Wall clock time and date at job start Tue Mar 31 2020 11:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86797 * 119.99739 * 2 1 4 4 H 1.48494 * 109.47497 * 270.00057 * 3 2 1 5 5 H 1.48498 * 109.47189 * 30.00216 * 3 2 1 6 6 H 1.48500 * 109.46847 * 149.99930 * 3 2 1 7 7 C 1.40223 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99653 * 190.63048 * 7 2 1 9 9 C 1.41102 * 120.00481 * 10.62656 * 7 2 1 10 10 C 1.40890 * 120.10328 * 209.43739 * 9 7 2 11 11 C 1.36317 * 119.89213 * 180.02562 * 10 9 7 12 12 C 1.40019 * 120.10700 * 0.02562 * 11 10 9 13 13 C 1.47636 * 119.89607 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00474 * 329.85582 * 13 12 11 15 15 N 1.34778 * 120.00056 * 149.84419 * 13 12 11 16 16 C 1.46502 * 119.99695 * 6.35135 * 15 13 12 17 17 C 1.50701 * 109.47457 * 98.99409 * 16 15 13 18 18 N 1.34770 * 120.00355 * 179.97438 * 17 16 15 19 19 O 1.21285 * 119.99908 * 359.97438 * 17 16 15 20 20 C 1.46496 * 120.00252 * 186.34257 * 15 13 12 21 21 C 1.54268 * 110.03058 * 57.91561 * 20 15 13 22 22 C 1.54970 * 104.15780 * 217.13556 * 21 20 15 23 23 C 1.54891 * 102.77686 * 37.88660 * 22 21 20 24 24 C 1.53877 * 110.03429 * 300.69478 * 20 15 13 25 25 C 1.40012 * 120.20560 * 0.25956 * 12 11 10 26 26 C 1.36317 * 120.10921 * 359.43220 * 25 12 11 27 27 H 0.96995 * 120.00104 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.05732 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.94772 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.46712 * 218.99562 * 16 15 13 31 31 H 1.09002 * 109.47275 * 338.99522 * 16 15 13 32 32 H 0.97005 * 119.99662 * 0.02562 * 18 17 16 33 33 H 0.96998 * 120.00360 * 180.02562 * 18 17 16 34 34 H 1.09000 * 110.02035 * 179.30214 * 20 15 13 35 35 H 1.08998 * 110.48322 * 335.77927 * 21 20 15 36 36 H 1.08995 * 110.48794 * 98.42556 * 21 20 15 37 37 H 1.08998 * 110.71952 * 279.57189 * 22 21 20 38 38 H 1.08996 * 110.92173 * 156.29294 * 22 21 20 39 39 H 1.09001 * 110.48346 * 203.40673 * 23 22 21 40 40 H 1.08998 * 110.59582 * 80.82148 * 23 22 21 41 41 H 1.09000 * 110.03408 * 238.56908 * 24 20 15 42 42 H 1.08998 * 110.02837 * 359.95121 * 24 20 15 43 43 H 1.07999 * 119.94412 * 179.72685 * 25 12 11 44 44 H 1.07993 * 120.05504 * 180.25259 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0465 -1.4000 5 1 1.4379 2.6526 0.7001 6 1 3.5379 1.4402 0.7001 7 6 2.0076 -1.2144 -0.0005 8 1 3.0737 -1.2225 0.1720 9 6 1.3202 -2.4258 -0.2264 10 6 1.7918 -3.6233 0.3469 11 6 1.1247 -4.7913 0.1254 12 6 -0.0270 -4.8023 -0.6708 13 6 -0.7455 -6.0700 -0.9080 14 8 -0.1352 -7.1215 -0.9211 15 7 -2.0781 -6.0618 -1.1099 16 6 -2.7924 -4.7886 -1.2327 17 6 -3.0184 -4.4779 -2.6899 18 7 -3.6616 -3.3485 -3.0463 19 8 -2.6213 -5.2442 -3.5421 20 6 -2.8121 -7.3259 -1.2067 21 6 -2.6045 -8.1570 0.0763 22 6 -2.5239 -9.6199 -0.4287 23 6 -1.7369 -9.4814 -1.7556 24 6 -2.2611 -8.1676 -2.3711 25 6 -0.4960 -3.6158 -1.2475 26 6 0.1607 -2.4419 -1.0266 27 1 -0.4850 0.8400 -0.0004 28 1 2.6807 -3.6161 0.9601 29 1 1.4857 -5.7099 0.5641 30 1 -3.7534 -4.8607 -0.7233 31 1 -2.1996 -3.9941 -0.7795 32 1 -3.9788 -2.7354 -2.3648 33 1 -3.8074 -3.1486 -3.9842 34 1 -3.8738 -7.1303 -1.3571 35 1 -1.6750 -7.8720 0.5691 36 1 -3.4500 -8.0322 0.7527 37 1 -3.5211 -10.0204 -0.6111 38 1 -1.9810 -10.2465 0.2788 39 1 -1.9495 -10.3230 -2.4148 40 1 -0.6667 -9.4113 -1.5611 41 1 -3.0556 -8.3812 -3.0861 42 1 -1.4482 -7.6351 -2.8646 43 1 -1.3823 -3.6299 -1.8644 44 1 -0.2041 -1.5265 -1.4685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611145908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:44 Heat of formation + Delta-G solvation = -53.872189 kcal Electronic energy + Delta-G solvation = -27278.390142 eV Core-core repulsion = 23581.019916 eV Total energy + Delta-G solvation = -3697.370226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.89560 -40.03653 -39.36480 -37.82494 -35.99108 -35.39945 -34.61344 -32.13233 -31.40802 -29.56421 -29.49604 -28.43836 -27.05811 -23.80740 -22.99355 -22.24327 -21.68624 -21.48300 -19.80494 -19.37622 -18.73086 -17.93989 -17.62127 -17.29976 -17.02338 -16.45577 -16.29107 -15.82685 -15.54129 -15.31505 -14.92895 -14.85838 -14.53990 -14.40543 -14.02836 -13.91728 -13.57404 -13.37391 -12.91546 -12.82581 -12.71915 -12.58926 -12.44754 -12.30417 -11.93879 -11.88358 -11.79187 -11.63258 -11.37628 -11.26032 -11.19260 -11.11117 -10.61831 -10.41672 -9.62290 -9.51285 -9.31862 -8.70896 -6.47005 0.47972 1.07503 1.41230 1.44083 1.53441 1.58826 1.98425 2.10072 2.19815 2.65233 2.83727 3.61715 3.64037 3.77316 3.93689 4.01153 4.13369 4.18576 4.26611 4.40837 4.43270 4.48332 4.59199 4.67656 4.69936 4.83529 4.90159 4.99284 5.04945 5.08215 5.12859 5.16737 5.28246 5.31617 5.37189 5.57111 5.59269 5.74153 5.85400 5.92737 5.94885 5.99646 6.23023 6.38361 6.55277 6.57029 6.80497 6.88722 7.34466 7.43338 8.24088 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.003925 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.797332 B = 7131.276248 C = 8105.314316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.040 3.960 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.481 4.481 8 H 0.080 0.920 9 C 0.101 3.899 10 C -0.245 4.245 11 C -0.037 4.037 12 C -0.283 4.283 13 C 0.574 3.426 14 O -0.575 6.575 15 N -0.589 5.589 16 C 0.052 3.948 17 C 0.494 3.506 18 N -0.833 5.833 19 O -0.574 6.574 20 C 0.148 3.852 21 C -0.130 4.130 22 C -0.108 4.108 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.084 4.084 26 C -0.181 4.181 27 H 0.296 0.704 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.419 0.581 33 H 0.408 0.592 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.068 0.932 42 H 0.031 0.969 43 H 0.130 0.870 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.669 -3.527 -0.638 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.509 4.509 8 H 0.098 0.902 9 C 0.098 3.902 10 C -0.264 4.264 11 C -0.056 4.056 12 C -0.288 4.288 13 C 0.368 3.632 14 O -0.456 6.456 15 N -0.320 5.320 16 C -0.074 4.074 17 C 0.278 3.722 18 N -0.399 5.399 19 O -0.453 6.453 20 C 0.045 3.955 21 C -0.169 4.169 22 C -0.146 4.146 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.102 4.102 26 C -0.200 4.200 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.250 0.750 33 H 0.240 0.760 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.148 0.852 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.277 -4.523 -1.020 13.124 hybrid contribution 0.597 1.218 -0.214 1.374 sum -11.680 -3.305 -1.235 12.201 Atomic orbital electron populations 1.69696 1.08693 1.31232 1.33114 1.26764 0.95754 1.04222 0.91085 0.85144 0.79032 0.75716 0.79567 1.18702 1.18701 1.18616 1.20027 0.96463 0.91539 1.42857 0.90219 1.18120 0.91813 0.92791 0.87476 1.20913 1.04117 0.93538 1.07847 1.20431 0.93031 0.96711 0.95472 1.19289 1.02618 0.93012 1.13841 1.18407 0.81573 0.88633 0.74573 1.90618 1.67530 1.34039 1.53456 1.47472 1.06406 1.06236 1.71843 1.22556 1.01956 0.89608 0.93288 1.21380 0.76825 0.81641 0.92338 1.43691 1.59784 1.23183 1.13212 1.90756 1.51229 1.49955 1.53383 1.21862 0.95735 0.82657 0.95246 1.22713 1.01804 0.95658 0.96682 1.22375 1.00787 0.95399 0.96036 1.22243 0.99468 0.96401 0.97374 1.22244 0.99560 0.96203 0.97309 1.21303 0.98661 0.91895 0.98333 1.21040 0.99410 0.97026 1.02574 0.89329 0.87789 0.88009 0.84118 0.84415 0.74967 0.76023 0.87349 0.93478 0.89319 0.89166 0.91471 0.90914 0.93880 0.91369 0.94966 0.85246 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.47 10.87 21.87 0.24 -36.23 16 2 C 0.04 1.79 5.25 85.35 0.45 2.24 16 3 Si 0.98 34.44 29.57 68.60 2.03 36.46 16 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 5 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 7 C -0.48 -24.08 9.05 23.46 0.21 -23.87 16 8 H 0.08 3.89 7.87 -2.91 -0.02 3.86 16 9 C 0.10 5.18 5.55 -21.28 -0.12 5.06 16 10 C -0.24 -12.06 9.73 22.47 0.22 -11.84 16 11 C -0.04 -1.78 9.52 22.25 0.21 -1.57 16 12 C -0.28 -13.07 5.59 -19.93 -0.11 -13.19 16 13 C 0.57 24.86 6.27 86.72 0.54 25.41 16 14 O -0.57 -27.35 12.68 -4.00 -0.05 -27.40 16 15 N -0.59 -20.14 1.97 -801.71 -1.58 -21.73 16 16 C 0.05 1.43 5.30 85.63 0.45 1.89 16 17 C 0.49 14.00 6.19 87.66 0.54 14.54 16 18 N -0.83 -15.56 8.87 -173.54 -1.54 -17.10 16 19 O -0.57 -21.69 16.86 -3.04 -0.05 -21.74 16 20 C 0.15 4.31 3.15 45.72 0.14 4.45 16 21 C -0.13 -3.52 6.10 31.70 0.19 -3.33 16 22 C -0.11 -2.57 6.91 31.91 0.22 -2.35 16 23 C -0.12 -3.43 6.40 31.67 0.20 -3.23 16 24 C -0.11 -3.73 5.50 31.32 0.17 -3.56 16 25 C -0.08 -3.67 7.39 22.25 0.16 -3.51 16 26 C -0.18 -8.76 8.59 22.47 0.19 -8.57 16 27 H 0.30 11.84 8.29 -92.71 -0.77 11.07 16 28 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.10 4.69 7.91 -2.91 -0.02 4.66 16 30 H 0.14 2.51 8.11 -2.39 -0.02 2.49 16 31 H 0.14 4.27 4.02 -2.53 -0.01 4.26 16 32 H 0.42 5.23 8.83 -92.70 -0.82 4.41 16 33 H 0.41 6.78 8.93 -92.71 -0.83 5.96 16 34 H 0.11 2.49 7.94 -2.39 -0.02 2.47 16 35 H 0.05 1.62 6.32 -2.39 -0.02 1.61 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.04 1.55 7.22 -2.39 -0.02 1.53 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.03 1.34 6.96 -2.39 -0.02 1.32 16 43 H 0.13 4.91 3.18 -2.91 -0.01 4.90 16 44 H 0.12 5.69 6.25 -2.91 -0.02 5.68 16 Total: -1.00 -68.19 349.27 2.15 -66.04 By element: Atomic # 1 Polarization: 43.70 SS G_CDS: -0.59 Total: 43.11 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 3.69 Total: -21.43 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.88 Total: -75.05 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -0.10 Total: -49.14 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.46 kcal Total: -68.19 2.15 -66.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611145908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.170 kcal (2) G-P(sol) polarization free energy of solvation -68.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds