Wall clock time and date at job start Tue Mar 31 2020 10:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00121 * 2 1 4 4 H 1.48498 * 109.47389 * 90.00028 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00105 * 3 2 1 6 6 H 1.48494 * 109.47324 * 329.99868 * 3 2 1 7 7 C 1.37880 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99898 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00050 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47060 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47252 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47255 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99768 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00147 * 354.93826 * 13 12 11 15 15 C 1.50701 * 119.99856 * 174.94347 * 13 12 11 16 16 C 1.50707 * 110.85545 * 65.89005 * 15 13 12 17 17 C 1.38235 * 119.99709 * 185.80631 * 16 15 13 18 18 C 1.38234 * 119.99529 * 179.76504 * 17 16 15 19 19 C 1.38229 * 120.00065 * 0.51207 * 18 17 16 20 20 C 1.38236 * 120.00238 * 359.74430 * 19 18 17 21 21 C 1.38229 * 120.00025 * 6.08343 * 16 15 13 22 22 C 1.54481 * 110.96895 * 302.10234 * 15 13 12 23 23 N 1.46862 * 105.42228 * 267.28184 * 22 15 13 24 24 C 1.34422 * 111.31237 * 342.98468 * 23 22 15 25 25 O 1.21277 * 124.94269 * 180.37932 * 24 23 22 26 26 C 1.51289 * 110.11442 * 0.40731 * 24 23 22 27 27 H 0.97001 * 119.99537 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46871 * 300.00299 * 9 7 2 29 29 H 1.09000 * 109.46828 * 60.00222 * 9 7 2 30 30 H 1.09003 * 109.47444 * 300.00328 * 10 9 7 31 31 H 1.09005 * 109.47207 * 59.99879 * 10 9 7 32 32 H 1.09001 * 109.47163 * 299.99887 * 11 10 9 33 33 H 1.09000 * 109.47059 * 59.99856 * 11 10 9 34 34 H 0.97001 * 120.00035 * 359.97438 * 12 11 10 35 35 H 1.07999 * 119.99927 * 0.02562 * 17 16 15 36 36 H 1.08004 * 119.99897 * 180.22960 * 18 17 16 37 37 H 1.08005 * 119.99860 * 179.72116 * 19 18 17 38 38 H 1.08005 * 119.99971 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.00244 * 0.02562 * 21 16 15 40 40 H 1.08994 * 110.24571 * 26.29535 * 22 15 13 41 41 H 1.08993 * 110.24177 * 148.29782 * 22 15 13 42 42 H 0.97001 * 124.34109 * 162.97263 * 23 22 15 43 43 H 1.08997 * 110.48523 * 257.57767 * 26 24 23 44 44 H 1.08998 * 110.59307 * 134.99194 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0398 -4.0179 -0.0004 13 6 7.3649 -4.2642 0.0001 14 8 8.1523 -3.3463 -0.0917 15 6 7.8681 -5.6801 0.1146 16 6 7.4849 -6.4856 -1.1001 17 6 7.7467 -7.8423 -1.1405 18 6 7.3908 -8.5820 -2.2527 19 6 6.7828 -7.9631 -3.3288 20 6 6.5258 -6.6053 -3.2906 21 6 6.8769 -5.8666 -2.1762 22 6 7.3493 -6.3483 1.4072 23 7 8.3916 -6.1119 2.4145 24 6 9.5539 -5.7560 1.8406 25 8 10.5782 -5.5094 2.4412 26 6 9.3981 -5.7073 0.3366 27 1 -0.4849 0.8401 -0.0004 28 1 3.8745 -0.6808 -0.8905 29 1 3.8752 -0.6797 0.8895 30 1 3.6585 -3.1503 0.8903 31 1 3.6578 -3.1506 -0.8897 32 1 5.9149 -2.1229 -0.8899 33 1 5.9148 -2.1227 0.8901 34 1 5.4094 -4.7552 -0.0003 35 1 8.2254 -8.3251 -0.3014 36 1 7.5920 -9.6427 -2.2828 37 1 6.5089 -8.5402 -4.1997 38 1 6.0511 -6.1217 -4.1316 39 1 6.6768 -4.8057 -2.1467 40 1 6.4114 -5.8889 1.7190 41 1 7.2122 -7.4181 1.2499 42 1 8.2582 -6.2009 3.3712 43 1 9.8342 -6.5953 -0.1210 44 1 9.8584 -4.8058 -0.0675 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593976334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:25 Heat of formation + Delta-G solvation = -53.632104 kcal Electronic energy + Delta-G solvation = -26138.704580 eV Core-core repulsion = 22441.344765 eV Total energy + Delta-G solvation = -3697.359815 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70608 -39.38939 -38.99376 -36.57994 -35.69321 -33.55710 -33.11040 -31.58856 -31.18105 -29.82851 -28.20629 -27.04734 -24.55653 -23.12181 -22.66657 -21.75730 -20.89779 -20.69596 -19.58899 -18.07588 -17.82650 -16.88366 -16.64997 -16.02083 -15.66863 -15.57135 -15.28304 -15.09211 -14.81889 -14.32927 -14.17090 -14.03538 -13.83721 -13.66717 -13.45990 -13.12801 -13.05696 -12.75804 -12.17156 -12.11600 -11.97495 -11.87886 -11.56102 -11.39064 -11.16516 -10.94871 -10.34617 -10.19631 -10.06482 -9.86329 -9.71172 -9.45370 -9.28372 -9.27023 -9.11160 -9.00989 -8.60060 -6.10865 -4.09946 0.90054 1.04630 2.32121 2.41518 2.97631 3.01068 3.27895 3.34714 3.35939 3.39458 3.87097 4.02185 4.07324 4.40257 4.48606 4.51602 4.65774 4.69702 4.85406 4.97750 5.04465 5.12181 5.21602 5.23247 5.30565 5.45774 5.54208 5.56677 5.59894 5.68143 5.91006 6.09090 6.14067 6.19228 6.20499 6.34759 6.43095 6.56568 6.60472 6.66413 6.70089 7.15993 7.29357 7.40337 7.70908 7.94830 8.06789 8.45018 8.92647 9.51337 11.02287 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013690 B = 0.003230 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.760308 B = 8665.705662 C = 9983.108507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.113 3.887 12 N -0.721 5.721 13 C 0.526 3.474 14 O -0.527 6.527 15 C -0.053 4.053 16 C -0.073 4.073 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.110 4.110 21 C -0.108 4.108 22 C 0.114 3.886 23 N -0.732 5.732 24 C 0.526 3.474 25 O -0.529 6.529 26 C -0.137 4.137 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.401 0.599 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.414 0.586 43 H 0.114 0.886 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.016 -20.299 -3.150 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.213 1.213 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.372 5.372 13 C 0.310 3.690 14 O -0.403 6.403 15 C -0.057 4.057 16 C -0.074 4.074 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.011 4.011 23 N -0.389 5.389 24 C 0.312 3.688 25 O -0.404 6.404 26 C -0.177 4.177 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.236 0.764 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.253 0.747 43 H 0.132 0.868 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.982 -19.333 -3.001 25.263 hybrid contribution -0.282 0.537 0.378 0.715 sum 15.701 -18.796 -2.623 24.631 Atomic orbital electron populations 1.69908 1.06321 1.27003 1.50857 1.25023 0.94741 0.99230 0.94420 0.86787 0.80401 0.83559 0.78617 1.20242 1.18908 1.21331 1.21077 0.89247 0.94503 1.51273 0.91000 1.19500 0.97329 0.91369 0.96686 1.21708 0.90379 1.01165 1.01823 1.21730 0.96348 0.80701 1.02206 1.46201 1.06256 1.10336 1.74413 1.19809 0.82987 0.89571 0.76619 1.90736 1.55312 1.45544 1.48740 1.20599 0.97139 0.93373 0.94557 1.19148 1.00658 0.93575 0.94021 1.20923 1.00257 0.92888 0.98737 1.21123 0.98845 0.99947 0.93502 1.21254 0.98513 0.94922 0.98605 1.21211 0.99299 0.94206 0.98091 1.21280 0.97727 1.00574 0.93078 1.22272 0.91760 1.01168 0.85933 1.46207 1.11893 1.71041 1.09771 1.20778 0.82831 0.74821 0.90326 1.90764 1.30392 1.49404 1.69873 1.22460 0.93643 1.07213 0.94373 0.92655 0.96290 0.96764 0.92093 0.91962 0.91458 0.91637 0.76397 0.85729 0.85733 0.85829 0.85505 0.85374 0.89189 0.89210 0.74693 0.86815 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -14.31 9.66 -34.44 -0.33 -14.64 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -1.95 5.27 -26.74 -0.14 -2.09 16 11 C 0.11 1.69 5.68 -4.04 -0.02 1.67 16 12 N -0.72 -8.56 4.17 -60.29 -0.25 -8.81 16 13 C 0.53 6.66 5.04 -10.98 -0.06 6.61 16 14 O -0.53 -8.86 15.52 5.56 0.09 -8.77 16 15 C -0.05 -0.49 0.69 -155.18 -0.11 -0.59 16 16 C -0.07 -0.60 4.93 -104.62 -0.52 -1.12 16 17 C -0.11 -0.73 8.12 -39.58 -0.32 -1.05 16 18 C -0.12 -0.73 10.05 -39.59 -0.40 -1.13 16 19 C -0.11 -0.79 10.05 -39.59 -0.40 -1.19 16 20 C -0.11 -0.90 10.05 -39.58 -0.40 -1.29 16 21 C -0.11 -1.01 8.90 -39.59 -0.35 -1.36 16 22 C 0.11 0.81 6.74 -3.07 -0.02 0.79 16 23 N -0.73 -6.45 6.24 -59.14 -0.37 -6.82 16 24 C 0.53 6.38 8.43 -10.86 -0.09 6.29 16 25 O -0.53 -8.58 18.03 5.56 0.10 -8.48 16 26 C -0.14 -1.40 5.75 -26.74 -0.15 -1.55 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 29 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.40 3.82 8.10 -40.82 -0.33 3.49 16 35 H 0.12 0.60 7.29 -52.49 -0.38 0.22 16 36 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.13 1.36 6.07 -52.48 -0.32 1.04 16 40 H 0.09 0.59 7.33 -51.93 -0.38 0.21 16 41 H 0.09 0.43 6.48 -51.93 -0.34 0.10 16 42 H 0.41 3.01 8.96 -40.82 -0.37 2.64 16 43 H 0.11 0.90 7.32 -51.93 -0.38 0.52 16 44 H 0.12 1.53 6.91 -51.93 -0.36 1.17 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -35.00 361.26 -8.57 -43.57 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.17 Total: 2.86 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.52 Total: -9.20 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.15 Total: -42.10 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.19 Total: -17.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.00 -8.57 -43.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593976334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.061 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds