Wall clock time and date at job start Tue Mar 31 2020 10:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00121 * 2 1 4 4 H 1.48498 * 109.47389 * 90.00028 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00105 * 3 2 1 6 6 H 1.48494 * 109.47324 * 329.99868 * 3 2 1 7 7 C 1.37880 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99898 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00050 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47060 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47252 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47255 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99768 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00147 * 354.93826 * 13 12 11 15 15 C 1.50701 * 119.99856 * 174.94347 * 13 12 11 16 16 C 1.50707 * 110.85545 * 65.89005 * 15 13 12 17 17 C 1.38235 * 119.99709 * 185.80631 * 16 15 13 18 18 C 1.38234 * 119.99529 * 179.76504 * 17 16 15 19 19 C 1.38229 * 120.00065 * 0.51207 * 18 17 16 20 20 C 1.38236 * 120.00238 * 359.74430 * 19 18 17 21 21 C 1.38229 * 120.00025 * 6.08343 * 16 15 13 22 22 C 1.54481 * 110.96895 * 302.10234 * 15 13 12 23 23 N 1.46862 * 105.42228 * 267.28184 * 22 15 13 24 24 C 1.34422 * 111.31237 * 342.98468 * 23 22 15 25 25 O 1.21277 * 124.94269 * 180.37932 * 24 23 22 26 26 C 1.51289 * 110.11442 * 0.40731 * 24 23 22 27 27 H 0.97001 * 119.99537 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46871 * 300.00299 * 9 7 2 29 29 H 1.09000 * 109.46828 * 60.00222 * 9 7 2 30 30 H 1.09003 * 109.47444 * 300.00328 * 10 9 7 31 31 H 1.09005 * 109.47207 * 59.99879 * 10 9 7 32 32 H 1.09001 * 109.47163 * 299.99887 * 11 10 9 33 33 H 1.09000 * 109.47059 * 59.99856 * 11 10 9 34 34 H 0.97001 * 120.00035 * 359.97438 * 12 11 10 35 35 H 1.07999 * 119.99927 * 0.02562 * 17 16 15 36 36 H 1.08004 * 119.99897 * 180.22960 * 18 17 16 37 37 H 1.08005 * 119.99860 * 179.72116 * 19 18 17 38 38 H 1.08005 * 119.99971 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.00244 * 0.02562 * 21 16 15 40 40 H 1.08994 * 110.24571 * 26.29535 * 22 15 13 41 41 H 1.08993 * 110.24177 * 148.29782 * 22 15 13 42 42 H 0.97001 * 124.34109 * 162.97263 * 23 22 15 43 43 H 1.08997 * 110.48523 * 257.57767 * 26 24 23 44 44 H 1.08998 * 110.59307 * 134.99194 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0398 -4.0179 -0.0004 13 6 7.3649 -4.2642 0.0001 14 8 8.1523 -3.3463 -0.0917 15 6 7.8681 -5.6801 0.1146 16 6 7.4849 -6.4856 -1.1001 17 6 7.7467 -7.8423 -1.1405 18 6 7.3908 -8.5820 -2.2527 19 6 6.7828 -7.9631 -3.3288 20 6 6.5258 -6.6053 -3.2906 21 6 6.8769 -5.8666 -2.1762 22 6 7.3493 -6.3483 1.4072 23 7 8.3916 -6.1119 2.4145 24 6 9.5539 -5.7560 1.8406 25 8 10.5782 -5.5094 2.4412 26 6 9.3981 -5.7073 0.3366 27 1 -0.4849 0.8401 -0.0004 28 1 3.8745 -0.6808 -0.8905 29 1 3.8752 -0.6797 0.8895 30 1 3.6585 -3.1503 0.8903 31 1 3.6578 -3.1506 -0.8897 32 1 5.9149 -2.1229 -0.8899 33 1 5.9148 -2.1227 0.8901 34 1 5.4094 -4.7552 -0.0003 35 1 8.2254 -8.3251 -0.3014 36 1 7.5920 -9.6427 -2.2828 37 1 6.5089 -8.5402 -4.1997 38 1 6.0511 -6.1217 -4.1316 39 1 6.6768 -4.8057 -2.1467 40 1 6.4114 -5.8889 1.7190 41 1 7.2122 -7.4181 1.2499 42 1 8.2582 -6.2009 3.3712 43 1 9.8342 -6.5953 -0.1210 44 1 9.8584 -4.8058 -0.0675 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593976334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:24 Heat of formation + Delta-G solvation = -78.659637 kcal Electronic energy + Delta-G solvation = -26139.789855 eV Core-core repulsion = 22441.344765 eV Total energy + Delta-G solvation = -3698.445090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.54025 -40.31601 -39.75375 -37.51542 -37.02419 -35.21756 -34.03085 -33.20670 -31.80532 -30.51211 -29.43413 -28.23652 -25.59574 -24.25672 -23.40474 -22.61912 -22.20925 -21.73325 -20.62021 -19.05381 -18.77031 -18.61047 -17.45909 -17.11377 -16.62022 -16.50081 -16.27310 -16.18653 -15.81306 -15.49064 -15.37772 -14.93865 -14.78875 -14.66280 -14.48222 -14.11239 -13.93053 -13.79870 -13.75496 -13.54223 -12.92498 -12.76903 -12.71621 -12.64647 -12.17467 -11.97043 -11.91023 -11.79537 -11.60507 -11.33460 -11.16529 -11.00999 -10.76383 -10.26483 -10.13911 -9.80324 -9.67642 -8.29584 -6.32994 0.34013 0.50259 1.35967 1.37281 1.38123 1.45920 1.49012 1.98195 2.28654 2.35582 2.75963 3.06522 3.11032 3.30731 3.30843 3.65903 3.82979 4.07120 4.11810 4.16620 4.19311 4.33424 4.42035 4.45847 4.49217 4.55043 4.65274 4.73694 4.74874 4.87117 4.89364 5.03486 5.04190 5.15795 5.32173 5.48211 5.55420 5.55853 5.58841 5.65003 5.66659 5.68532 5.88061 6.08671 6.27360 6.41664 6.75334 7.06982 7.11606 7.31945 8.86705 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013690 B = 0.003230 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.760308 B = 8665.705662 C = 9983.108507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.249 1.249 6 H -0.285 1.285 7 C -0.528 4.528 8 H 0.040 0.960 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.126 3.874 12 N -0.708 5.708 13 C 0.525 3.475 14 O -0.573 6.573 15 C -0.041 4.041 16 C -0.077 4.077 17 C -0.104 4.104 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.128 4.128 22 C 0.114 3.886 23 N -0.720 5.720 24 C 0.519 3.481 25 O -0.579 6.579 26 C -0.134 4.134 27 H 0.266 0.734 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.415 0.585 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.422 0.578 43 H 0.141 0.859 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.924 -22.494 -3.257 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.172 1.172 6 H -0.211 1.211 7 C -0.566 4.566 8 H 0.058 0.942 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.002 3.998 12 N -0.360 5.360 13 C 0.312 3.688 14 O -0.452 6.452 15 C -0.045 4.045 16 C -0.078 4.078 17 C -0.122 4.122 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.010 4.010 23 N -0.375 5.375 24 C 0.306 3.694 25 O -0.460 6.460 26 C -0.174 4.174 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.253 0.747 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.147 0.853 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.145 0.855 42 H 0.263 0.737 43 H 0.159 0.841 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.842 -21.579 -3.106 27.549 hybrid contribution -0.647 1.126 0.355 1.347 sum 16.195 -20.452 -2.751 26.233 Atomic orbital electron populations 1.70051 1.08156 1.28069 1.52746 1.25941 0.95537 1.03267 0.94330 0.85749 0.79544 0.78822 0.79102 1.19394 1.17235 1.21107 1.21456 0.91843 0.93253 1.50068 0.94179 1.19469 0.94121 0.94792 0.96702 1.21470 0.91752 0.98033 1.02418 1.21345 0.94582 0.82366 1.01483 1.45968 1.06578 1.09517 1.73944 1.20405 0.82479 0.90755 0.75202 1.90722 1.56375 1.47379 1.50756 1.20465 0.96320 0.91240 0.96456 1.19029 1.01378 0.94251 0.93107 1.21168 0.99506 0.91861 0.99682 1.21479 0.97592 1.01259 0.92781 1.21539 0.97955 0.94384 0.99624 1.21336 0.99813 0.95091 0.97934 1.21200 0.99370 0.99765 0.94295 1.22537 0.91202 1.03224 0.84043 1.46203 1.11241 1.69421 1.10662 1.21074 0.82868 0.74359 0.91081 1.90733 1.32384 1.51936 1.70903 1.22440 0.94385 1.07278 0.93267 0.92542 0.96233 0.96370 0.91409 0.91516 0.92355 0.92369 0.74732 0.83235 0.83064 0.84009 0.85344 0.87543 0.88094 0.85502 0.73709 0.84112 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 2 C 0.01 0.36 5.47 84.66 0.46 0.82 16 3 Si 0.94 43.85 27.47 68.60 1.88 45.74 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 6 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.53 -29.18 9.66 25.60 0.25 -28.94 16 8 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.32 5.27 30.59 0.16 -3.16 16 11 C 0.13 3.69 5.68 86.38 0.49 4.18 16 12 N -0.71 -16.08 4.17 -463.05 -1.93 -18.01 16 13 C 0.53 12.99 5.04 87.66 0.44 13.43 16 14 O -0.57 -19.60 15.52 -3.04 -0.05 -19.64 16 15 C -0.04 -0.68 0.69 -52.61 -0.04 -0.72 16 16 C -0.08 -1.08 4.93 -19.86 -0.10 -1.18 16 17 C -0.10 -0.96 8.12 22.27 0.18 -0.78 16 18 C -0.11 -0.97 10.05 22.27 0.22 -0.74 16 19 C -0.12 -1.28 10.05 22.27 0.22 -1.05 16 20 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 21 C -0.13 -2.24 8.90 22.27 0.20 -2.04 16 22 C 0.11 1.24 6.74 86.81 0.59 1.83 16 23 N -0.72 -11.12 6.24 -459.59 -2.87 -13.99 16 24 C 0.52 12.13 8.43 87.90 0.74 12.88 16 25 O -0.58 -19.03 18.03 -3.02 -0.05 -19.08 16 26 C -0.13 -2.59 5.75 30.59 0.18 -2.41 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 29 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.42 7.15 8.10 -92.71 -0.75 6.40 16 35 H 0.15 0.63 7.29 -2.91 -0.02 0.61 16 36 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 37 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 38 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.11 2.28 6.07 -2.91 -0.02 2.26 16 40 H 0.10 0.97 7.33 -2.39 -0.02 0.95 16 41 H 0.13 0.57 6.48 -2.39 -0.02 0.56 16 42 H 0.42 5.24 8.96 -92.71 -0.83 4.41 16 43 H 0.14 1.89 7.32 -2.39 -0.02 1.87 16 44 H 0.10 2.50 6.91 -2.39 -0.02 2.48 16 Total: -1.00 -78.84 361.26 1.03 -77.81 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.60 Total: 15.27 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.34 Total: -9.94 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -4.50 Total: -90.16 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.10 Total: -38.72 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.74 kcal Total: -78.84 1.03 -77.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593976334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.849 kcal (2) G-P(sol) polarization free energy of solvation -78.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds