Wall clock time and date at job start Tue Mar 31 2020 10:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48497 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47129 * 300.00280 * 3 2 1 6 6 H 1.48494 * 109.46773 * 60.00216 * 3 2 1 7 7 C 1.37876 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00153 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50094 * 60.08508 * 9 7 2 11 11 C 1.53109 * 109.50597 * 300.00510 * 9 7 2 12 12 C 1.53116 * 109.16475 * 182.40266 * 11 9 7 13 13 C 1.53041 * 109.27660 * 57.65139 * 12 11 9 14 14 N 1.46843 * 109.52516 * 300.82470 * 13 12 11 15 15 C 1.46900 * 110.99975 * 185.83885 * 14 13 12 16 16 C 1.50702 * 109.47379 * 66.04452 * 15 14 13 17 17 C 1.32567 * 119.99800 * 124.99836 * 16 15 14 18 18 C 1.47815 * 119.99605 * 180.02562 * 17 16 15 19 19 C 1.39548 * 120.14313 * 15.73725 * 18 17 16 20 20 C 1.37954 * 119.86092 * 179.97438 * 19 18 17 21 21 C 1.38368 * 120.13801 * 0.02562 * 20 19 18 22 22 C 1.38328 * 120.28525 * 359.97393 * 21 20 19 23 23 C 1.37989 * 120.14240 * 0.28094 * 22 21 20 24 24 N 1.48009 * 120.07483 * 179.74096 * 23 22 21 25 25 O 1.21799 * 119.99648 * 37.61250 * 24 23 22 26 26 O 1.21795 * 120.00351 * 217.61351 * 24 23 22 27 27 C 1.46847 * 111.20066 * 61.74118 * 14 13 12 28 28 H 0.97000 * 119.99802 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.52268 * 62.49650 * 11 9 7 30 30 H 1.09002 * 109.57766 * 302.33861 * 11 9 7 31 31 H 1.08998 * 109.50555 * 297.71369 * 12 11 9 32 32 H 1.09001 * 109.50738 * 177.59070 * 12 11 9 33 33 H 1.09007 * 109.46224 * 180.80584 * 13 12 11 34 34 H 1.09005 * 109.45889 * 60.84172 * 13 12 11 35 35 H 1.09002 * 109.47247 * 306.04153 * 15 14 13 36 36 H 1.08998 * 109.46903 * 186.04528 * 15 14 13 37 37 H 1.08003 * 119.99754 * 305.00155 * 16 15 14 38 38 H 1.07998 * 119.99941 * 359.97438 * 17 16 15 39 39 H 1.08002 * 120.07212 * 0.02562 * 19 18 17 40 40 H 1.07995 * 119.93523 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.86295 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.92992 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.46010 * 58.27407 * 27 14 13 44 44 H 1.08994 * 109.46458 * 178.24180 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6250 -2.5578 -0.8909 11 6 0.3708 -2.5813 1.2496 12 6 -0.3449 -3.9347 1.2724 13 6 0.6952 -5.0569 1.2398 14 7 1.5111 -4.9347 0.0250 15 6 2.4286 -6.0741 -0.1097 16 6 1.6343 -7.3346 -0.3365 17 6 1.8838 -8.0939 -1.3941 18 6 1.1044 -9.3300 -1.6168 19 6 -0.0907 -9.5387 -0.9271 20 6 -0.8137 -10.6941 -1.1398 21 6 -0.3561 -11.6453 -2.0345 22 6 0.8277 -11.4444 -2.7213 23 6 1.5630 -10.2954 -2.5136 24 7 2.8323 -10.0846 -3.2451 25 8 2.9329 -10.4412 -4.4054 26 8 3.7762 -9.5547 -2.6869 27 6 2.2449 -3.6629 0.0038 28 1 -0.4850 0.8401 0.0004 29 1 -0.3671 -1.7793 1.2289 30 1 0.9913 -2.4824 2.1403 31 1 -0.9960 -4.0167 0.4021 32 1 -0.9400 -4.0165 2.1819 33 1 0.1884 -6.0220 1.2415 34 1 1.3373 -4.9825 2.1176 35 1 3.0185 -6.1753 0.8013 36 1 3.0939 -5.9066 -0.9566 37 1 0.8618 -7.6192 0.3626 38 1 2.6560 -7.8090 -2.0934 39 1 -0.4492 -8.7969 -0.2288 40 1 -1.7389 -10.8567 -0.6070 41 1 -0.9254 -12.5484 -2.1973 42 1 1.1794 -12.1905 -3.4187 43 1 2.8797 -3.5951 0.8873 44 1 2.8636 -3.6155 -0.8923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597173571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:06 Heat of formation + Delta-G solvation = 20.708703 kcal Electronic energy + Delta-G solvation = -25530.622214 eV Core-core repulsion = 21836.486059 eV Total energy + Delta-G solvation = -3694.136156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.28980 -40.48143 -39.86080 -37.72777 -36.57982 -35.06759 -33.46688 -32.98816 -31.75242 -31.03527 -27.89223 -26.96024 -26.70490 -24.60091 -23.60975 -23.28303 -22.73277 -20.48094 -20.34165 -20.15774 -19.77254 -18.65367 -18.43754 -17.56008 -16.82064 -16.37670 -16.28329 -15.89935 -15.57990 -15.49349 -14.96850 -14.76750 -14.51550 -14.37457 -14.12808 -13.87860 -13.54200 -13.34602 -12.93031 -12.86119 -12.79885 -12.72211 -12.55869 -12.40514 -12.30798 -12.27318 -11.98803 -11.79221 -11.71480 -11.41944 -11.35649 -10.85613 -10.66610 -10.55593 -10.38255 -9.54116 -9.11740 -8.09214 -6.23113 -1.15958 -0.28372 0.13300 0.40105 1.25960 1.39008 1.41142 1.52213 2.41578 2.44579 3.05056 3.17813 3.33240 3.40046 3.74388 3.88490 3.98600 4.02666 4.10566 4.16262 4.29128 4.35201 4.41313 4.44712 4.60769 4.66370 4.71411 4.76548 4.81128 4.90186 4.98447 4.99469 5.09498 5.15681 5.17427 5.17809 5.40026 5.42705 5.51674 5.53736 5.58191 5.63421 5.94972 6.11519 6.19854 6.30328 6.42733 6.44375 6.89568 7.44785 8.95436 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.002555 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.885732 B =10955.807346 C =11788.877448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.053 3.947 10 H -0.005 1.005 11 C -0.105 4.105 12 C -0.110 4.110 13 C 0.062 3.938 14 N -0.544 5.544 15 C 0.075 3.925 16 C -0.074 4.074 17 C -0.162 4.162 18 C 0.003 3.997 19 C -0.119 4.119 20 C -0.053 4.053 21 C -0.109 4.109 22 C -0.064 4.064 23 C -0.065 4.065 24 N 0.028 4.972 25 O -0.176 6.176 26 O -0.180 6.180 27 C 0.080 3.920 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.109 0.891 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.184 0.816 42 H 0.157 0.843 43 H 0.019 0.981 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 -26.142 1.258 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.034 3.966 10 H 0.013 0.987 11 C -0.144 4.144 12 C -0.148 4.148 13 C -0.065 4.065 14 N -0.269 5.269 15 C -0.052 4.052 16 C -0.092 4.092 17 C -0.181 4.181 18 C 0.002 3.998 19 C -0.138 4.138 20 C -0.070 4.070 21 C -0.128 4.128 22 C -0.083 4.083 23 C -0.148 4.148 24 N 0.544 4.456 25 O -0.392 6.392 26 O -0.394 6.394 27 C -0.047 4.047 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.182 0.818 40 H 0.201 0.799 41 H 0.202 0.798 42 H 0.175 0.825 43 H 0.037 0.963 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.472 -26.115 1.211 26.710 hybrid contribution 1.761 1.591 0.031 2.373 sum -3.712 -24.524 1.242 24.834 Atomic orbital electron populations 1.70034 1.07091 1.26990 1.51268 1.25701 0.95682 1.02256 0.94802 0.85583 0.79052 0.79848 0.77637 1.19312 1.20702 1.20431 1.21557 0.92958 0.92278 1.50722 0.93216 1.18578 0.92959 0.91126 0.93898 0.98681 1.21467 0.99115 0.96619 0.97178 1.21588 0.97540 0.94640 1.01052 1.22145 0.95160 0.99508 0.89690 1.62007 1.24309 1.01392 1.39189 1.21226 0.93852 0.88651 1.01479 1.23383 0.96949 0.92610 0.96282 1.21638 1.01346 0.94798 1.00364 1.18991 0.95720 0.92417 0.92689 1.21749 0.92345 1.00096 0.99574 1.22041 0.99722 0.90841 0.94437 1.21717 0.94009 1.01721 0.95311 1.21244 0.94326 0.94208 0.98569 1.21394 0.87783 1.02118 1.03496 1.44003 1.03222 0.97668 1.00691 1.94503 1.89885 1.53296 1.01494 1.94536 1.31426 1.43258 1.70161 1.21996 0.95427 0.88806 0.98485 0.93053 0.92417 0.95804 0.93123 0.90830 0.88462 0.95218 0.92484 0.91034 0.83985 0.87298 0.81846 0.79947 0.79831 0.82540 0.96265 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.28 11.35 21.45 0.24 -53.04 16 2 C 0.01 0.81 5.30 84.65 0.45 1.25 16 3 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.54 -30.12 8.56 25.60 0.22 -29.91 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 9 C 0.05 2.72 2.26 -11.49 -0.03 2.70 16 10 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 11 C -0.11 -4.98 5.02 30.67 0.15 -4.83 16 12 C -0.11 -3.99 6.09 30.65 0.19 -3.81 16 13 C 0.06 1.89 5.31 86.33 0.46 2.35 16 14 N -0.54 -18.87 4.65 -900.91 -4.19 -23.05 16 15 C 0.07 2.10 5.41 85.56 0.46 2.56 16 16 C -0.07 -1.68 8.56 24.53 0.21 -1.47 16 17 C -0.16 -3.99 8.49 23.65 0.20 -3.79 16 18 C 0.00 0.07 5.83 -20.12 -0.12 -0.05 16 19 C -0.12 -1.53 9.34 22.52 0.21 -1.32 16 20 C -0.05 -0.35 10.03 22.23 0.22 -0.13 16 21 C -0.11 -0.76 10.04 22.32 0.22 -0.54 16 22 C -0.06 -0.90 9.66 22.23 0.21 -0.69 16 23 C -0.07 -1.43 6.51 36.63 0.24 -1.19 16 24 N 0.03 0.79 4.26 -45.87 -0.20 0.59 16 25 O -0.18 -5.15 18.95 18.89 0.36 -4.79 16 26 O -0.18 -5.62 16.58 18.89 0.31 -5.31 16 27 C 0.08 3.42 4.68 86.33 0.40 3.82 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.06 3.10 6.15 -2.39 -0.01 3.09 16 30 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 33 H 0.10 2.20 6.43 -2.38 -0.02 2.19 16 34 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.06 1.49 8.12 -2.39 -0.02 1.47 16 36 H 0.07 2.14 7.65 -2.39 -0.02 2.12 16 37 H 0.14 2.39 5.10 -2.91 -0.01 2.38 16 38 H 0.11 3.17 6.19 -2.91 -0.02 3.16 16 39 H 0.16 1.54 6.46 -2.91 -0.02 1.52 16 40 H 0.18 -0.16 8.06 -2.91 -0.02 -0.18 16 41 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 42 H 0.16 1.76 8.01 -2.91 -0.02 1.74 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 2.26 8.01 -2.39 -0.02 2.24 16 Total: -1.00 -70.60 360.88 3.28 -67.32 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.00 Total: 7.11 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 3.71 Total: -35.04 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -4.14 Total: -75.49 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.67 Total: -10.10 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.60 3.28 -67.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.030 kcal (2) G-P(sol) polarization free energy of solvation -70.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds