.2717 -15.1791 -1.3877 22 6 -0.3227 -16.2102 -0.6956 23 6 -0.3247 -16.2159 0.6915 24 6 0.2693 -15.1899 1.3960 25 6 0.8732 -14.1436 0.7152 26 8 1.5213 -13.0231 1.1023 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5566 0.8903 30 1 2.8722 -3.6042 0.8904 31 1 2.8720 -3.6042 -0.8895 32 1 0.8541 -5.0445 -0.8903 33 1 0.8536 -5.0451 0.8897 34 1 3.1015 -6.0926 0.8892 35 1 3.1014 -6.0917 -0.8908 36 1 3.3652 -8.6222 -0.0011 37 1 1.0365 -9.9485 0.8901 38 1 1.0358 -9.9490 -0.8899 39 1 3.2830 -10.9961 -0.8914 40 1 3.2845 -10.9961 0.8885 41 1 0.2706 -15.1792 -2.4677 42 1 -0.7908 -17.0196 -1.2363 43 1 -0.7945 -17.0299 1.2236 44 1 0.2642 -15.2014 2.4759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:35 Heat of formation + Delta-G solvation = -26.619291 kcal Electronic energy + Delta-G solvation = -23787.965545 eV Core-core repulsion = 20091.777094 eV Total energy + Delta-G solvation = -3696.188452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.72803 -39.74907 -38.52055 -36.12330 -35.11086 -34.78587 -32.69966 -32.25551 -31.16532 -29.92554 -28.99568 -25.98119 -24.50741 -23.58986 -22.64709 -22.17012 -21.81758 -20.33010 -19.95133 -18.55535 -17.71097 -17.36356 -16.86777 -16.29566 -16.14243 -16.02465 -15.73690 -15.06876 -14.63839 -14.44611 -14.35784 -14.06477 -13.74468 -13.65195 -13.02324 -12.79917 -12.75371 -12.57723 -12.35283 -12.03080 -11.83968 -11.75797 -11.67219 -11.57364 -10.95365 -10.93424 -10.52538 -10.51149 -10.39262 -9.87802 -9.59461 -9.32378 -9.28528 -9.21080 -8.98551 -8.94468 -8.28429 -5.93245 -3.95933 0.16200 0.71594 1.85680 1.95990 2.69189 2.91086 3.14756 3.36622 3.40886 3.41363 3.43317 4.00923 4.24316 4.30840 4.37503 4.50472 4.57780 4.63654 4.75681 4.83864 4.87546 4.92270 5.31078 5.32003 5.35512 5.40260 5.42252 5.50468 5.52919 5.69908 5.78628 5.82077 5.86396 6.11501 6.15354 6.17403 6.31815 6.56147 6.85712 7.03730 7.12871 7.21586 7.34529 7.75794 7.92182 8.08067 8.21153 8.49739 9.11599 9.67627 11.17980 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.046348 B = 0.001467 C = 0.001454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.982086 B =19084.609159 C =19246.811515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.513 3.487 14 O -0.532 6.532 15 N -0.739 5.739 16 C 0.123 3.877 17 C -0.041 4.041 18 C 0.257 3.743 19 N -0.472 5.472 20 C 0.021 3.979 21 C -0.060 4.060 22 C -0.120 4.120 23 C -0.093 4.093 24 C -0.093 4.093 25 C 0.009 3.991 26 O -0.211 6.211 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.459 -36.234 1.109 36.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.301 3.699 14 O -0.407 6.407 15 N -0.393 5.393 16 C -0.002 4.002 17 C -0.079 4.079 18 C 0.045 3.955 19 N -0.201 5.201 20 C -0.091 4.091 21 C -0.079 4.079 22 C -0.139 4.139 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.042 4.042 26 O -0.102 6.102 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.236 0.764 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.499 -35.918 0.498 36.202 hybrid contribution 0.815 0.645 0.707 1.257 sum 5.314 -35.273 1.204 35.692 Atomic orbital electron populations 1.69963 1.06046 1.26602 1.50828 1.25035 0.94831 0.99197 0.95449 0.86675 0.79575 0.83280 0.78532 1.20297 1.21325 1.20296 1.21250 0.92949 0.91229 1.50558 0.92802 1.19098 0.94073 0.91266 0.97328 1.21652 0.99080 0.93985 1.00080 1.21465 0.97049 0.92720 1.03009 1.21797 1.00096 0.91717 1.04118 1.21142 0.88469 0.85426 0.74861 1.90727 1.14293 1.87575 1.48077 1.45983 1.10295 1.05226 1.77839 1.21170 0.93832 0.81415 1.03766 1.20402 0.96746 0.84131 1.06650 1.26019 0.95545 0.95630 0.78323 1.70659 1.15043 1.05581 1.28823 1.19919 1.02294 0.95477 0.91372 1.20373 0.95955 0.91097 1.00492 1.21088 1.00004 0.98593 0.94259 1.21060 0.98252 0.97578 0.94233 1.19932 0.99314 0.91373 1.00516 1.20358 0.99979 0.89213 0.94618 1.84505 1.59509 1.30086 1.36107 0.93003 0.96585 0.96584 0.93458 0.93451 0.91774 0.91789 0.89003 0.88968 0.76368 0.90850 0.90431 0.86263 0.87487 0.84496 0.84381 0.84083 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 13 C 0.51 6.86 7.83 -10.99 -0.09 6.77 16 14 O -0.53 -9.67 15.98 5.56 0.09 -9.58 16 15 N -0.74 -6.52 5.56 -60.29 -0.33 -6.86 16 16 C 0.12 1.08 5.66 -4.04 -0.02 1.06 16 17 C -0.04 -0.24 5.96 -27.89 -0.17 -0.41 16 18 C 0.26 2.42 7.49 -13.10 -0.10 2.32 16 19 N -0.47 -5.29 11.34 -8.70 -0.10 -5.38 16 20 C 0.02 0.22 7.24 -84.71 -0.61 -0.39 16 21 C -0.06 -0.47 10.10 -39.28 -0.40 -0.87 16 22 C -0.12 -0.66 10.02 -39.61 -0.40 -1.05 16 23 C -0.09 -0.48 10.03 -39.52 -0.40 -0.88 16 24 C -0.09 -0.65 10.06 -39.54 -0.40 -1.05 16 25 C 0.01 0.08 7.43 -38.64 -0.29 -0.20 16 26 O -0.21 -2.15 10.77 3.65 0.04 -2.11 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.40 2.07 8.47 -40.82 -0.35 1.72 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 43 H 0.14 0.31 8.06 -52.49 -0.42 -0.12 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -37.29 378.86 -9.36 -46.65 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -6.65 Total: -4.02 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.83 Total: -14.45 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.30 Total: -39.12 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.13 Total: -11.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.29 -9.36 -46.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.028 kcal (2) G-P(sol) polarization free energy of solvation -37.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds