Wall clock time and date at job start Tue Mar 31 2020 11:30:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31558 * 1
3 3 Si 1.86795 * 120.00260 * 2 1
4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1
5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1
6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1
7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1
9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1
10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2
11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7
12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9
13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10
14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11
15 15 N 1.46507 * 109.46761 * 270.02289 * 14 13 12
16 16 C 1.34776 * 119.99610 * 180.02562 * 15 14 13
17 17 O 1.21587 * 120.00113 * 359.97438 * 16 15 14
18 18 N 1.34774 * 119.99873 * 179.97438 * 16 15 14
19 19 C 1.50242 * 130.83617 * 359.66201 * 18 16 15
20 20 C 1.56865 * 100.58651 * 234.62948 * 19 18 16
21 21 C 1.54860 * 103.35343 * 326.65748 * 20 19 18
22 22 C 1.50239 * 130.84169 * 179.97438 * 18 16 15
23 23 C 1.55845 * 101.05242 * 233.93312 * 22 18 16
24 24 C 1.55477 * 103.32474 * 326.97393 * 23 22 18
25 25 C 1.38302 * 120.13995 * 359.76849 * 13 12 11
26 26 C 1.38101 * 120.06877 * 359.97438 * 25 13 12
27 27 H 0.96997 * 119.99350 * 359.97438 * 1 2 3
28 28 H 1.07996 * 120.04097 * 0.02562 * 11 10 9
29 29 H 1.07996 * 119.96589 * 180.23432 * 12 11 10
30 30 H 1.09002 * 109.47040 * 30.01809 * 14 13 12
31 31 H 1.08995 * 109.46954 * 150.02268 * 14 13 12
32 32 H 0.96995 * 120.00045 * 359.97438 * 15 14 13
33 33 H 1.08997 * 115.86014 * 359.67521 * 19 18 16
34 34 H 1.08998 * 110.43837 * 208.31215 * 20 19 18
35 35 H 1.09003 * 111.03862 * 85.28972 * 20 19 18
36 36 H 1.09000 * 110.62702 * 241.78438 * 21 20 19
37 37 H 1.09001 * 110.75799 * 118.82842 * 21 20 19
38 38 H 1.09000 * 115.85543 * 359.60852 * 22 18 16
39 39 H 1.09003 * 110.62282 * 85.54853 * 23 22 18
40 40 H 1.08997 * 110.62258 * 208.56877 * 23 22 18
41 41 H 1.09001 * 110.60931 * 241.58303 * 24 23 22
42 42 H 1.08999 * 110.89464 * 118.55100 * 24 23 22
43 43 H 1.07999 * 119.96521 * 179.97438 * 25 13 12
44 44 H 1.07997 * 120.03156 * 179.97438 * 26 25 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6176 0.0000
4 1 2.4972 2.0463 -1.4000
5 1 1.4472 2.6526 0.7000
6 1 3.5472 1.4400 0.7001
7 6 2.0088 -1.2009 0.0005
8 1 1.4687 -2.1362 0.0005
9 8 3.3571 -1.2010 0.0011
10 6 3.9733 -2.4058 0.1081
11 6 5.3555 -2.4724 0.2252
12 6 5.9791 -3.6994 0.3388
13 6 5.2293 -4.8615 0.3260
14 6 5.9134 -6.1991 0.4444
15 7 6.2539 -6.6935 -0.8921
16 6 6.8762 -7.8806 -1.0330
17 8 7.1553 -8.5411 -0.0511
18 7 7.1890 -8.3357 -2.2625
19 6 6.9574 -7.7358 -3.6204
20 6 6.1934 -8.9093 -4.3273
21 6 6.8232 -10.1765 -3.6982
22 6 7.8711 -9.6016 -2.6974
23 6 9.0261 -9.0323 -3.5752
24 6 8.4009 -7.7564 -4.2065
25 6 3.8530 -4.7987 0.2042
26 6 3.2232 -3.5745 0.0955
27 1 -0.4849 0.8401 0.0004
28 1 5.9419 -1.5655 0.2316
29 1 7.0536 -3.7518 0.4337
30 1 6.8234 -6.0908 1.0345
31 1 5.2448 -6.9070 0.9342
32 1 6.0309 -6.1667 -1.6754
33 1 6.4477 -6.7725 -3.6339
34 1 6.3708 -8.8858 -5.4025
35 1 5.1253 -8.8653 -4.1144
36 1 7.3129 -10.7813 -4.4614
37 1 6.0695 -10.7616 -3.1713
38 1 8.1769 -10.2759 -1.8974
39 1 9.8870 -8.7757 -2.9578
40 1 9.3069 -9.7456 -4.3501
41 1 8.3732 -7.8399 -5.2929
42 1 8.9502 -6.8644 -3.9051
43 1 3.2703 -5.7079 0.1941
44 1 2.1485 -3.5262 0.0001
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000727942140.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:37
Heat of formation + Delta-G solvation = -28.193177 kcal
Electronic energy + Delta-G solvation = -25575.623421 eV
Core-core repulsion = 21879.366720 eV
Total energy + Delta-G solvation = -3696.256700 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.72458 -40.97229 -39.72218 -38.53510 -35.64505 -34.45699 -32.73462 -31.88566
-31.34415 -31.03754 -30.28443 -27.74419 -26.13140 -23.86076 -23.71528 -23.05863
-22.11043 -20.76635 -20.52679 -19.85916 -19.32365 -19.03292 -16.99765 -16.90287
-16.73055 -16.56347 -16.28762 -15.85887 -15.72205 -15.49230 -15.23555 -14.90649
-14.43013 -14.30499 -14.09652 -13.99070 -13.88644 -13.57486 -13.32029 -13.11911
-13.06068 -12.62578 -12.59677 -12.48245 -12.32919 -12.22782 -11.94812 -11.86735
-11.67024 -11.32916 -11.31225 -10.96767 -10.92005 -10.28150 -9.86347 -9.56875
-9.12747 -8.51609 -6.24860 0.44330 0.52307 1.32377 1.35714 1.51943
1.63097 2.14157 2.27119 2.69130 2.93503 3.05643 3.19585 3.57863
3.68512 3.77605 3.83351 3.99006 4.11736 4.13184 4.25364 4.27736
4.41400 4.42568 4.51384 4.54302 4.57657 4.60533 4.72149 4.79137
4.93015 5.06371 5.07301 5.08815 5.19695 5.21282 5.25902 5.31663
5.38254 5.42502 5.47308 5.52259 5.68866 5.77048 5.86331 6.15022
6.17756 6.82407 7.02346 7.54823 7.56626 8.59703
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.023227 B = 0.002456 C = 0.002404
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1205.180208 B =11395.631613 C =11645.994361
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C 0.011 3.989
3 Si 0.971 3.029
4 H -0.264 1.264
5 H -0.270 1.270
6 H -0.261 1.261
7 C -0.400 4.400
8 H 0.083 0.917
9 O -0.240 6.240
10 C 0.131 3.869
11 C -0.190 4.190
12 C -0.044 4.044
13 C -0.174 4.174
14 C 0.203 3.797
15 N -0.730 5.730
16 C 0.722 3.278
17 O -0.643 6.643
18 N -0.655 5.655
19 C 0.112 3.888
20 C -0.126 4.126
21 C -0.126 4.126
22 C 0.132 3.868
23 C -0.124 4.124
24 C -0.123 4.123
25 C -0.049 4.049
26 C -0.237 4.237
27 H 0.285 0.715
28 H 0.133 0.867
29 H 0.152 0.848
30 H 0.071 0.929
31 H 0.062 0.938
32 H 0.404 0.596
33 H 0.117 0.883
34 H 0.103 0.897
35 H 0.059 0.941
36 H 0.104 0.896
37 H 0.055 0.945
38 H 0.098 0.902
39 H 0.058 0.942
40 H 0.104 0.896
41 H 0.104 0.896
42 H 0.064 0.936
43 H 0.131 0.869
44 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.977 -17.131 -11.452 27.346
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.188 4.188
3 Si 0.793 3.207
4 H -0.189 1.189
5 H -0.194 1.194
6 H -0.185 1.185
7 C -0.477 4.477
8 H 0.100 0.900
9 O -0.147 6.147
10 C 0.082 3.918
11 C -0.209 4.209
12 C -0.062 4.062
13 C -0.175 4.175
14 C 0.080 3.920
15 N -0.386 5.386
16 C 0.425 3.575
17 O -0.526 6.526
18 N -0.393 5.393
19 C 0.010 3.990
20 C -0.165 4.165
21 C -0.164 4.164
22 C 0.029 3.971
23 C -0.162 4.162
24 C -0.162 4.162
25 C -0.068 4.068
26 C -0.256 4.256
27 H 0.095 0.905
28 H 0.150 0.850
29 H 0.170 0.830
30 H 0.090 0.910
31 H 0.080 0.920
32 H 0.239 0.761
33 H 0.135 0.865
34 H 0.121 0.879
35 H 0.078 0.922
36 H 0.123 0.877
37 H 0.074 0.926
38 H 0.116 0.884
39 H 0.077 0.923
40 H 0.122 0.878
41 H 0.122 0.878
42 H 0.083 0.917
43 H 0.149 0.851
44 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 18.026 -17.202 -10.588 27.073
hybrid contribution -0.843 0.948 0.108 1.273
sum 17.183 -16.254 -10.480 25.871
Atomic orbital electron populations
1.69730 1.06974 1.29686 1.49834 1.25296 0.95863 1.02229 0.95404
0.85211 0.78822 0.77329 0.79356 1.18920 1.19443 1.18541 1.20716
0.78030 0.96169 1.52737 0.89991 1.83520 1.21292 1.27454 1.82478
1.19715 0.93209 0.85029 0.93897 1.20503 0.90504 0.99718 1.10189
1.20924 1.00243 0.89884 0.95167 1.19514 0.93048 0.94431 1.10475
1.19722 0.98640 0.90648 0.83033 1.45200 1.63306 1.20155 1.09896
1.15547 0.78409 0.81361 0.82201 1.90866 1.63012 1.60204 1.38515
1.49807 1.61965 1.23897 1.03611 1.24103 0.97490 0.97711 0.79670
1.23108 0.99060 0.93401 1.00915 1.22931 0.97794 0.97445 0.98258
1.23685 0.93239 0.85030 0.95104 1.23024 0.96261 0.97966 0.98994
1.22994 0.93726 0.97949 1.01485 1.20890 0.94323 0.96240 0.95318
1.21253 1.00323 0.92950 1.11080 0.90519 0.84950 0.83035 0.91042
0.91984 0.76090 0.86532 0.87864 0.92166 0.87743 0.92620 0.88398
0.92290 0.87760 0.87811 0.91724 0.85101 0.87186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.26 13.96 21.61 0.30 -53.96 16
2 C 0.01 0.61 5.49 84.83 0.47 1.08 16
3 Si 0.97 44.35 28.62 68.60 1.96 46.31 16
4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16
5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16
7 C -0.40 -23.00 9.95 67.92 0.68 -22.32 16
8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16
9 O -0.24 -12.59 8.59 -22.72 -0.20 -12.79 16
10 C 0.13 5.83 6.65 22.58 0.15 5.98 16
11 C -0.19 -6.76 9.99 22.39 0.22 -6.53 16
12 C -0.04 -1.25 9.69 22.25 0.22 -1.03 16
13 C -0.17 -4.98 5.25 -19.83 -0.10 -5.08 16
14 C 0.20 5.30 5.80 85.63 0.50 5.80 16
15 N -0.73 -17.86 5.54 -482.28 -2.67 -20.53 16
16 C 0.72 20.22 8.68 179.06 1.55 21.77 16
17 O -0.64 -23.46 16.95 -3.99 -0.07 -23.53 16
18 N -0.65 -13.48 2.89 -750.57 -2.17 -15.65 16
19 C 0.11 1.48 5.13 46.58 0.24 1.72 16
20 C -0.13 -1.35 6.50 32.58 0.21 -1.14 16
21 C -0.13 -1.45 6.46 32.23 0.21 -1.24 16
22 C 0.13 2.13 5.24 46.24 0.24 2.37 16
23 C -0.12 -1.33 6.49 32.43 0.21 -1.12 16
24 C -0.12 -1.20 6.49 32.42 0.21 -0.99 16
25 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16
26 C -0.24 -9.92 9.17 22.39 0.21 -9.71 16
27 H 0.29 15.39 8.31 -92.71 -0.77 14.62 16
28 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16
29 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16
30 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16
31 H 0.06 1.71 8.08 -2.39 -0.02 1.70 16
32 H 0.40 8.54 7.24 -92.71 -0.67 7.86 16
33 H 0.12 1.42 7.23 -2.39 -0.02 1.40 16
34 H 0.10 0.61 7.88 -2.39 -0.02 0.59 16
35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
36 H 0.10 0.66 7.85 -2.39 -0.02 0.64 16
37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16
39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
40 H 0.10 0.59 7.85 -2.39 -0.02 0.58 16
41 H 0.10 0.53 7.88 -2.39 -0.02 0.51 16
42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
43 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16
44 H 0.11 5.12 5.64 -2.91 -0.02 5.11 16
Total: -1.00 -71.82 360.92 2.93 -68.88
By element:
Atomic # 1 Polarization: 22.77 SS G_CDS: 0.35 Total: 23.12 kcal
Atomic # 6 Polarization: -17.28 SS G_CDS: 5.42 Total: -11.86 kcal
Atomic # 7 Polarization: -85.60 SS G_CDS: -4.54 Total: -90.14 kcal
Atomic # 8 Polarization: -36.05 SS G_CDS: -0.26 Total: -36.32 kcal
Atomic # 14 Polarization: 44.35 SS G_CDS: 1.96 Total: 46.31 kcal
Total: -71.82 2.93 -68.88 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000727942140.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.691 kcal
(2) G-P(sol) polarization free energy of solvation -71.815 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.124 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.193 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds