Wall clock time and date at job start Tue Mar 31 2020 10:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00008 * 2 1 4 4 H 1.48495 * 109.46777 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46969 * 300.00457 * 3 2 1 6 6 H 1.48495 * 109.47024 * 60.00147 * 3 2 1 7 7 C 1.37881 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46752 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47183 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46864 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99771 * 179.97438 * 12 11 10 14 14 O 1.21368 * 119.99703 * 0.02562 * 13 12 11 15 15 C 1.49348 * 120.00219 * 180.02562 * 13 12 11 16 16 O 1.21378 * 119.99873 * 359.72389 * 15 13 12 17 17 N 1.34784 * 120.00218 * 180.02562 * 15 13 12 18 18 C 1.39717 * 119.99988 * 175.10406 * 17 15 13 19 19 C 1.38935 * 120.07355 * 214.81870 * 18 17 15 20 20 C 1.38096 * 119.92069 * 179.67890 * 19 18 17 21 21 C 1.38298 * 120.07551 * 0.61849 * 20 19 18 22 22 C 1.50704 * 119.92070 * 179.70096 * 21 20 19 23 23 C 1.52992 * 117.50147 * 8.72864 * 22 21 20 24 24 C 1.52995 * 117.49937 * 300.06637 * 22 21 20 25 25 C 1.38294 * 120.15233 * 359.67807 * 21 20 19 26 26 C 1.38091 * 120.07663 * 0.02562 * 25 21 20 27 27 H 0.96999 * 120.00109 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47149 * 60.00484 * 9 7 2 29 29 H 1.08995 * 109.47379 * 299.99706 * 9 7 2 30 30 H 1.09001 * 109.47464 * 59.99989 * 10 9 7 31 31 H 1.09000 * 109.47152 * 300.00105 * 10 9 7 32 32 H 1.08996 * 109.47123 * 60.00018 * 11 10 9 33 33 H 1.09000 * 109.46972 * 299.99983 * 11 10 9 34 34 H 0.96995 * 120.00197 * 0.02562 * 12 11 10 35 35 H 0.96997 * 119.99710 * 355.09987 * 17 15 13 36 36 H 1.07999 * 120.04008 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.96265 * 180.30163 * 20 19 18 38 38 H 1.09004 * 115.54478 * 154.39754 * 22 21 20 39 39 H 1.08997 * 117.49964 * 359.97438 * 23 22 21 40 40 H 1.08998 * 117.50350 * 145.01950 * 23 22 21 41 41 H 1.09005 * 117.49892 * 214.98451 * 24 22 21 42 42 H 1.08996 * 117.49950 * 359.97391 * 24 22 21 43 43 H 1.07995 * 119.95773 * 180.02562 * 25 21 20 44 44 H 1.07999 * 120.03766 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1006 -0.0018 13 6 1.9830 -7.3713 -0.0019 14 8 0.7897 -7.5930 -0.0020 15 6 2.9535 -8.5065 -0.0020 16 8 4.1468 -8.2847 -0.0070 17 7 2.5042 -9.7772 -0.0026 18 6 3.4080 -10.8377 -0.1059 19 6 3.0549 -11.9883 -0.7998 20 6 3.9531 -13.0319 -0.9056 21 6 5.1982 -12.9377 -0.3110 22 6 6.1732 -14.0814 -0.4229 23 6 5.8127 -15.2268 -1.3710 24 6 5.7418 -15.4354 0.1438 25 6 5.5507 -11.7962 0.3857 26 6 4.6596 -10.7464 0.4902 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 0.8538 -5.0446 -0.8914 33 1 0.8532 -5.0451 0.8886 34 1 3.3858 -5.9233 -0.0014 35 1 1.5534 -9.9555 0.0687 36 1 2.0808 -12.0647 -1.2600 37 1 3.6811 -13.9247 -1.4490 38 1 7.2258 -13.8118 -0.3366 39 1 4.8702 -15.1534 -1.9134 40 1 6.6282 -15.7112 -1.9081 41 1 6.5108 -16.0570 0.6027 42 1 4.7531 -15.4990 0.5980 43 1 6.5239 -11.7258 0.8484 44 1 4.9357 -9.8551 1.0341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611316332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:41 Heat of formation + Delta-G solvation = -29.924418 kcal Electronic energy + Delta-G solvation = -24186.195078 eV Core-core repulsion = 20489.863306 eV Total energy + Delta-G solvation = -3696.331773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23446 -39.88480 -38.69802 -37.17258 -35.82435 -34.74664 -33.35887 -31.34418 -31.26370 -29.95339 -27.31300 -25.39669 -23.89555 -23.21539 -22.64105 -22.47881 -20.94008 -20.68913 -20.09090 -18.74963 -17.82312 -16.84821 -16.44722 -16.39052 -16.25540 -15.56003 -15.20173 -14.96918 -14.87011 -14.47070 -14.43342 -13.95292 -13.82542 -13.52538 -13.23732 -13.12818 -12.34675 -12.20206 -11.93567 -11.90727 -11.85794 -11.76167 -11.57466 -11.14045 -10.94947 -10.81087 -10.76888 -10.59889 -10.36539 -9.94291 -9.86037 -9.44518 -9.24033 -9.14676 -9.07172 -8.40363 -8.33866 -6.04901 -4.07951 0.72199 1.08785 1.40223 2.17418 3.01592 3.25959 3.28828 3.36540 3.40204 3.50003 3.68953 4.15573 4.33173 4.42262 4.43253 4.48926 4.58450 4.64188 4.86347 5.03881 5.18611 5.20753 5.28030 5.31291 5.36495 5.53367 5.60501 5.63318 5.64115 5.71875 5.92493 5.96164 6.03090 6.12074 6.17589 6.29639 6.49677 6.60100 6.67871 6.80404 6.91347 7.27311 7.56243 7.59271 7.70311 7.91421 7.93899 8.34421 8.98751 9.56669 11.06366 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.040531 B = 0.001698 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.665307 B =16482.748755 C =16985.549963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.688 5.688 13 C 0.503 3.497 14 O -0.523 6.523 15 C 0.509 3.491 16 O -0.500 6.500 17 N -0.647 5.647 18 C 0.137 3.863 19 C -0.135 4.135 20 C -0.103 4.103 21 C -0.066 4.066 22 C -0.116 4.116 23 C -0.178 4.178 24 C -0.170 4.170 25 C -0.095 4.095 26 C -0.115 4.115 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.423 0.577 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.752 -31.259 -0.450 32.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.340 5.340 13 C 0.282 3.718 14 O -0.400 6.400 15 C 0.292 3.708 16 O -0.373 6.373 17 N -0.294 5.294 18 C 0.043 3.957 19 C -0.155 4.155 20 C -0.122 4.122 21 C -0.066 4.066 22 C -0.134 4.134 23 C -0.215 4.215 24 C -0.207 4.207 25 C -0.113 4.113 26 C -0.135 4.135 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.248 0.752 35 H 0.261 0.739 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.145 0.855 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.559 -31.032 -0.464 32.474 hybrid contribution 0.359 1.007 -0.016 1.070 sum 9.918 -30.025 -0.480 31.624 Atomic orbital electron populations 1.69971 1.06060 1.26626 1.50596 1.25026 0.94862 0.99339 0.95205 0.86516 0.80083 0.83681 0.77607 1.19726 1.20991 1.20987 1.21236 0.93102 0.90862 1.50924 0.92500 1.19039 0.93801 0.90788 0.97754 1.21938 0.99904 0.92885 1.01369 1.21888 0.91701 0.84607 1.02676 1.46070 1.12365 1.04858 1.70677 1.19761 0.88250 0.84373 0.79406 1.90784 1.15779 1.84592 1.48808 1.20534 0.89055 0.84172 0.77076 1.90766 1.16139 1.84489 1.45934 1.43141 1.11447 1.03985 1.70836 1.17765 0.91360 0.88041 0.98499 1.20907 1.00945 0.93582 1.00074 1.20807 0.93048 0.98541 0.99791 1.19148 0.94201 0.94537 0.98753 1.21020 0.98658 0.88005 1.05742 1.23080 1.03606 1.01882 0.92898 1.23045 1.03197 0.98154 0.96302 1.20855 0.99597 0.92261 0.98620 1.21309 0.92990 0.99763 0.99402 0.92962 0.96156 0.96165 0.92374 0.92385 0.90953 0.90929 0.75212 0.73862 0.85327 0.85494 0.86910 0.88324 0.88425 0.88468 0.88537 0.85515 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 12 N -0.69 -9.89 5.55 -60.76 -0.34 -10.23 16 13 C 0.50 7.19 7.89 -11.63 -0.09 7.10 16 14 O -0.52 -8.51 16.48 5.48 0.09 -8.42 16 15 C 0.51 6.50 7.73 -11.63 -0.09 6.41 16 16 O -0.50 -7.10 13.91 5.47 0.08 -7.02 16 17 N -0.65 -6.81 5.32 -10.29 -0.05 -6.87 16 18 C 0.14 1.41 6.30 -83.75 -0.53 0.89 16 19 C -0.13 -1.14 9.97 -39.38 -0.39 -1.53 16 20 C -0.10 -0.80 9.29 -39.61 -0.37 -1.17 16 21 C -0.07 -0.54 5.61 -104.58 -0.59 -1.12 16 22 C -0.12 -0.74 6.04 -91.78 -0.55 -1.29 16 23 C -0.18 -0.92 9.86 -26.70 -0.26 -1.18 16 24 C -0.17 -0.89 10.17 -26.70 -0.27 -1.16 16 25 C -0.09 -0.85 9.73 -39.61 -0.39 -1.24 16 26 C -0.11 -1.22 8.70 -39.38 -0.34 -1.57 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.41 5.35 7.94 -40.82 -0.32 5.03 16 35 H 0.42 3.75 8.30 -40.82 -0.34 3.41 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.74 6.01 -52.49 -0.32 0.42 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.47 6.17 -51.93 -0.32 0.15 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.14 1.64 6.23 -52.49 -0.33 1.32 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -31.76 375.39 -9.68 -41.44 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.24 Total: 4.11 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -4.59 Total: -9.27 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.34 Total: -42.84 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.17 Total: -15.44 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.76 -9.68 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611316332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.514 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds