Wall clock time and date at job start Tue Mar 31 2020 11:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 N 1.46507 * 109.46761 * 270.02289 * 14 13 12 16 16 C 1.34776 * 119.99610 * 180.02562 * 15 14 13 17 17 O 1.21587 * 120.00113 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99873 * 179.97438 * 16 15 14 19 19 C 1.50242 * 130.83617 * 359.66201 * 18 16 15 20 20 C 1.56865 * 100.58651 * 234.62948 * 19 18 16 21 21 C 1.54860 * 103.35343 * 326.65748 * 20 19 18 22 22 C 1.50239 * 130.84169 * 179.97438 * 18 16 15 23 23 C 1.55845 * 101.05242 * 233.93312 * 22 18 16 24 24 C 1.55477 * 103.32474 * 326.97393 * 23 22 18 25 25 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 26 26 C 1.38101 * 120.06877 * 359.97438 * 25 13 12 27 27 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 30 30 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 31 31 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 32 32 H 0.96995 * 120.00045 * 359.97438 * 15 14 13 33 33 H 1.08997 * 115.86014 * 359.67521 * 19 18 16 34 34 H 1.08998 * 110.43837 * 208.31215 * 20 19 18 35 35 H 1.09003 * 111.03862 * 85.28972 * 20 19 18 36 36 H 1.09000 * 110.62702 * 241.78438 * 21 20 19 37 37 H 1.09001 * 110.75799 * 118.82842 * 21 20 19 38 38 H 1.09000 * 115.85543 * 359.60852 * 22 18 16 39 39 H 1.09003 * 110.62282 * 85.54853 * 23 22 18 40 40 H 1.08997 * 110.62258 * 208.56877 * 23 22 18 41 41 H 1.09001 * 110.60931 * 241.58303 * 24 23 22 42 42 H 1.08999 * 110.89464 * 118.55100 * 24 23 22 43 43 H 1.07999 * 119.96521 * 179.97438 * 25 13 12 44 44 H 1.07997 * 120.03156 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 7 6.2539 -6.6935 -0.8921 16 6 6.8762 -7.8806 -1.0330 17 8 7.1553 -8.5411 -0.0511 18 7 7.1890 -8.3357 -2.2625 19 6 6.9574 -7.7358 -3.6204 20 6 6.1934 -8.9093 -4.3273 21 6 6.8232 -10.1765 -3.6982 22 6 7.8711 -9.6016 -2.6974 23 6 9.0261 -9.0323 -3.5752 24 6 8.4009 -7.7564 -4.2065 25 6 3.8530 -4.7987 0.2042 26 6 3.2232 -3.5745 0.0955 27 1 -0.4849 0.8401 0.0004 28 1 5.9419 -1.5655 0.2316 29 1 7.0536 -3.7518 0.4337 30 1 6.8234 -6.0908 1.0345 31 1 5.2448 -6.9070 0.9342 32 1 6.0309 -6.1667 -1.6754 33 1 6.4477 -6.7725 -3.6339 34 1 6.3708 -8.8858 -5.4025 35 1 5.1253 -8.8653 -4.1144 36 1 7.3129 -10.7813 -4.4614 37 1 6.0695 -10.7616 -3.1713 38 1 8.1769 -10.2759 -1.8974 39 1 9.8870 -8.7757 -2.9578 40 1 9.3069 -9.7456 -4.3501 41 1 8.3732 -7.8399 -5.2929 42 1 8.9502 -6.8644 -3.9051 43 1 3.2703 -5.7079 0.1941 44 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727942140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:38 Heat of formation + Delta-G solvation = -9.698931 kcal Electronic energy + Delta-G solvation = -25574.821450 eV Core-core repulsion = 21879.366720 eV Total energy + Delta-G solvation = -3695.454730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91839 -39.40573 -38.59826 -36.96900 -34.35782 -32.49769 -31.70165 -30.81394 -30.37833 -29.91101 -29.47206 -26.05783 -24.62373 -22.92803 -22.53594 -22.17766 -20.63198 -19.89269 -19.73227 -18.40569 -17.97335 -17.33778 -16.05769 -15.88448 -15.81960 -15.06662 -15.05399 -14.47106 -14.20066 -14.04899 -13.87137 -13.48762 -13.29978 -13.12679 -13.02617 -12.78837 -12.68372 -12.34643 -12.25559 -12.12717 -11.94653 -11.73906 -11.49271 -11.29056 -11.14718 -10.91897 -10.86192 -10.76078 -10.39171 -10.22317 -10.12376 -9.48792 -9.14750 -8.95937 -8.65510 -8.37820 -7.48575 -6.50423 -4.17441 1.90328 2.02651 2.59445 3.17094 3.19778 3.22551 3.34161 3.85319 4.16165 4.20029 4.29512 4.40533 4.45294 4.68317 4.73588 4.84699 4.87997 4.97099 5.02433 5.03699 5.12519 5.22013 5.24670 5.38172 5.55684 5.57143 5.58204 5.62223 5.74973 5.78457 5.81252 5.89425 5.91269 6.02306 6.04934 6.25485 6.45648 6.60669 6.68012 6.89211 7.11761 7.13917 7.19746 7.49739 7.70264 7.93861 8.03880 8.65415 8.84150 9.44898 10.56803 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.002456 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.180208 B =11395.631613 C =11645.994361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.167 3.833 11 C -0.195 4.195 12 C -0.055 4.055 13 C -0.205 4.205 14 C 0.197 3.803 15 N -0.737 5.737 16 C 0.729 3.271 17 O -0.598 6.598 18 N -0.651 5.651 19 C 0.120 3.880 20 C -0.131 4.131 21 C -0.132 4.132 22 C 0.147 3.853 23 C -0.132 4.132 24 C -0.129 4.129 25 C -0.051 4.051 26 C -0.224 4.224 27 H 0.281 0.719 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.395 0.605 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.029 -16.179 -9.766 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.114 3.886 11 C -0.215 4.215 12 C -0.074 4.074 13 C -0.206 4.206 14 C 0.074 3.926 15 N -0.392 5.392 16 C 0.431 3.569 17 O -0.477 6.477 18 N -0.390 5.390 19 C 0.016 3.984 20 C -0.169 4.169 21 C -0.171 4.171 22 C 0.043 3.957 23 C -0.170 4.170 24 C -0.168 4.168 25 C -0.070 4.070 26 C -0.243 4.243 27 H 0.091 0.909 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.229 0.771 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.046 -16.213 -8.846 23.822 hybrid contribution -0.137 1.028 -0.406 1.114 sum 14.908 -15.185 -9.252 23.204 Atomic orbital electron populations 1.69644 1.05610 1.28666 1.47375 1.24491 0.95045 0.98928 0.95486 0.86169 0.80350 0.81324 0.79014 1.19817 1.20710 1.18295 1.20791 0.76776 0.96722 1.52402 0.87505 1.83572 1.22752 1.25839 1.79578 1.19178 0.91726 0.85497 0.92222 1.20209 0.91954 0.97897 1.11396 1.20543 0.98421 0.91218 0.97251 1.19307 0.93752 0.93494 1.14058 1.19840 0.98609 0.91884 0.82263 1.45443 1.63412 1.20199 1.10106 1.15392 0.78409 0.81477 0.81574 1.90903 1.61164 1.59013 1.36598 1.49644 1.62877 1.22939 1.03589 1.23803 0.96055 0.97111 0.81419 1.23097 0.99956 0.94316 0.99554 1.22945 0.98593 0.97237 0.98318 1.23447 0.91736 0.85697 0.94806 1.23041 0.97681 0.97327 0.98962 1.22986 0.95231 0.98457 1.00086 1.20708 0.93381 0.96841 0.96102 1.21278 1.01234 0.91756 1.10070 0.90908 0.86380 0.86785 0.91696 0.91684 0.77083 0.86971 0.90492 0.91075 0.90463 0.91195 0.86697 0.91183 0.90417 0.90399 0.91113 0.87112 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 13.96 55.48 0.77 -23.97 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.10 28.62 -169.99 -4.86 16.24 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -10.71 9.95 30.89 0.31 -10.40 16 8 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 9 O -0.21 -5.42 8.59 0.05 0.00 -5.42 16 10 C 0.17 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.20 -3.65 9.99 -39.39 -0.39 -4.05 16 12 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 13 C -0.20 -3.21 5.25 -104.57 -0.55 -3.76 16 14 C 0.20 2.82 5.80 -5.19 -0.03 2.79 16 15 N -0.74 -9.79 5.54 -66.41 -0.37 -10.16 16 16 C 0.73 10.64 8.68 -86.92 -0.75 9.89 16 17 O -0.60 -11.01 16.95 5.29 0.09 -10.92 16 18 N -0.65 -7.22 2.89 -151.21 -0.44 -7.66 16 19 C 0.12 0.95 5.13 -62.25 -0.32 0.63 16 20 C -0.13 -0.90 6.50 -23.66 -0.15 -1.05 16 21 C -0.13 -0.93 6.46 -24.21 -0.16 -1.08 16 22 C 0.15 1.30 5.24 -62.78 -0.33 0.97 16 23 C -0.13 -0.90 6.49 -23.90 -0.16 -1.05 16 24 C -0.13 -0.85 6.49 -23.92 -0.16 -1.01 16 25 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 26 C -0.22 -4.59 9.17 -39.40 -0.36 -4.95 16 27 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 29 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.40 4.69 7.24 -40.82 -0.30 4.39 16 33 H 0.11 0.83 7.23 -51.93 -0.38 0.46 16 34 H 0.08 0.40 7.88 -51.93 -0.41 -0.01 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.39 7.85 -51.93 -0.41 -0.01 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.39 7.85 -51.93 -0.41 -0.02 16 41 H 0.08 0.39 7.88 -51.93 -0.41 -0.02 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.13 2.90 5.64 -52.49 -0.30 2.61 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -31.31 360.92 -9.78 -41.10 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.24 Total: 5.89 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -4.17 Total: -10.53 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.03 Total: -41.79 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.86 Total: 16.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.31 -9.78 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727942140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.396 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds