Wall clock time and date at job start Tue Mar 31 2020 10:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48501 * 109.46673 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46725 * 299.99953 * 3 2 1 6 6 H 1.48499 * 109.46925 * 59.99880 * 3 2 1 7 7 C 1.37875 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99749 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47366 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47317 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47201 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00104 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99626 * 4.56355 * 13 12 11 15 15 C 1.50697 * 120.00187 * 184.55619 * 13 12 11 16 16 C 1.50697 * 110.85724 * 66.61165 * 15 13 12 17 17 C 1.38233 * 119.99989 * 182.17126 * 16 15 13 18 18 C 1.38236 * 119.99895 * 180.27955 * 17 16 15 19 19 C 1.38236 * 119.99746 * 359.49037 * 18 17 16 20 20 C 1.38227 * 120.00268 * 0.51332 * 19 18 17 21 21 C 1.38232 * 119.99777 * 359.74149 * 20 19 18 22 22 C 1.54481 * 110.96820 * 190.40532 * 15 13 12 23 23 N 1.46761 * 105.47255 * 92.74219 * 22 15 13 24 24 C 1.34409 * 111.30371 * 17.01227 * 23 22 15 25 25 O 1.21286 * 124.94553 * 179.55995 * 24 23 22 26 26 C 1.51279 * 110.11886 * 359.59537 * 24 23 22 27 27 H 0.96998 * 119.99584 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46924 * 59.99895 * 9 7 2 29 29 H 1.09001 * 109.47202 * 300.00551 * 9 7 2 30 30 H 1.09005 * 109.47340 * 59.99959 * 10 9 7 31 31 H 1.09001 * 109.47254 * 300.00329 * 10 9 7 32 32 H 1.09004 * 109.47054 * 60.00216 * 11 10 9 33 33 H 1.08994 * 109.47268 * 299.99966 * 11 10 9 34 34 H 0.97000 * 119.99833 * 0.02562 * 12 11 10 35 35 H 1.07996 * 120.00085 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.99978 * 179.72723 * 18 17 16 37 37 H 1.08006 * 119.99984 * 180.23255 * 19 18 17 38 38 H 1.07998 * 120.00203 * 179.72172 * 20 19 18 39 39 H 1.08001 * 119.99946 * 179.97438 * 21 20 19 40 40 H 1.09003 * 110.23940 * 211.73750 * 22 15 13 41 41 H 1.08996 * 110.24591 * 333.73573 * 22 15 13 42 42 H 0.97009 * 124.34558 * 197.03570 * 23 22 15 43 43 H 1.09002 * 110.48855 * 225.07217 * 26 24 23 44 44 H 1.09003 * 110.48868 * 102.42427 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0018 13 6 1.9831 -7.3713 -0.0019 14 8 0.7938 -7.5940 -0.0851 15 6 2.9585 -8.5154 0.1011 16 6 3.6336 -8.5252 1.4484 17 6 4.6005 -9.4721 1.7301 18 6 5.2156 -9.4847 2.9680 19 6 4.8713 -8.5439 3.9205 20 6 3.9043 -7.5972 3.6389 21 6 3.2854 -7.5878 2.4028 22 6 2.2594 -9.8646 -0.1769 23 7 2.4380 -10.1095 -1.6129 24 6 3.4135 -9.3377 -2.1223 25 8 3.7713 -9.3449 -3.2811 26 6 4.0009 -8.4594 -1.0397 27 1 -0.4849 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8720 -3.6044 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 0.8539 -5.0446 -0.8914 33 1 0.8534 -5.0451 0.8885 34 1 3.3860 -5.9234 -0.0014 35 1 4.8725 -10.2045 0.9845 36 1 5.9680 -10.2272 3.1896 37 1 5.3545 -8.5514 4.8864 38 1 3.6320 -6.8650 4.3846 39 1 2.5296 -6.8484 2.1829 40 1 2.7294 -10.6593 0.4025 41 1 1.1989 -9.7969 0.0652 42 1 1.9185 -10.7463 -2.1283 43 1 4.1180 -7.4372 -1.3995 44 1 4.9576 -8.8581 -0.7022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593976335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:28 Heat of formation + Delta-G solvation = -56.964633 kcal Electronic energy + Delta-G solvation = -26123.550439 eV Core-core repulsion = 22426.046115 eV Total energy + Delta-G solvation = -3697.504324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67053 -39.36663 -38.93312 -36.54694 -35.50891 -33.68282 -33.01535 -31.38753 -31.02745 -29.87466 -27.80475 -26.93361 -24.45184 -23.11340 -22.76058 -21.71621 -20.90251 -20.70549 -19.54995 -18.02034 -17.83165 -16.64288 -16.45534 -15.89248 -15.59848 -15.51221 -15.21059 -15.03900 -14.74437 -14.47529 -14.12608 -13.96475 -13.88669 -13.64657 -13.35128 -13.09751 -12.94263 -12.33161 -12.21426 -12.02100 -11.87718 -11.77985 -11.48803 -11.36286 -10.94543 -10.79250 -10.60363 -10.20751 -10.02015 -9.92378 -9.46657 -9.39918 -9.22498 -9.14134 -9.08180 -8.90737 -8.40221 -6.04694 -4.07818 0.93757 1.08670 2.32210 2.45607 3.02182 3.12192 3.28403 3.36202 3.38405 3.39659 3.87346 4.06415 4.13850 4.41950 4.50192 4.54156 4.69830 4.72599 4.89281 5.05935 5.12583 5.24243 5.25187 5.31420 5.33763 5.42077 5.61757 5.62827 5.68472 5.72846 6.07451 6.12842 6.18861 6.24143 6.33045 6.46597 6.52384 6.64471 6.71288 6.73295 6.93862 7.49335 7.59881 7.71416 7.93707 7.96110 8.13677 8.34810 8.98990 9.56780 11.06587 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003120 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.374162 B = 8973.388821 C =10159.721054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.720 5.720 13 C 0.526 3.474 14 O -0.530 6.530 15 C -0.053 4.053 16 C -0.072 4.072 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.107 4.107 22 C 0.121 3.879 23 N -0.726 5.726 24 C 0.522 3.478 25 O -0.530 6.530 26 C -0.146 4.146 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.414 0.586 43 H 0.110 0.890 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.022 -23.112 6.636 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.371 5.371 13 C 0.310 3.690 14 O -0.406 6.406 15 C -0.057 4.057 16 C -0.073 4.073 17 C -0.128 4.128 18 C -0.135 4.135 19 C -0.133 4.133 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.004 4.004 23 N -0.382 5.382 24 C 0.307 3.693 25 O -0.406 6.406 26 C -0.187 4.187 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.235 0.765 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.253 0.747 43 H 0.129 0.871 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.244 -23.045 6.034 25.553 hybrid contribution 0.594 0.866 -0.082 1.054 sum 9.838 -22.179 5.952 24.982 Atomic orbital electron populations 1.69977 1.06063 1.26609 1.50608 1.25030 0.94852 0.99328 0.95240 0.86531 0.80071 0.83747 0.77622 1.19730 1.20979 1.20996 1.21230 0.93034 0.90890 1.50878 0.92573 1.19029 0.93817 0.90855 0.97660 1.21900 0.99801 0.93182 1.01037 1.21727 0.91795 0.84970 1.02222 1.46261 1.11144 1.05640 1.74039 1.19780 0.88798 0.83830 0.76604 1.90719 1.16402 1.84392 1.49081 1.20603 0.95210 0.95660 0.94179 1.19129 0.97624 0.97454 0.93105 1.20910 0.96256 0.98329 0.97305 1.21112 0.99969 0.99031 0.93418 1.21247 0.97479 0.95122 0.99485 1.21216 0.96215 0.98686 0.96748 1.21336 0.99736 0.98182 0.93306 1.22134 1.03337 0.93853 0.81110 1.46149 1.38269 1.42915 1.10845 1.20705 0.79542 0.80550 0.88469 1.90782 1.63457 1.68427 1.17933 1.22617 0.99348 1.03099 0.93601 0.92966 0.96263 0.96280 0.92601 0.92617 0.91487 0.91545 0.76499 0.85803 0.85785 0.85878 0.85508 0.85186 0.89812 0.87854 0.74692 0.87122 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.26 5.27 -26.74 -0.14 -2.40 16 11 C 0.12 1.89 5.68 -4.04 -0.02 1.87 16 12 N -0.72 -9.41 4.09 -60.29 -0.25 -9.66 16 13 C 0.53 6.96 5.13 -10.99 -0.06 6.91 16 14 O -0.53 -8.88 15.52 5.55 0.09 -8.80 16 15 C -0.05 -0.51 0.70 -155.18 -0.11 -0.62 16 16 C -0.07 -0.63 4.94 -104.63 -0.52 -1.15 16 17 C -0.11 -0.77 8.03 -39.58 -0.32 -1.09 16 18 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 19 C -0.12 -0.84 10.05 -39.59 -0.40 -1.24 16 20 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 21 C -0.11 -1.05 8.97 -39.58 -0.36 -1.41 16 22 C 0.12 1.03 6.68 -3.12 -0.02 1.01 16 23 N -0.73 -6.86 6.24 -59.21 -0.37 -7.23 16 24 C 0.52 6.22 8.43 -10.87 -0.09 6.13 16 25 O -0.53 -8.48 18.03 5.55 0.10 -8.38 16 26 C -0.15 -1.36 5.77 -26.74 -0.15 -1.51 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.40 4.38 7.81 -40.82 -0.32 4.06 16 35 H 0.12 0.65 7.35 -52.49 -0.39 0.26 16 36 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 37 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 1.47 5.90 -52.49 -0.31 1.16 16 40 H 0.08 0.52 7.03 -51.93 -0.37 0.15 16 41 H 0.10 1.01 6.91 -51.93 -0.36 0.65 16 42 H 0.41 3.28 8.96 -40.82 -0.37 2.91 16 43 H 0.11 1.05 7.13 -51.93 -0.37 0.68 16 44 H 0.12 0.83 6.76 -51.93 -0.35 0.48 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -34.32 364.24 -8.93 -43.25 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.17 Total: 3.55 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -3.53 Total: -8.70 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.12 Total: -42.67 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.19 Total: -17.17 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.32 -8.93 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593976335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.717 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds