Wall clock time and date at job start Tue Mar 31 2020 10:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48501 * 109.46673 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46725 * 299.99953 * 3 2 1 6 6 H 1.48499 * 109.46925 * 59.99880 * 3 2 1 7 7 C 1.37875 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99749 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47366 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47317 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47201 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00104 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99626 * 4.56355 * 13 12 11 15 15 C 1.50697 * 120.00187 * 184.55619 * 13 12 11 16 16 C 1.50697 * 110.85724 * 66.61165 * 15 13 12 17 17 C 1.38233 * 119.99989 * 182.17126 * 16 15 13 18 18 C 1.38236 * 119.99895 * 180.27955 * 17 16 15 19 19 C 1.38236 * 119.99746 * 359.49037 * 18 17 16 20 20 C 1.38227 * 120.00268 * 0.51332 * 19 18 17 21 21 C 1.38232 * 119.99777 * 359.74149 * 20 19 18 22 22 C 1.54481 * 110.96820 * 190.40532 * 15 13 12 23 23 N 1.46761 * 105.47255 * 92.74219 * 22 15 13 24 24 C 1.34409 * 111.30371 * 17.01227 * 23 22 15 25 25 O 1.21286 * 124.94553 * 179.55995 * 24 23 22 26 26 C 1.51279 * 110.11886 * 359.59537 * 24 23 22 27 27 H 0.96998 * 119.99584 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46924 * 59.99895 * 9 7 2 29 29 H 1.09001 * 109.47202 * 300.00551 * 9 7 2 30 30 H 1.09005 * 109.47340 * 59.99959 * 10 9 7 31 31 H 1.09001 * 109.47254 * 300.00329 * 10 9 7 32 32 H 1.09004 * 109.47054 * 60.00216 * 11 10 9 33 33 H 1.08994 * 109.47268 * 299.99966 * 11 10 9 34 34 H 0.97000 * 119.99833 * 0.02562 * 12 11 10 35 35 H 1.07996 * 120.00085 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.99978 * 179.72723 * 18 17 16 37 37 H 1.08006 * 119.99984 * 180.23255 * 19 18 17 38 38 H 1.07998 * 120.00203 * 179.72172 * 20 19 18 39 39 H 1.08001 * 119.99946 * 179.97438 * 21 20 19 40 40 H 1.09003 * 110.23940 * 211.73750 * 22 15 13 41 41 H 1.08996 * 110.24591 * 333.73573 * 22 15 13 42 42 H 0.97009 * 124.34558 * 197.03570 * 23 22 15 43 43 H 1.09002 * 110.48855 * 225.07217 * 26 24 23 44 44 H 1.09003 * 110.48868 * 102.42427 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0018 13 6 1.9831 -7.3713 -0.0019 14 8 0.7938 -7.5940 -0.0851 15 6 2.9585 -8.5154 0.1011 16 6 3.6336 -8.5252 1.4484 17 6 4.6005 -9.4721 1.7301 18 6 5.2156 -9.4847 2.9680 19 6 4.8713 -8.5439 3.9205 20 6 3.9043 -7.5972 3.6389 21 6 3.2854 -7.5878 2.4028 22 6 2.2594 -9.8646 -0.1769 23 7 2.4380 -10.1095 -1.6129 24 6 3.4135 -9.3377 -2.1223 25 8 3.7713 -9.3449 -3.2811 26 6 4.0009 -8.4594 -1.0397 27 1 -0.4849 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8720 -3.6044 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 0.8539 -5.0446 -0.8914 33 1 0.8534 -5.0451 0.8885 34 1 3.3860 -5.9234 -0.0014 35 1 4.8725 -10.2045 0.9845 36 1 5.9680 -10.2272 3.1896 37 1 5.3545 -8.5514 4.8864 38 1 3.6320 -6.8650 4.3846 39 1 2.5296 -6.8484 2.1829 40 1 2.7294 -10.6593 0.4025 41 1 1.1989 -9.7969 0.0652 42 1 1.9185 -10.7463 -2.1283 43 1 4.1180 -7.4372 -1.3995 44 1 4.9576 -8.8581 -0.7022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593976335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:28 Heat of formation + Delta-G solvation = -80.609691 kcal Electronic energy + Delta-G solvation = -26124.575766 eV Core-core repulsion = 22426.046115 eV Total energy + Delta-G solvation = -3698.529651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.54341 -40.31987 -39.73820 -37.54558 -36.90963 -35.30829 -34.11829 -32.85810 -31.79111 -30.59304 -28.78152 -28.46593 -25.73175 -24.33303 -23.47277 -22.60515 -22.35728 -21.69946 -20.61284 -18.90094 -18.68871 -18.50872 -17.37300 -17.10209 -16.59736 -16.50723 -16.38569 -16.27252 -15.79316 -15.56130 -15.27535 -14.92570 -14.82494 -14.37359 -14.22972 -14.10671 -13.84070 -13.79959 -13.72364 -13.44579 -13.05696 -12.79435 -12.68424 -12.56319 -12.36227 -12.14307 -11.94937 -11.69665 -11.60288 -11.23943 -11.15692 -10.90662 -10.56676 -10.24055 -10.16201 -9.79786 -9.67225 -8.20339 -6.31537 0.34700 0.51029 1.39544 1.41198 1.41710 1.42168 1.54677 1.98493 2.31717 2.41751 2.76581 3.09142 3.13784 3.28477 3.36491 3.61577 3.80530 4.11852 4.12765 4.17179 4.19331 4.34369 4.39655 4.51852 4.54276 4.56625 4.66028 4.68702 4.75516 4.91453 4.94262 5.05250 5.14912 5.16703 5.35133 5.51139 5.56753 5.59840 5.67239 5.68390 5.69403 5.83463 5.89942 6.09511 6.21341 6.40595 6.86064 7.06180 7.10891 7.38247 8.91901 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003120 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.374162 B = 8973.388821 C =10159.721054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.130 3.870 12 N -0.710 5.710 13 C 0.524 3.476 14 O -0.569 6.569 15 C -0.040 4.040 16 C -0.076 4.076 17 C -0.104 4.104 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.128 4.128 22 C 0.121 3.879 23 N -0.717 5.717 24 C 0.514 3.486 25 O -0.578 6.578 26 C -0.140 4.140 27 H 0.263 0.737 28 H -0.010 1.010 29 H -0.005 1.005 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.414 0.586 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.420 0.580 43 H 0.108 0.892 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.050 -24.522 7.750 28.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.140 4.140 11 C 0.006 3.994 12 N -0.362 5.362 13 C 0.310 3.690 14 O -0.448 6.448 15 C -0.044 4.044 16 C -0.077 4.077 17 C -0.122 4.122 18 C -0.131 4.131 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.003 4.003 23 N -0.372 5.372 24 C 0.301 3.699 25 O -0.458 6.458 26 C -0.179 4.179 27 H 0.072 0.928 28 H 0.008 0.992 29 H 0.013 0.987 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.251 0.749 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.260 0.740 43 H 0.126 0.874 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.291 -24.482 7.178 28.318 hybrid contribution -0.405 1.258 -0.361 1.370 sum 11.886 -23.223 6.817 26.964 Atomic orbital electron populations 1.70118 1.07910 1.27703 1.51790 1.26007 0.95729 1.03500 0.94804 0.85386 0.79239 0.78730 0.77615 1.18200 1.20721 1.20478 1.21703 0.93730 0.92009 1.50291 0.91592 1.18935 0.94404 0.92928 0.95077 1.21598 0.98451 0.91822 1.02137 1.21271 0.91834 0.85334 1.00911 1.46024 1.11239 1.05022 1.73888 1.20457 0.89004 0.84419 0.75129 1.90703 1.18407 1.84984 1.50754 1.20469 0.94413 0.94208 0.95286 1.19003 0.98470 0.98180 0.91997 1.21154 0.95064 0.97837 0.98108 1.21476 0.99880 0.98956 0.92793 1.21533 0.96732 0.94538 1.00627 1.21330 0.96942 0.99557 0.96417 1.21236 1.00192 0.98702 0.94525 1.22282 1.02974 0.94294 0.80721 1.46193 1.37379 1.42231 1.11372 1.21123 0.79712 0.80798 0.88254 1.90757 1.65145 1.70012 1.19914 1.22665 1.00317 1.02664 0.92298 0.92835 0.99162 0.98708 0.91078 0.91709 0.93395 0.92488 0.74933 0.83274 0.83000 0.83962 0.85453 0.87583 0.86238 0.89082 0.73968 0.87383 0.83027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.25 4.97 29.85 0.15 1.39 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.13 4.43 5.68 86.38 0.49 4.92 16 12 N -0.71 -18.62 4.09 -463.06 -1.89 -20.52 16 13 C 0.52 13.89 5.13 87.66 0.45 14.34 16 14 O -0.57 -19.66 15.52 -3.04 -0.05 -19.71 16 15 C -0.04 -0.70 0.70 -52.62 -0.04 -0.74 16 16 C -0.08 -1.14 4.94 -19.87 -0.10 -1.23 16 17 C -0.10 -1.02 8.03 22.27 0.18 -0.84 16 18 C -0.11 -1.02 10.05 22.27 0.22 -0.79 16 19 C -0.12 -1.34 10.05 22.27 0.22 -1.11 16 20 C -0.12 -1.98 10.05 22.27 0.22 -1.75 16 21 C -0.13 -2.40 8.97 22.27 0.20 -2.20 16 22 C 0.12 1.84 6.68 86.83 0.58 2.42 16 23 N -0.72 -12.53 6.24 -459.82 -2.87 -15.40 16 24 C 0.51 11.65 8.43 87.90 0.74 12.39 16 25 O -0.58 -18.37 18.03 -3.05 -0.05 -18.42 16 26 C -0.14 -2.28 5.77 30.59 0.18 -2.10 16 27 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 28 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 29 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.41 8.67 7.81 -92.71 -0.72 7.94 16 35 H 0.15 0.73 7.35 -2.91 -0.02 0.71 16 36 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.11 2.45 5.90 -2.91 -0.02 2.44 16 40 H 0.12 1.02 7.03 -2.39 -0.02 1.01 16 41 H 0.09 1.70 6.91 -2.39 -0.02 1.68 16 42 H 0.42 6.21 8.96 -92.70 -0.83 5.38 16 43 H 0.11 1.88 7.13 -2.39 -0.02 1.86 16 44 H 0.15 1.51 6.76 -2.39 -0.02 1.50 16 Total: -1.00 -77.05 364.24 1.29 -75.77 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.52 Total: 17.55 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.36 Total: -8.35 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -4.48 Total: -92.52 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.10 Total: -38.13 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -77.05 1.29 -75.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593976335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.842 kcal (2) G-P(sol) polarization free energy of solvation -77.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds