Wall clock time and date at job start Tue Mar 31 2020 11:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86797 * 119.99739 * 2 1 4 4 H 1.48494 * 109.47497 * 270.00057 * 3 2 1 5 5 H 1.48498 * 109.47189 * 30.00216 * 3 2 1 6 6 H 1.48500 * 109.46847 * 149.99930 * 3 2 1 7 7 C 1.40223 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99653 * 190.63048 * 7 2 1 9 9 C 1.41102 * 120.00481 * 10.62656 * 7 2 1 10 10 C 1.40890 * 120.10328 * 209.43739 * 9 7 2 11 11 C 1.36317 * 119.89213 * 180.02562 * 10 9 7 12 12 C 1.40019 * 120.10700 * 0.02562 * 11 10 9 13 13 C 1.47636 * 119.89607 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00474 * 329.85582 * 13 12 11 15 15 N 1.34778 * 120.00056 * 149.84419 * 13 12 11 16 16 C 1.46502 * 119.99695 * 6.35135 * 15 13 12 17 17 C 1.50701 * 109.47457 * 98.99409 * 16 15 13 18 18 N 1.34770 * 120.00355 * 179.97438 * 17 16 15 19 19 O 1.21285 * 119.99908 * 359.97438 * 17 16 15 20 20 C 1.46496 * 120.00252 * 186.34257 * 15 13 12 21 21 C 1.54268 * 110.03058 * 57.91561 * 20 15 13 22 22 C 1.54970 * 104.15780 * 217.13556 * 21 20 15 23 23 C 1.54891 * 102.77686 * 37.88660 * 22 21 20 24 24 C 1.53877 * 110.03429 * 300.69478 * 20 15 13 25 25 C 1.40012 * 120.20560 * 0.25956 * 12 11 10 26 26 C 1.36317 * 120.10921 * 359.43220 * 25 12 11 27 27 H 0.96995 * 120.00104 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.05732 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.94772 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.46712 * 218.99562 * 16 15 13 31 31 H 1.09002 * 109.47275 * 338.99522 * 16 15 13 32 32 H 0.97005 * 119.99662 * 0.02562 * 18 17 16 33 33 H 0.96998 * 120.00360 * 180.02562 * 18 17 16 34 34 H 1.09000 * 110.02035 * 179.30214 * 20 15 13 35 35 H 1.08998 * 110.48322 * 335.77927 * 21 20 15 36 36 H 1.08995 * 110.48794 * 98.42556 * 21 20 15 37 37 H 1.08998 * 110.71952 * 279.57189 * 22 21 20 38 38 H 1.08996 * 110.92173 * 156.29294 * 22 21 20 39 39 H 1.09001 * 110.48346 * 203.40673 * 23 22 21 40 40 H 1.08998 * 110.59582 * 80.82148 * 23 22 21 41 41 H 1.09000 * 110.03408 * 238.56908 * 24 20 15 42 42 H 1.08998 * 110.02837 * 359.95121 * 24 20 15 43 43 H 1.07999 * 119.94412 * 179.72685 * 25 12 11 44 44 H 1.07993 * 120.05504 * 180.25259 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0465 -1.4000 5 1 1.4379 2.6526 0.7001 6 1 3.5379 1.4402 0.7001 7 6 2.0076 -1.2144 -0.0005 8 1 3.0737 -1.2225 0.1720 9 6 1.3202 -2.4258 -0.2264 10 6 1.7918 -3.6233 0.3469 11 6 1.1247 -4.7913 0.1254 12 6 -0.0270 -4.8023 -0.6708 13 6 -0.7455 -6.0700 -0.9080 14 8 -0.1352 -7.1215 -0.9211 15 7 -2.0781 -6.0618 -1.1099 16 6 -2.7924 -4.7886 -1.2327 17 6 -3.0184 -4.4779 -2.6899 18 7 -3.6616 -3.3485 -3.0463 19 8 -2.6213 -5.2442 -3.5421 20 6 -2.8121 -7.3259 -1.2067 21 6 -2.6045 -8.1570 0.0763 22 6 -2.5239 -9.6199 -0.4287 23 6 -1.7369 -9.4814 -1.7556 24 6 -2.2611 -8.1676 -2.3711 25 6 -0.4960 -3.6158 -1.2475 26 6 0.1607 -2.4419 -1.0266 27 1 -0.4850 0.8400 -0.0004 28 1 2.6807 -3.6161 0.9601 29 1 1.4857 -5.7099 0.5641 30 1 -3.7534 -4.8607 -0.7233 31 1 -2.1996 -3.9941 -0.7795 32 1 -3.9788 -2.7354 -2.3648 33 1 -3.8074 -3.1486 -3.9842 34 1 -3.8738 -7.1303 -1.3571 35 1 -1.6750 -7.8720 0.5691 36 1 -3.4500 -8.0322 0.7527 37 1 -3.5211 -10.0204 -0.6111 38 1 -1.9810 -10.2465 0.2788 39 1 -1.9495 -10.3230 -2.4148 40 1 -0.6667 -9.4113 -1.5611 41 1 -3.0556 -8.3812 -3.0861 42 1 -1.4482 -7.6351 -2.8646 43 1 -1.3823 -3.6299 -1.8644 44 1 -0.2041 -1.5265 -1.4685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611145908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:45 Heat of formation + Delta-G solvation = -35.253799 kcal Electronic energy + Delta-G solvation = -27277.582788 eV Core-core repulsion = 23581.019916 eV Total energy + Delta-G solvation = -3696.562872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47789 -38.72461 -37.72285 -36.33639 -34.48695 -33.73935 -33.49753 -30.44407 -29.60810 -28.36664 -28.21262 -26.94303 -25.45902 -22.19570 -21.25800 -20.86989 -20.47620 -20.18307 -18.35733 -17.60089 -17.49422 -16.70726 -16.11502 -16.04646 -15.49393 -15.03428 -14.93390 -14.34282 -14.10866 -13.82746 -13.48523 -13.41779 -13.11280 -12.82290 -12.50997 -12.41039 -11.89712 -11.72346 -11.56883 -11.33924 -11.25821 -11.07123 -10.97947 -10.80919 -10.74410 -10.68491 -10.46437 -10.15166 -10.00633 -9.93090 -9.56670 -9.49689 -9.38780 -8.78015 -8.19653 -7.72250 -7.51328 -6.99104 -4.63041 2.22357 2.73345 2.91452 2.94646 2.96720 2.97923 3.31531 3.64777 3.75217 3.95507 4.50734 4.83332 4.92004 5.08935 5.14180 5.28315 5.41918 5.47458 5.66063 5.72419 5.80565 5.86745 5.90305 5.96779 5.98943 6.12963 6.16457 6.24211 6.33502 6.49304 6.65083 6.71878 6.77437 6.82553 6.88688 6.96394 7.07886 7.14825 7.40520 7.41043 7.56851 7.74502 7.82713 8.02713 8.07619 8.37734 8.40793 8.62431 8.71451 9.02942 9.93059 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.003925 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.797332 B = 7131.276248 C = 8105.314316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.448 4.448 8 H 0.083 0.917 9 C 0.127 3.873 10 C -0.230 4.230 11 C -0.029 4.029 12 C -0.272 4.272 13 C 0.580 3.420 14 O -0.549 6.549 15 N -0.595 5.595 16 C 0.058 3.942 17 C 0.496 3.504 18 N -0.857 5.857 19 O -0.528 6.528 20 C 0.154 3.846 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.094 4.094 26 C -0.166 4.166 27 H 0.284 0.716 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.402 0.598 33 H 0.399 0.601 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 -4.211 -0.799 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.101 0.899 9 C 0.124 3.876 10 C -0.249 4.249 11 C -0.048 4.048 12 C -0.276 4.276 13 C 0.375 3.625 14 O -0.429 6.429 15 N -0.327 5.327 16 C -0.069 4.069 17 C 0.280 3.720 18 N -0.422 5.422 19 O -0.403 6.403 20 C 0.051 3.949 21 C -0.171 4.171 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.113 4.113 26 C -0.185 4.185 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.170 0.830 32 H 0.231 0.769 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.122 0.878 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.607 -5.245 -1.190 11.010 hybrid contribution -0.125 1.450 -0.144 1.463 sum -9.732 -3.795 -1.335 10.531 Atomic orbital electron populations 1.69690 1.07687 1.29653 1.34012 1.26017 0.94921 1.01611 0.91994 0.86185 0.80486 0.79915 0.79513 1.19099 1.20057 1.18396 1.19799 0.96293 0.90468 1.41086 0.89907 1.17790 0.90906 0.92163 0.86768 1.20785 1.03551 0.93366 1.07219 1.20296 0.92574 0.96778 0.95122 1.18978 1.02529 0.91875 1.14213 1.18537 0.80130 0.89617 0.74242 1.90633 1.66482 1.33586 1.52164 1.47517 1.07477 1.04317 1.73428 1.22414 1.00310 0.91326 0.92884 1.21366 0.76810 0.81073 0.92763 1.43893 1.61758 1.24533 1.12034 1.90753 1.48975 1.48162 1.52423 1.21559 0.94579 0.83625 0.95155 1.22733 1.02404 0.94969 0.96959 1.22375 0.99503 0.96118 0.97502 1.22279 1.01229 0.96336 0.95638 1.22299 1.00696 0.95796 0.96762 1.21076 0.98388 0.92863 0.98958 1.21040 0.98993 0.96551 1.01906 0.90502 0.88297 0.88301 0.88955 0.82962 0.76933 0.77076 0.90571 0.89992 0.92258 0.92266 0.91931 0.92926 0.90457 0.92816 0.90364 0.87787 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.02 10.87 55.56 0.60 -17.41 16 2 C 0.07 1.68 5.25 -17.31 -0.09 1.59 16 3 Si 0.91 17.10 29.57 -169.99 -5.03 12.07 16 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.45 -10.96 9.05 -37.75 -0.34 -11.30 16 8 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 9 C 0.13 3.15 5.55 -106.80 -0.59 2.56 16 10 C -0.23 -5.43 9.73 -39.27 -0.38 -5.81 16 11 C -0.03 -0.66 9.52 -39.61 -0.38 -1.03 16 12 C -0.27 -6.11 5.59 -104.73 -0.59 -6.70 16 13 C 0.58 12.30 6.27 -12.42 -0.08 12.22 16 14 O -0.55 -12.55 12.68 5.29 0.07 -12.48 16 15 N -0.60 -10.44 1.97 -167.37 -0.33 -10.77 16 16 C 0.06 0.86 5.30 -5.19 -0.03 0.83 16 17 C 0.50 7.50 6.19 -10.99 -0.07 7.43 16 18 N -0.86 -9.13 8.87 31.22 0.28 -8.85 16 19 O -0.53 -10.17 16.86 5.55 0.09 -10.07 16 20 C 0.15 2.40 3.15 -66.81 -0.21 2.19 16 21 C -0.13 -1.92 6.10 -25.03 -0.15 -2.07 16 22 C -0.12 -1.53 6.91 -24.69 -0.17 -1.70 16 23 C -0.12 -1.75 6.40 -25.07 -0.16 -1.91 16 24 C -0.12 -1.94 5.50 -25.61 -0.14 -2.08 16 25 C -0.09 -2.05 7.39 -39.61 -0.29 -2.34 16 26 C -0.17 -3.93 8.59 -39.27 -0.34 -4.26 16 27 H 0.28 5.86 8.29 -40.82 -0.34 5.52 16 28 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 29 H 0.10 2.17 7.91 -52.48 -0.42 1.75 16 30 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 31 H 0.15 2.47 4.02 -52.09 -0.21 2.26 16 32 H 0.40 3.17 8.83 -40.82 -0.36 2.81 16 33 H 0.40 3.81 8.93 -40.82 -0.36 3.45 16 34 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 35 H 0.08 1.43 6.32 -51.93 -0.33 1.10 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.34 7.22 -51.93 -0.38 0.96 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.59 6.96 -51.93 -0.36 1.23 16 43 H 0.10 2.00 3.18 -52.49 -0.17 1.83 16 44 H 0.12 2.92 6.25 -52.49 -0.33 2.59 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -29.80 349.27 -8.89 -38.69 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -5.83 Total: 15.95 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -4.01 Total: -12.40 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.55 Total: -37.03 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.16 Total: -22.55 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.80 -8.89 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611145908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.439 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds