Wall clock time and date at job start Tue Mar 31 2020 11:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47222 * 275.41275 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.41328 * 3 2 1 6 6 H 1.48504 * 109.47122 * 155.41333 * 3 2 1 7 7 C 1.39950 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00124 * 341.70982 * 7 2 1 9 9 C 1.41389 * 119.99929 * 161.71911 * 7 2 1 10 10 C 1.40723 * 120.24459 * 330.23064 * 9 7 2 11 11 C 1.37613 * 119.74624 * 179.70688 * 10 9 7 12 12 C 1.38632 * 120.24831 * 0.27238 * 11 10 9 13 13 C 1.50698 * 119.74922 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47532 * 90.00165 * 13 12 11 15 15 C 1.46849 * 110.99623 * 294.35366 * 14 13 12 16 16 C 1.53138 * 109.46060 * 173.67695 * 15 14 13 17 17 C 1.52589 * 109.30934 * 58.32236 * 16 15 14 18 18 C 1.53641 * 110.25964 * 181.51511 * 17 16 15 19 19 N 1.47225 * 103.58227 * 241.08775 * 18 17 16 20 20 C 1.34080 * 108.85124 * 0.02562 * 19 18 17 21 21 O 1.21508 * 123.08977 * 179.97438 * 20 19 18 22 22 O 1.33928 * 113.81519 * 359.97438 * 20 19 18 23 23 C 1.52587 * 110.40590 * 303.60275 * 17 16 15 24 24 C 1.46838 * 111.00263 * 170.00145 * 14 13 12 25 25 C 1.38642 * 120.50408 * 0.02562 * 12 11 10 26 26 C 1.37621 * 120.24331 * 0.02562 * 25 12 11 27 27 H 0.97002 * 119.99654 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.12289 * 359.97389 * 10 9 7 29 29 H 1.08004 * 119.87781 * 180.30104 * 11 10 9 30 30 H 1.09002 * 109.47196 * 209.99780 * 13 12 11 31 31 H 1.09001 * 109.47224 * 329.99990 * 13 12 11 32 32 H 1.08997 * 109.47531 * 293.67529 * 15 14 13 33 33 H 1.09000 * 109.47222 * 53.68434 * 15 14 13 34 34 H 1.09007 * 109.49645 * 298.37392 * 16 15 14 35 35 H 1.08999 * 109.52773 * 178.29228 * 16 15 14 36 36 H 1.08999 * 110.60276 * 359.61370 * 18 17 16 37 37 H 1.09004 * 110.60178 * 122.41584 * 18 17 16 38 38 H 0.97008 * 125.57445 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.49660 * 296.44601 * 23 17 16 40 40 H 1.09006 * 109.52324 * 176.36375 * 23 17 16 41 41 H 1.08996 * 109.47534 * 306.31026 * 24 14 13 42 42 H 1.08997 * 109.48007 * 66.32339 * 24 14 13 43 43 H 1.08002 * 119.87533 * 179.97438 * 25 12 11 44 44 H 1.07999 * 120.12481 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4097 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5087 -2.1239 0.2926 9 6 3.3682 -1.2429 -0.3846 10 6 3.8633 -0.3107 -1.3154 11 6 5.1904 -0.3462 -1.6774 12 6 6.0375 -1.2991 -1.1331 13 6 7.4891 -1.3273 -1.5370 14 7 8.2665 -0.4719 -0.6304 15 6 7.8817 0.9376 -0.7777 16 6 8.5950 1.7752 0.2876 17 6 10.1038 1.6037 0.1375 18 6 10.8408 2.4060 1.2209 19 7 11.6506 3.3643 0.4505 20 6 11.4309 3.1645 -0.8570 21 8 11.9706 3.8178 -1.7278 22 8 10.5621 2.1785 -1.1148 23 6 10.4826 0.1281 0.2232 24 6 9.7081 -0.6562 -0.8400 25 6 5.5595 -2.2263 -0.2199 26 6 4.2356 -2.2101 0.1558 27 1 -0.4850 0.8401 -0.0004 28 1 3.2050 0.4324 -1.7407 29 1 5.5737 0.3713 -2.3879 30 1 7.8621 -2.3500 -1.4806 31 1 7.5893 -0.9598 -2.5583 32 1 8.1671 1.2905 -1.7686 33 1 6.8031 1.0346 -0.6540 34 1 8.2877 1.4414 1.2788 35 1 8.3338 2.8257 0.1602 36 1 10.1303 2.9307 1.8596 37 1 11.4788 1.7520 1.8153 38 1 12.2458 4.0312 0.8273 39 1 10.2320 -0.2550 1.2124 40 1 11.5530 0.0161 0.0502 41 1 9.9544 -1.7151 -0.7615 42 1 9.9809 -0.2921 -1.8305 43 1 6.2283 -2.9645 0.1975 44 1 3.8652 -2.9336 0.8670 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782000244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:55 Heat of formation + Delta-G solvation = -51.610738 kcal Electronic energy + Delta-G solvation = -26597.624101 eV Core-core repulsion = 22900.351939 eV Total energy + Delta-G solvation = -3697.272162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09678 -39.01316 -37.87138 -36.78728 -35.02266 -33.97713 -32.92137 -31.21846 -30.57400 -29.69394 -27.80596 -25.82244 -23.74033 -23.34922 -22.83254 -22.18325 -21.43523 -20.24682 -19.95142 -17.71870 -17.42922 -16.89956 -16.74021 -15.86185 -15.69241 -15.15832 -15.06935 -14.79715 -14.23036 -14.15183 -14.01202 -13.94790 -13.72636 -13.48895 -13.23836 -12.82356 -12.41735 -12.33462 -12.16871 -11.84412 -11.76056 -11.39695 -11.35738 -11.12479 -11.02213 -10.79354 -10.76320 -10.52280 -10.38210 -10.23471 -9.79671 -9.70305 -9.55791 -9.13932 -8.12626 -7.70060 -7.51569 -6.96657 -4.49078 2.45029 2.50430 2.52254 2.70057 3.08831 3.18941 3.21418 3.29159 3.75375 3.96385 4.07245 4.15136 4.29710 4.55994 4.77738 4.89949 4.90840 5.03188 5.23180 5.37520 5.39271 5.41161 5.43354 5.53616 5.68692 5.68828 5.83175 5.85606 6.02809 6.07596 6.11021 6.16554 6.20514 6.44230 6.56891 6.82353 6.90269 7.03856 7.17278 7.23435 7.27722 7.43133 7.60112 7.82084 7.83657 7.87688 8.13218 8.34806 8.65500 8.79540 10.05952 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.003385 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.242127 B = 8268.771653 C = 9077.702090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.243 1.243 7 C -0.449 4.449 8 H 0.090 0.910 9 C 0.096 3.904 10 C -0.239 4.239 11 C -0.070 4.070 12 C -0.210 4.210 13 C 0.120 3.880 14 N -0.532 5.532 15 C 0.053 3.947 16 C -0.115 4.115 17 C 0.096 3.904 18 C 0.073 3.927 19 N -0.739 5.739 20 C 0.643 3.357 21 O -0.530 6.530 22 O -0.314 6.314 23 C -0.112 4.112 24 C 0.054 3.946 25 C -0.058 4.058 26 C -0.212 4.212 27 H 0.285 0.715 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.035 0.965 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.433 0.567 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.093 0.907 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.438 3.458 4.685 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.167 1.167 7 C -0.477 4.477 8 H 0.108 0.892 9 C 0.093 3.907 10 C -0.258 4.258 11 C -0.089 4.089 12 C -0.211 4.211 13 C -0.006 4.006 14 N -0.257 5.257 15 C -0.074 4.074 16 C -0.153 4.153 17 C 0.059 3.941 18 C -0.052 4.052 19 N -0.412 5.412 20 C 0.396 3.604 21 O -0.415 6.415 22 O -0.224 6.224 23 C -0.150 4.150 24 C -0.074 4.074 25 C -0.077 4.077 26 C -0.231 4.231 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.276 0.724 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.111 0.889 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.127 3.508 4.415 19.941 hybrid contribution 0.584 1.375 -0.478 1.568 sum 19.710 4.883 3.937 20.684 Atomic orbital electron populations 1.69702 1.08134 1.30223 1.35310 1.26164 0.94685 1.01772 0.90861 0.86303 0.81330 0.79750 0.78745 1.19769 1.21966 1.16657 1.19518 0.93340 0.96052 1.38803 0.89242 1.17733 0.92919 0.90801 0.89287 1.20983 0.95468 1.04974 1.04359 1.20456 0.93658 0.96653 0.98107 1.18854 0.93051 1.02407 1.06830 1.20713 0.91622 0.95930 0.92316 1.62052 1.02887 1.06391 1.54332 1.22092 1.01575 0.87388 0.96388 1.21895 0.90130 1.01013 1.02237 1.22979 0.96522 0.94827 0.79798 1.22947 0.95277 0.92035 0.94906 1.46014 1.49192 1.39804 1.06151 1.18685 0.78594 0.79704 0.83398 1.91065 1.52606 1.49279 1.48559 1.87345 1.56309 1.46630 1.32151 1.21852 1.00187 0.90906 1.02069 1.22024 0.88619 0.99983 0.96794 1.20437 0.94853 0.96789 0.95648 1.21008 0.93159 1.04068 1.04891 0.90493 0.88424 0.89342 0.91289 0.95484 0.94655 0.88686 0.88321 0.90604 0.88584 0.88676 0.72441 0.88408 0.90702 0.90310 0.94492 0.88859 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.45 13.93 55.55 0.77 -20.68 16 2 C 0.08 2.18 5.40 -17.34 -0.09 2.08 16 3 Si 0.91 20.52 24.52 -169.99 -4.17 16.35 16 4 H -0.27 -5.98 6.71 56.52 0.38 -5.60 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.24 -5.53 6.86 56.52 0.39 -5.14 16 7 C -0.45 -11.97 9.57 -37.74 -0.36 -12.33 16 8 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 9 C 0.10 2.36 5.11 -106.82 -0.55 1.82 16 10 C -0.24 -5.59 7.18 -38.87 -0.28 -5.87 16 11 C -0.07 -1.44 7.82 -39.66 -0.31 -1.75 16 12 C -0.21 -3.98 4.91 -104.33 -0.51 -4.50 16 13 C 0.12 1.85 5.11 -4.97 -0.03 1.83 16 14 N -0.53 -7.30 4.63 -235.99 -1.09 -8.39 16 15 C 0.05 0.75 5.07 -3.78 -0.02 0.73 16 16 C -0.11 -1.23 4.94 -26.87 -0.13 -1.36 16 17 C 0.10 0.91 0.92 -90.71 -0.08 0.82 16 18 C 0.07 0.46 7.34 -3.31 -0.02 0.43 16 19 N -0.74 -5.97 6.41 -64.81 -0.42 -6.39 16 20 C 0.64 8.31 9.16 53.74 0.49 8.80 16 21 O -0.53 -8.95 18.04 -19.10 -0.34 -9.30 16 22 O -0.31 -4.07 9.87 -38.23 -0.38 -4.45 16 23 C -0.11 -0.97 4.94 -26.87 -0.13 -1.10 16 24 C 0.05 0.60 5.38 -3.78 -0.02 0.58 16 25 C -0.06 -1.16 9.67 -39.66 -0.38 -1.54 16 26 C -0.21 -4.76 9.80 -38.87 -0.38 -5.14 16 27 H 0.28 6.83 8.30 -40.82 -0.34 6.50 16 28 H 0.10 2.32 4.73 -52.49 -0.25 2.07 16 29 H 0.09 1.65 7.94 -52.48 -0.42 1.24 16 30 H 0.07 0.98 7.92 -51.93 -0.41 0.56 16 31 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.04 0.52 7.95 -51.93 -0.41 0.11 16 33 H 0.09 1.55 5.71 -51.93 -0.30 1.26 16 34 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.46 7.71 -51.93 -0.40 0.06 16 37 H 0.10 0.38 7.71 -51.93 -0.40 -0.02 16 38 H 0.43 2.45 8.96 -40.82 -0.37 2.08 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 42 H 0.04 0.46 7.95 -51.93 -0.41 0.05 16 43 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -30.69 348.10 -9.52 -40.21 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.33 Total: 3.88 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.81 Total: -16.49 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.74 Total: -35.46 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.72 Total: -13.74 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.17 Total: 16.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.69 -9.52 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782000244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.402 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds