Wall clock time and date at job start Tue Mar 31 2020 11:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 N 1.46507 * 109.46761 * 270.02289 * 14 13 12 16 16 C 1.34776 * 119.99610 * 180.02562 * 15 14 13 17 17 O 1.21587 * 120.00113 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99873 * 179.97438 * 16 15 14 19 19 C 1.50242 * 130.83617 * 359.66201 * 18 16 15 20 20 C 1.56865 * 100.58651 * 234.62948 * 19 18 16 21 21 C 1.54860 * 103.35343 * 326.65748 * 20 19 18 22 22 C 1.50239 * 130.84169 * 179.97438 * 18 16 15 23 23 C 1.55845 * 101.05242 * 233.93312 * 22 18 16 24 24 C 1.55477 * 103.32474 * 326.97393 * 23 22 18 25 25 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 26 26 C 1.38101 * 120.06877 * 359.97438 * 25 13 12 27 27 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 30 30 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 31 31 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 32 32 H 0.96995 * 120.00045 * 359.97438 * 15 14 13 33 33 H 1.08997 * 115.86014 * 359.67521 * 19 18 16 34 34 H 1.08998 * 110.43837 * 208.31215 * 20 19 18 35 35 H 1.09003 * 111.03862 * 85.28972 * 20 19 18 36 36 H 1.09000 * 110.62702 * 241.78438 * 21 20 19 37 37 H 1.09001 * 110.75799 * 118.82842 * 21 20 19 38 38 H 1.09000 * 115.85543 * 359.60852 * 22 18 16 39 39 H 1.09003 * 110.62282 * 85.54853 * 23 22 18 40 40 H 1.08997 * 110.62258 * 208.56877 * 23 22 18 41 41 H 1.09001 * 110.60931 * 241.58303 * 24 23 22 42 42 H 1.08999 * 110.89464 * 118.55100 * 24 23 22 43 43 H 1.07999 * 119.96521 * 179.97438 * 25 13 12 44 44 H 1.07997 * 120.03156 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 7 6.2539 -6.6935 -0.8921 16 6 6.8762 -7.8806 -1.0330 17 8 7.1553 -8.5411 -0.0511 18 7 7.1890 -8.3357 -2.2625 19 6 6.9574 -7.7358 -3.6204 20 6 6.1934 -8.9093 -4.3273 21 6 6.8232 -10.1765 -3.6982 22 6 7.8711 -9.6016 -2.6974 23 6 9.0261 -9.0323 -3.5752 24 6 8.4009 -7.7564 -4.2065 25 6 3.8530 -4.7987 0.2042 26 6 3.2232 -3.5745 0.0955 27 1 -0.4849 0.8401 0.0004 28 1 5.9419 -1.5655 0.2316 29 1 7.0536 -3.7518 0.4337 30 1 6.8234 -6.0908 1.0345 31 1 5.2448 -6.9070 0.9342 32 1 6.0309 -6.1667 -1.6754 33 1 6.4477 -6.7725 -3.6339 34 1 6.3708 -8.8858 -5.4025 35 1 5.1253 -8.8653 -4.1144 36 1 7.3129 -10.7813 -4.4614 37 1 6.0695 -10.7616 -3.1713 38 1 8.1769 -10.2759 -1.8974 39 1 9.8870 -8.7757 -2.9578 40 1 9.3069 -9.7456 -4.3501 41 1 8.3732 -7.8399 -5.2929 42 1 8.9502 -6.8644 -3.9051 43 1 3.2703 -5.7079 0.1941 44 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727942140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:37 Heat of formation + Delta-G solvation = -28.193177 kcal Electronic energy + Delta-G solvation = -25575.623421 eV Core-core repulsion = 21879.366720 eV Total energy + Delta-G solvation = -3696.256700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72458 -40.97229 -39.72218 -38.53510 -35.64505 -34.45699 -32.73462 -31.88566 -31.34415 -31.03754 -30.28443 -27.74419 -26.13140 -23.86076 -23.71528 -23.05863 -22.11043 -20.76635 -20.52679 -19.85916 -19.32365 -19.03292 -16.99765 -16.90287 -16.73055 -16.56347 -16.28762 -15.85887 -15.72205 -15.49230 -15.23555 -14.90649 -14.43013 -14.30499 -14.09652 -13.99070 -13.88644 -13.57486 -13.32029 -13.11911 -13.06068 -12.62578 -12.59677 -12.48245 -12.32919 -12.22782 -11.94812 -11.86735 -11.67024 -11.32916 -11.31225 -10.96767 -10.92005 -10.28150 -9.86347 -9.56875 -9.12747 -8.51609 -6.24860 0.44330 0.52307 1.32377 1.35714 1.51943 1.63097 2.14157 2.27119 2.69130 2.93503 3.05643 3.19585 3.57863 3.68512 3.77605 3.83351 3.99006 4.11736 4.13184 4.25364 4.27736 4.41400 4.42568 4.51384 4.54302 4.57657 4.60533 4.72149 4.79137 4.93015 5.06371 5.07301 5.08815 5.19695 5.21282 5.25902 5.31663 5.38254 5.42502 5.47308 5.52259 5.68866 5.77048 5.86331 6.15022 6.17756 6.82407 7.02346 7.54823 7.56626 8.59703 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.002456 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.180208 B =11395.631613 C =11645.994361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.400 4.400 8 H 0.083 0.917 9 O -0.240 6.240 10 C 0.131 3.869 11 C -0.190 4.190 12 C -0.044 4.044 13 C -0.174 4.174 14 C 0.203 3.797 15 N -0.730 5.730 16 C 0.722 3.278 17 O -0.643 6.643 18 N -0.655 5.655 19 C 0.112 3.888 20 C -0.126 4.126 21 C -0.126 4.126 22 C 0.132 3.868 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.049 4.049 26 C -0.237 4.237 27 H 0.285 0.715 28 H 0.133 0.867 29 H 0.152 0.848 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.404 0.596 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.131 0.869 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.977 -17.131 -11.452 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.100 0.900 9 O -0.147 6.147 10 C 0.082 3.918 11 C -0.209 4.209 12 C -0.062 4.062 13 C -0.175 4.175 14 C 0.080 3.920 15 N -0.386 5.386 16 C 0.425 3.575 17 O -0.526 6.526 18 N -0.393 5.393 19 C 0.010 3.990 20 C -0.165 4.165 21 C -0.164 4.164 22 C 0.029 3.971 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.068 4.068 26 C -0.256 4.256 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.170 0.830 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.239 0.761 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.149 0.851 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 18.026 -17.202 -10.588 27.073 hybrid contribution -0.843 0.948 0.108 1.273 sum 17.183 -16.254 -10.480 25.871 Atomic orbital electron populations 1.69730 1.06974 1.29686 1.49834 1.25296 0.95863 1.02229 0.95404 0.85211 0.78822 0.77329 0.79356 1.18920 1.19443 1.18541 1.20716 0.78030 0.96169 1.52737 0.89991 1.83520 1.21292 1.27454 1.82478 1.19715 0.93209 0.85029 0.93897 1.20503 0.90504 0.99718 1.10189 1.20924 1.00243 0.89884 0.95167 1.19514 0.93048 0.94431 1.10475 1.19722 0.98640 0.90648 0.83033 1.45200 1.63306 1.20155 1.09896 1.15547 0.78409 0.81361 0.82201 1.90866 1.63012 1.60204 1.38515 1.49807 1.61965 1.23897 1.03611 1.24103 0.97490 0.97711 0.79670 1.23108 0.99060 0.93401 1.00915 1.22931 0.97794 0.97445 0.98258 1.23685 0.93239 0.85030 0.95104 1.23024 0.96261 0.97966 0.98994 1.22994 0.93726 0.97949 1.01485 1.20890 0.94323 0.96240 0.95318 1.21253 1.00323 0.92950 1.11080 0.90519 0.84950 0.83035 0.91042 0.91984 0.76090 0.86532 0.87864 0.92166 0.87743 0.92620 0.88398 0.92290 0.87760 0.87811 0.91724 0.85101 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.26 13.96 21.61 0.30 -53.96 16 2 C 0.01 0.61 5.49 84.83 0.47 1.08 16 3 Si 0.97 44.35 28.62 68.60 1.96 46.31 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.40 -23.00 9.95 67.92 0.68 -22.32 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 9 O -0.24 -12.59 8.59 -22.72 -0.20 -12.79 16 10 C 0.13 5.83 6.65 22.58 0.15 5.98 16 11 C -0.19 -6.76 9.99 22.39 0.22 -6.53 16 12 C -0.04 -1.25 9.69 22.25 0.22 -1.03 16 13 C -0.17 -4.98 5.25 -19.83 -0.10 -5.08 16 14 C 0.20 5.30 5.80 85.63 0.50 5.80 16 15 N -0.73 -17.86 5.54 -482.28 -2.67 -20.53 16 16 C 0.72 20.22 8.68 179.06 1.55 21.77 16 17 O -0.64 -23.46 16.95 -3.99 -0.07 -23.53 16 18 N -0.65 -13.48 2.89 -750.57 -2.17 -15.65 16 19 C 0.11 1.48 5.13 46.58 0.24 1.72 16 20 C -0.13 -1.35 6.50 32.58 0.21 -1.14 16 21 C -0.13 -1.45 6.46 32.23 0.21 -1.24 16 22 C 0.13 2.13 5.24 46.24 0.24 2.37 16 23 C -0.12 -1.33 6.49 32.43 0.21 -1.12 16 24 C -0.12 -1.20 6.49 32.42 0.21 -0.99 16 25 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 26 C -0.24 -9.92 9.17 22.39 0.21 -9.71 16 27 H 0.29 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 29 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 31 H 0.06 1.71 8.08 -2.39 -0.02 1.70 16 32 H 0.40 8.54 7.24 -92.71 -0.67 7.86 16 33 H 0.12 1.42 7.23 -2.39 -0.02 1.40 16 34 H 0.10 0.61 7.88 -2.39 -0.02 0.59 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.66 7.85 -2.39 -0.02 0.64 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 0.59 7.85 -2.39 -0.02 0.58 16 41 H 0.10 0.53 7.88 -2.39 -0.02 0.51 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 44 H 0.11 5.12 5.64 -2.91 -0.02 5.11 16 Total: -1.00 -71.82 360.92 2.93 -68.88 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.35 Total: 23.12 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.42 Total: -11.86 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -4.54 Total: -90.14 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.26 Total: -36.32 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.96 Total: 46.31 kcal Total: -71.82 2.93 -68.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727942140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.691 kcal (2) G-P(sol) polarization free energy of solvation -71.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds