Wall clock time and date at job start Tue Mar 31 2020 10:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48497 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47129 * 300.00280 * 3 2 1 6 6 H 1.48494 * 109.46773 * 60.00216 * 3 2 1 7 7 C 1.37876 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00153 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50094 * 60.08508 * 9 7 2 11 11 C 1.53109 * 109.50597 * 300.00510 * 9 7 2 12 12 C 1.53116 * 109.16475 * 182.40266 * 11 9 7 13 13 C 1.53041 * 109.27660 * 57.65139 * 12 11 9 14 14 N 1.46843 * 109.52516 * 300.82470 * 13 12 11 15 15 C 1.46900 * 110.99975 * 185.83885 * 14 13 12 16 16 C 1.50702 * 109.47379 * 66.04452 * 15 14 13 17 17 C 1.32567 * 119.99800 * 124.99836 * 16 15 14 18 18 C 1.47815 * 119.99605 * 180.02562 * 17 16 15 19 19 C 1.39548 * 120.14313 * 15.73725 * 18 17 16 20 20 C 1.37954 * 119.86092 * 179.97438 * 19 18 17 21 21 C 1.38368 * 120.13801 * 0.02562 * 20 19 18 22 22 C 1.38328 * 120.28525 * 359.97393 * 21 20 19 23 23 C 1.37989 * 120.14240 * 0.28094 * 22 21 20 24 24 N 1.48009 * 120.07483 * 179.74096 * 23 22 21 25 25 O 1.21799 * 119.99648 * 37.61250 * 24 23 22 26 26 O 1.21795 * 120.00351 * 217.61351 * 24 23 22 27 27 C 1.46847 * 111.20066 * 61.74118 * 14 13 12 28 28 H 0.97000 * 119.99802 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.52268 * 62.49650 * 11 9 7 30 30 H 1.09002 * 109.57766 * 302.33861 * 11 9 7 31 31 H 1.08998 * 109.50555 * 297.71369 * 12 11 9 32 32 H 1.09001 * 109.50738 * 177.59070 * 12 11 9 33 33 H 1.09007 * 109.46224 * 180.80584 * 13 12 11 34 34 H 1.09005 * 109.45889 * 60.84172 * 13 12 11 35 35 H 1.09002 * 109.47247 * 306.04153 * 15 14 13 36 36 H 1.08998 * 109.46903 * 186.04528 * 15 14 13 37 37 H 1.08003 * 119.99754 * 305.00155 * 16 15 14 38 38 H 1.07998 * 119.99941 * 359.97438 * 17 16 15 39 39 H 1.08002 * 120.07212 * 0.02562 * 19 18 17 40 40 H 1.07995 * 119.93523 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.86295 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.92992 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.46010 * 58.27407 * 27 14 13 44 44 H 1.08994 * 109.46458 * 178.24180 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6250 -2.5578 -0.8909 11 6 0.3708 -2.5813 1.2496 12 6 -0.3449 -3.9347 1.2724 13 6 0.6952 -5.0569 1.2398 14 7 1.5111 -4.9347 0.0250 15 6 2.4286 -6.0741 -0.1097 16 6 1.6343 -7.3346 -0.3365 17 6 1.8838 -8.0939 -1.3941 18 6 1.1044 -9.3300 -1.6168 19 6 -0.0907 -9.5387 -0.9271 20 6 -0.8137 -10.6941 -1.1398 21 6 -0.3561 -11.6453 -2.0345 22 6 0.8277 -11.4444 -2.7213 23 6 1.5630 -10.2954 -2.5136 24 7 2.8323 -10.0846 -3.2451 25 8 2.9329 -10.4412 -4.4054 26 8 3.7762 -9.5547 -2.6869 27 6 2.2449 -3.6629 0.0038 28 1 -0.4850 0.8401 0.0004 29 1 -0.3671 -1.7793 1.2289 30 1 0.9913 -2.4824 2.1403 31 1 -0.9960 -4.0167 0.4021 32 1 -0.9400 -4.0165 2.1819 33 1 0.1884 -6.0220 1.2415 34 1 1.3373 -4.9825 2.1176 35 1 3.0185 -6.1753 0.8013 36 1 3.0939 -5.9066 -0.9566 37 1 0.8618 -7.6192 0.3626 38 1 2.6560 -7.8090 -2.0934 39 1 -0.4492 -8.7969 -0.2288 40 1 -1.7389 -10.8567 -0.6070 41 1 -0.9254 -12.5484 -2.1973 42 1 1.1794 -12.1905 -3.4187 43 1 2.8797 -3.5951 0.8873 44 1 2.8636 -3.6155 -0.8923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597173571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:07 Heat of formation + Delta-G solvation = 36.351743 kcal Electronic energy + Delta-G solvation = -25529.943881 eV Core-core repulsion = 21836.486059 eV Total energy + Delta-G solvation = -3693.457823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.33721 -39.78003 -38.41254 -36.70752 -35.37902 -33.51676 -32.35765 -31.90541 -30.29337 -29.75403 -26.92314 -25.67496 -25.00991 -23.70859 -22.55221 -21.80863 -21.46357 -19.48716 -19.33421 -18.79088 -18.65887 -17.69243 -16.94382 -16.37326 -15.60369 -15.26296 -15.13298 -14.75252 -14.57875 -14.22548 -13.74946 -13.53469 -13.27748 -13.14390 -12.76500 -12.46839 -12.32554 -12.15064 -11.81781 -11.71270 -11.54593 -11.24473 -11.23377 -11.04678 -10.97080 -10.71697 -10.66961 -10.55893 -10.13270 -9.94469 -9.87621 -9.51311 -9.13250 -8.74612 -8.67374 -8.32551 -7.74735 -5.99209 -4.05314 -0.29671 0.37629 0.95191 1.24471 2.07301 3.08438 3.29274 3.37537 3.41310 3.92658 4.04673 4.28673 4.38755 4.50730 4.56862 4.59340 4.77116 4.85902 5.13506 5.28709 5.31114 5.43347 5.45244 5.50436 5.60891 5.70890 5.75532 5.81451 5.91478 5.98863 6.19963 6.27493 6.33875 6.34923 6.45600 6.46282 6.64791 6.70151 6.91667 7.16772 7.34279 7.49394 7.57226 7.70361 7.75836 8.05437 8.14731 8.45628 8.98884 9.59275 11.06819 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.002555 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.885732 B =10955.807346 C =11788.877448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.073 3.927 16 C -0.071 4.071 17 C -0.163 4.163 18 C 0.029 3.971 19 C -0.118 4.118 20 C -0.067 4.067 21 C -0.126 4.126 22 C -0.058 4.058 23 C -0.042 4.042 24 N 0.027 4.973 25 O -0.163 6.163 26 O -0.144 6.144 27 C 0.067 3.933 28 H 0.259 0.741 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.021 0.979 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -23.561 -0.052 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.068 4.068 14 N -0.259 5.259 15 C -0.055 4.055 16 C -0.090 4.090 17 C -0.182 4.182 18 C 0.027 3.973 19 C -0.137 4.137 20 C -0.085 4.085 21 C -0.145 4.145 22 C -0.077 4.077 23 C -0.124 4.124 24 N 0.548 4.452 25 O -0.378 6.378 26 O -0.364 6.364 27 C -0.059 4.059 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.151 0.849 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.039 0.961 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.637 -23.534 -0.112 23.813 hybrid contribution 1.296 0.905 0.489 1.655 sum -2.341 -22.629 0.377 22.753 Atomic orbital electron populations 1.69897 1.05851 1.26231 1.50761 1.24935 0.94834 0.98991 0.95104 0.86567 0.80162 0.83909 0.77542 1.19823 1.21025 1.21103 1.21182 0.92895 0.90616 1.50605 0.92743 1.18666 0.92595 0.90254 0.94863 0.94753 1.21660 1.00094 0.94696 0.98497 1.21678 0.97146 0.96520 1.00182 1.22096 0.95807 0.98663 0.90241 1.62105 1.23776 1.01913 1.38084 1.21243 0.93979 0.88873 1.01378 1.23509 0.96169 0.93681 0.95604 1.21686 1.01783 0.93750 1.00934 1.18924 0.94272 0.92870 0.91195 1.21456 0.93457 0.98756 1.00004 1.21524 0.99166 0.92422 0.95426 1.21188 0.95462 1.00666 0.97188 1.20883 0.93725 0.95074 0.97992 1.21098 0.88557 1.00294 1.02439 1.43557 1.02394 0.98438 1.00790 1.94544 1.89409 1.53154 1.00703 1.94553 1.29937 1.41834 1.70059 1.22354 0.96509 0.88075 0.99012 0.93110 0.89040 0.95116 0.92109 0.93506 0.92588 0.95694 0.93532 0.89897 0.86691 0.84856 0.83378 0.83948 0.83770 0.83636 0.96053 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 11.35 55.43 0.63 -24.51 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.05 1.35 2.26 -91.70 -0.21 1.15 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.57 5.02 -26.61 -0.13 -2.71 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C 0.06 0.98 5.31 -3.83 -0.02 0.96 16 14 N -0.53 -9.41 4.65 -236.11 -1.10 -10.50 16 15 C 0.07 1.04 5.41 -4.97 -0.03 1.01 16 16 C -0.07 -0.86 8.56 -36.21 -0.31 -1.17 16 17 C -0.16 -2.01 8.49 -37.57 -0.32 -2.33 16 18 C 0.03 0.31 5.83 -105.01 -0.61 -0.30 16 19 C -0.12 -0.98 9.34 -39.20 -0.37 -1.34 16 20 C -0.07 -0.40 10.03 -39.64 -0.40 -0.80 16 21 C -0.13 -0.75 10.04 -39.50 -0.40 -1.14 16 22 C -0.06 -0.47 9.66 -39.64 -0.38 -0.86 16 23 C -0.04 -0.47 6.51 -79.57 -0.52 -0.99 16 24 N 0.03 0.36 4.26 34.15 0.15 0.50 16 25 O -0.16 -2.29 18.95 -29.46 -0.56 -2.85 16 26 O -0.14 -2.10 16.58 -29.46 -0.49 -2.59 16 27 C 0.07 1.39 4.68 -3.83 -0.02 1.37 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.76 6.43 -51.92 -0.33 0.42 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.08 1.19 7.65 -51.93 -0.40 0.80 16 37 H 0.12 1.18 5.10 -52.48 -0.27 0.91 16 38 H 0.13 1.81 6.19 -52.49 -0.32 1.49 16 39 H 0.15 1.04 6.46 -52.49 -0.34 0.70 16 40 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 41 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 42 H 0.15 0.97 8.01 -52.48 -0.42 0.55 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -30.17 360.88 -11.38 -41.55 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.16 Total: -1.05 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -4.26 Total: -22.13 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: -0.32 Total: -34.51 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -1.05 Total: -5.44 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.17 -11.38 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.900 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds