Wall clock time and date at job start Tue Mar 31 2020 10:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48506 * 109.46872 * 239.99983 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47341 * 119.99899 * 3 2 1 7 7 C 1.37871 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00708 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99622 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99622 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 15 19 19 N 1.29903 * 124.85486 * 89.69452 * 18 17 16 20 20 C 1.36061 * 108.80186 * 179.90021 * 19 18 17 21 21 C 1.39591 * 133.80758 * 180.10115 * 20 19 18 22 22 C 1.37678 * 119.72812 * 180.26045 * 21 20 19 23 23 C 1.38716 * 120.42491 * 0.04553 * 22 21 20 24 24 C 1.37911 * 120.47416 * 359.95129 * 23 22 21 25 25 C 1.38669 * 119.87742 * 0.02565 * 24 23 22 26 26 O 1.34227 * 124.85853 * 270.00124 * 18 17 16 27 27 H 0.97002 * 120.00201 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.08998 * 109.47844 * 59.99593 * 10 9 7 31 31 H 1.09002 * 109.46838 * 299.99323 * 10 9 7 32 32 H 1.09001 * 109.46812 * 59.99559 * 11 10 9 33 33 H 1.09002 * 109.46935 * 299.99901 * 11 10 9 34 34 H 1.09001 * 109.46832 * 59.99801 * 12 11 10 35 35 H 1.09002 * 109.47153 * 299.99992 * 12 11 10 36 36 H 0.96996 * 120.00772 * 359.97438 * 15 13 12 37 37 H 1.09002 * 109.47068 * 299.99729 * 16 15 13 38 38 H 1.09001 * 109.47372 * 59.99816 * 16 15 13 39 39 H 1.09002 * 109.47153 * 300.00008 * 17 16 15 40 40 H 1.08998 * 109.47533 * 59.99637 * 17 16 15 41 41 H 1.07994 * 120.13037 * 0.30593 * 21 20 19 42 42 H 1.08007 * 119.78302 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.76371 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.05882 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6619 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1499 -0.0008 13 6 1.7213 -7.4551 -0.0008 14 8 0.5085 -7.4551 0.0002 15 7 2.3953 -8.6222 -0.0008 16 6 1.6628 -9.8910 -0.0002 17 6 2.6571 -11.0538 -0.0010 18 6 1.9037 -12.3590 0.0003 19 7 1.5264 -12.9994 -1.0651 20 6 0.8768 -14.1339 -0.6878 21 6 0.2717 -15.1791 -1.3877 22 6 -0.3227 -16.2102 -0.6956 23 6 -0.3247 -16.2159 0.6915 24 6 0.2693 -15.1899 1.3960 25 6 0.8732 -14.1436 0.7152 26 8 1.5213 -13.0231 1.1023 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5566 0.8903 30 1 2.8722 -3.6042 0.8904 31 1 2.8720 -3.6042 -0.8895 32 1 0.8541 -5.0445 -0.8903 33 1 0.8536 -5.0451 0.8897 34 1 3.1015 -6.0926 0.8892 35 1 3.1014 -6.0917 -0.8908 36 1 3.3652 -8.6222 -0.0011 37 1 1.0365 -9.9485 0.8901 38 1 1.0358 -9.9490 -0.8899 39 1 3.2830 -10.9961 -0.8914 40 1 3.2845 -10.9961 0.8885 41 1 0.2706 -15.1792 -2.4677 42 1 -0.7908 -17.0196 -1.2363 43 1 -0.7945 -17.0299 1.2236 44 1 0.2642 -15.2014 2.4759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588160415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:34 Heat of formation + Delta-G solvation = -53.633548 kcal Electronic energy + Delta-G solvation = -23789.136971 eV Core-core repulsion = 20091.777094 eV Total energy + Delta-G solvation = -3697.359878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.36048 -40.80700 -39.04162 -37.03705 -36.47903 -35.76129 -34.59726 -33.12179 -31.68716 -31.43228 -29.80830 -27.56760 -25.58974 -24.22719 -23.81733 -23.13637 -22.47705 -21.79233 -21.25991 -19.10370 -18.41195 -18.33565 -18.09927 -17.78902 -17.05221 -17.00041 -16.49146 -16.38873 -16.09127 -15.24465 -15.05806 -14.95828 -14.82369 -14.58167 -14.43056 -13.73337 -13.61267 -13.57172 -13.41615 -13.22797 -13.20887 -12.78996 -12.66151 -12.50746 -12.39026 -12.34560 -12.13861 -12.09361 -11.58109 -11.35023 -11.34383 -11.17486 -10.81264 -10.53082 -10.18975 -9.87128 -9.53531 -8.17197 -6.29658 -0.40354 0.16545 1.22214 1.36877 1.41333 1.45452 1.53271 1.64680 2.13222 2.43245 2.60534 2.78443 3.15431 3.43707 3.63618 3.81912 3.87775 3.90925 4.09530 4.11313 4.14869 4.18841 4.25576 4.34045 4.41702 4.65701 4.70221 4.74470 4.79556 4.88246 4.88756 4.91734 5.00716 5.13485 5.21979 5.28866 5.31521 5.34321 5.35753 5.42876 5.59133 5.67206 5.80115 5.89669 6.26604 6.46909 6.54696 6.88857 7.27543 7.40081 8.94748 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.046348 B = 0.001467 C = 0.001454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.982086 B =19084.609159 C =19246.811515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.099 4.099 12 C -0.126 4.126 13 C 0.512 3.488 14 O -0.591 6.591 15 N -0.712 5.712 16 C 0.128 3.872 17 C -0.028 4.028 18 C 0.249 3.751 19 N -0.502 5.502 20 C -0.014 4.014 21 C -0.080 4.080 22 C -0.110 4.110 23 C -0.083 4.083 24 C -0.103 4.103 25 C -0.020 4.020 26 O -0.223 6.223 27 H 0.262 0.738 28 H -0.017 1.017 29 H -0.016 1.016 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.425 0.575 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.172 0.828 43 H 0.179 0.821 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 -37.721 1.526 38.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.137 4.137 12 C -0.165 4.165 13 C 0.300 3.700 14 O -0.471 6.471 15 N -0.367 5.367 16 C 0.002 3.998 17 C -0.065 4.065 18 C 0.037 3.963 19 N -0.232 5.232 20 C -0.125 4.125 21 C -0.099 4.099 22 C -0.129 4.129 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.069 4.069 26 O -0.114 6.114 27 H 0.071 0.929 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.264 0.736 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.189 0.811 43 H 0.196 0.804 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.114 -37.451 0.914 38.131 hybrid contribution -0.073 0.981 0.572 1.137 sum 7.042 -36.470 1.486 37.174 Atomic orbital electron populations 1.70131 1.08102 1.27769 1.51837 1.26093 0.95762 1.03743 0.94759 0.85436 0.78161 0.77680 0.79356 1.18904 1.21144 1.18863 1.21745 0.93802 0.92227 1.50349 0.91455 1.19073 0.94760 0.93924 0.94253 1.21450 0.97781 0.92618 1.01457 1.21268 0.97626 0.93877 1.00918 1.21675 0.98816 0.88878 1.07149 1.21281 0.87723 0.86765 0.74229 1.90718 1.16844 1.88392 1.51132 1.45675 1.11403 1.03996 1.75634 1.21046 0.94409 0.82324 1.01973 1.20467 0.95757 0.81159 1.09159 1.26593 0.95447 0.96329 0.77957 1.70606 1.16079 1.06525 1.29948 1.20356 1.03622 0.96228 0.92264 1.20698 0.96632 0.91429 1.01149 1.21546 0.98383 0.98290 0.94711 1.21578 0.96637 0.97537 0.94309 1.20375 0.99100 0.91059 1.01679 1.20862 1.01154 0.89984 0.94944 1.84472 1.59905 1.30539 1.36532 0.92908 0.99828 0.99776 0.91872 0.91940 0.94081 0.93993 0.85801 0.85901 0.73633 0.92397 0.92729 0.84220 0.84435 0.83871 0.81050 0.80363 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.42 13.29 21.44 0.28 -59.14 16 2 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 9 C 0.02 0.94 4.97 29.85 0.15 1.09 16 10 C -0.10 -3.88 5.15 30.60 0.16 -3.72 16 11 C -0.10 -3.54 4.50 30.60 0.14 -3.41 16 12 C -0.13 -2.90 5.70 29.85 0.17 -2.73 16 13 C 0.51 13.27 7.83 87.66 0.69 13.96 16 14 O -0.59 -22.31 15.98 -3.03 -0.05 -22.36 16 15 N -0.71 -11.30 5.56 -463.06 -2.57 -13.87 16 16 C 0.13 2.22 5.66 86.38 0.49 2.71 16 17 C -0.03 -0.29 5.96 29.85 0.18 -0.11 16 18 C 0.25 4.79 7.49 88.39 0.66 5.45 16 19 N -0.50 -11.76 11.34 -296.28 -3.36 -15.12 16 20 C -0.01 -0.30 7.24 39.32 0.28 -0.02 16 21 C -0.08 -1.25 10.10 22.46 0.23 -1.02 16 22 C -0.11 -0.98 10.02 22.25 0.22 -0.76 16 23 C -0.08 -0.66 10.03 22.31 0.22 -0.43 16 24 C -0.10 -1.36 10.06 22.30 0.22 -1.13 16 25 C -0.02 -0.40 7.43 22.88 0.17 -0.23 16 26 O -0.22 -4.69 10.77 -9.87 -0.11 -4.80 16 27 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 28 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 29 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 32 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 33 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 34 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.42 2.86 8.47 -92.71 -0.79 2.08 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 44 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -87.24 378.86 1.12 -86.12 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.22 Total: 3.92 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 4.68 Total: -21.66 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -5.65 Total: -88.12 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.15 Total: -27.16 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -87.24 1.12 -86.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.486 kcal (2) G-P(sol) polarization free energy of solvation -87.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds