Wall clock time and date at job start Tue Mar 31 2020 11:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47222 * 275.41275 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.41328 * 3 2 1 6 6 H 1.48504 * 109.47122 * 155.41333 * 3 2 1 7 7 C 1.39950 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00124 * 341.70982 * 7 2 1 9 9 C 1.41389 * 119.99929 * 161.71911 * 7 2 1 10 10 C 1.40723 * 120.24459 * 330.23064 * 9 7 2 11 11 C 1.37613 * 119.74624 * 179.70688 * 10 9 7 12 12 C 1.38632 * 120.24831 * 0.27238 * 11 10 9 13 13 C 1.50698 * 119.74922 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47532 * 90.00165 * 13 12 11 15 15 C 1.46849 * 110.99623 * 294.35366 * 14 13 12 16 16 C 1.53138 * 109.46060 * 173.67695 * 15 14 13 17 17 C 1.52589 * 109.30934 * 58.32236 * 16 15 14 18 18 C 1.53641 * 110.25964 * 181.51511 * 17 16 15 19 19 N 1.47225 * 103.58227 * 241.08775 * 18 17 16 20 20 C 1.34080 * 108.85124 * 0.02562 * 19 18 17 21 21 O 1.21508 * 123.08977 * 179.97438 * 20 19 18 22 22 O 1.33928 * 113.81519 * 359.97438 * 20 19 18 23 23 C 1.52587 * 110.40590 * 303.60275 * 17 16 15 24 24 C 1.46838 * 111.00263 * 170.00145 * 14 13 12 25 25 C 1.38642 * 120.50408 * 0.02562 * 12 11 10 26 26 C 1.37621 * 120.24331 * 0.02562 * 25 12 11 27 27 H 0.97002 * 119.99654 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.12289 * 359.97389 * 10 9 7 29 29 H 1.08004 * 119.87781 * 180.30104 * 11 10 9 30 30 H 1.09002 * 109.47196 * 209.99780 * 13 12 11 31 31 H 1.09001 * 109.47224 * 329.99990 * 13 12 11 32 32 H 1.08997 * 109.47531 * 293.67529 * 15 14 13 33 33 H 1.09000 * 109.47222 * 53.68434 * 15 14 13 34 34 H 1.09007 * 109.49645 * 298.37392 * 16 15 14 35 35 H 1.08999 * 109.52773 * 178.29228 * 16 15 14 36 36 H 1.08999 * 110.60276 * 359.61370 * 18 17 16 37 37 H 1.09004 * 110.60178 * 122.41584 * 18 17 16 38 38 H 0.97008 * 125.57445 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.49660 * 296.44601 * 23 17 16 40 40 H 1.09006 * 109.52324 * 176.36375 * 23 17 16 41 41 H 1.08996 * 109.47534 * 306.31026 * 24 14 13 42 42 H 1.08997 * 109.48007 * 66.32339 * 24 14 13 43 43 H 1.08002 * 119.87533 * 179.97438 * 25 12 11 44 44 H 1.07999 * 120.12481 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4097 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5087 -2.1239 0.2926 9 6 3.3682 -1.2429 -0.3846 10 6 3.8633 -0.3107 -1.3154 11 6 5.1904 -0.3462 -1.6774 12 6 6.0375 -1.2991 -1.1331 13 6 7.4891 -1.3273 -1.5370 14 7 8.2665 -0.4719 -0.6304 15 6 7.8817 0.9376 -0.7777 16 6 8.5950 1.7752 0.2876 17 6 10.1038 1.6037 0.1375 18 6 10.8408 2.4060 1.2209 19 7 11.6506 3.3643 0.4505 20 6 11.4309 3.1645 -0.8570 21 8 11.9706 3.8178 -1.7278 22 8 10.5621 2.1785 -1.1148 23 6 10.4826 0.1281 0.2232 24 6 9.7081 -0.6562 -0.8400 25 6 5.5595 -2.2263 -0.2199 26 6 4.2356 -2.2101 0.1558 27 1 -0.4850 0.8401 -0.0004 28 1 3.2050 0.4324 -1.7407 29 1 5.5737 0.3713 -2.3879 30 1 7.8621 -2.3500 -1.4806 31 1 7.5893 -0.9598 -2.5583 32 1 8.1671 1.2905 -1.7686 33 1 6.8031 1.0346 -0.6540 34 1 8.2877 1.4414 1.2788 35 1 8.3338 2.8257 0.1602 36 1 10.1303 2.9307 1.8596 37 1 11.4788 1.7520 1.8153 38 1 12.2458 4.0312 0.8273 39 1 10.2320 -0.2550 1.2124 40 1 11.5530 0.0161 0.0502 41 1 9.9544 -1.7151 -0.7615 42 1 9.9809 -0.2921 -1.8305 43 1 6.2283 -2.9645 0.1975 44 1 3.8652 -2.9336 0.8670 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782000244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:54 Heat of formation + Delta-G solvation = -74.234251 kcal Electronic energy + Delta-G solvation = -26598.605131 eV Core-core repulsion = 22900.351939 eV Total energy + Delta-G solvation = -3698.253191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.90662 -40.24306 -39.25997 -37.95183 -35.78269 -35.64319 -34.19613 -32.29706 -31.92962 -31.38074 -29.01257 -27.03481 -24.91713 -24.41277 -23.69495 -23.39077 -22.92527 -21.64558 -21.11878 -19.32125 -18.56306 -17.74824 -17.60016 -17.46203 -16.77346 -16.33424 -16.13437 -15.94903 -15.63708 -15.39966 -15.15864 -14.97955 -14.91845 -14.67065 -14.37089 -14.10106 -14.01170 -13.64604 -13.31497 -13.21430 -12.88973 -12.67314 -12.60823 -12.44265 -12.27405 -12.15562 -12.02466 -11.96222 -11.67816 -11.44788 -11.38229 -11.21885 -10.95456 -10.35118 -9.47327 -9.36303 -9.14014 -8.88592 -6.46514 0.78007 0.93466 1.26034 1.39325 1.48484 1.58012 1.72266 2.12479 2.51653 2.58207 3.10709 3.13594 3.47624 3.54577 3.61975 4.02782 4.08538 4.22153 4.27645 4.38694 4.42057 4.43414 4.48483 4.55199 4.58616 4.70398 4.72480 4.77488 4.84967 4.89598 4.96215 5.04432 5.06262 5.09709 5.13717 5.22612 5.36528 5.65318 5.79366 5.79561 5.95089 6.04926 6.18866 6.23620 6.27076 6.30901 6.46351 6.78245 6.88096 7.02358 8.20290 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.003385 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.242127 B = 8268.771653 C = 9077.702090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.047 3.953 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.488 4.488 8 H 0.055 0.945 9 C 0.074 3.926 10 C -0.250 4.250 11 C -0.075 4.075 12 C -0.182 4.182 13 C 0.121 3.879 14 N -0.531 5.531 15 C 0.052 3.948 16 C -0.112 4.112 17 C 0.090 3.910 18 C 0.078 3.922 19 N -0.718 5.718 20 C 0.638 3.362 21 O -0.584 6.584 22 O -0.338 6.338 23 C -0.107 4.107 24 C 0.052 3.948 25 C -0.055 4.055 26 C -0.221 4.221 27 H 0.292 0.708 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.445 0.555 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.020 0.980 43 H 0.129 0.871 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.404 3.576 6.174 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.167 4.167 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.171 1.171 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.071 3.929 10 C -0.269 4.269 11 C -0.094 4.094 12 C -0.183 4.183 13 C -0.006 4.006 14 N -0.255 5.255 15 C -0.076 4.076 16 C -0.150 4.150 17 C 0.053 3.947 18 C -0.046 4.046 19 N -0.391 5.391 20 C 0.391 3.609 21 O -0.473 6.473 22 O -0.248 6.248 23 C -0.145 4.145 24 C -0.076 4.076 25 C -0.074 4.074 26 C -0.240 4.240 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.290 0.710 39 H 0.139 0.861 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.038 0.962 43 H 0.147 0.853 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 23.099 3.612 5.951 24.125 hybrid contribution -0.423 1.180 -0.993 1.599 sum 22.676 4.792 4.959 23.701 Atomic orbital electron populations 1.69737 1.09197 1.31265 1.37953 1.26801 0.95271 1.04178 0.90429 0.85487 0.79922 0.76650 0.79023 1.19185 1.20545 1.17100 1.19496 0.94838 0.95466 1.41995 0.92712 1.17854 0.92541 0.92294 0.90186 1.21044 0.96672 1.04771 1.04423 1.20713 0.92765 0.97487 0.98424 1.19352 0.94975 0.99955 1.04014 1.20714 0.89424 0.97821 0.92663 1.62013 1.04425 1.05759 1.53339 1.22041 1.00354 0.88264 0.96930 1.21885 0.90983 1.00389 1.01713 1.23205 0.95836 0.95974 0.79716 1.23186 0.95774 0.91875 0.93718 1.45952 1.48663 1.39844 1.04614 1.18869 0.78370 0.79412 0.84285 1.91016 1.54671 1.51175 1.50428 1.87320 1.56347 1.46769 1.34409 1.21903 1.00697 0.89629 1.02243 1.22141 0.86800 1.01566 0.97050 1.20780 0.94050 0.97345 0.95183 1.21217 0.94273 1.03532 1.04984 0.89785 0.89313 0.87495 0.89012 0.95498 0.96289 0.91387 0.86701 0.90571 0.86313 0.85111 0.70968 0.86058 0.89047 0.88562 0.96185 0.85317 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.62 13.93 21.83 0.30 -47.32 16 2 C 0.05 2.55 5.40 85.26 0.46 3.01 16 3 Si 0.97 43.25 24.52 68.60 1.68 44.93 16 4 H -0.27 -11.51 6.71 99.48 0.67 -10.85 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.25 -11.07 6.86 99.48 0.68 -10.39 16 7 C -0.49 -27.55 9.57 23.46 0.22 -27.32 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 9 C 0.07 3.72 5.11 -21.29 -0.11 3.61 16 10 C -0.25 -11.72 7.18 22.73 0.16 -11.56 16 11 C -0.08 -2.99 7.82 22.22 0.17 -2.82 16 12 C -0.18 -6.39 4.91 -19.67 -0.10 -6.49 16 13 C 0.12 3.27 5.11 85.56 0.44 3.71 16 14 N -0.53 -12.63 4.63 -900.53 -4.17 -16.80 16 15 C 0.05 1.34 5.07 86.36 0.44 1.78 16 16 C -0.11 -2.03 4.94 30.50 0.15 -1.88 16 17 C 0.09 1.34 0.92 -10.85 -0.01 1.33 16 18 C 0.08 0.58 7.34 86.46 0.63 1.21 16 19 N -0.72 -9.15 6.41 -590.52 -3.78 -12.93 16 20 C 0.64 15.40 9.16 129.90 1.19 16.59 16 21 O -0.58 -19.63 18.04 19.65 0.35 -19.28 16 22 O -0.34 -8.10 9.87 -48.77 -0.48 -8.58 16 23 C -0.11 -1.31 4.94 30.50 0.15 -1.16 16 24 C 0.05 0.95 5.38 86.36 0.46 1.41 16 25 C -0.06 -2.03 9.67 22.22 0.21 -1.81 16 26 C -0.22 -9.81 9.80 22.73 0.22 -9.59 16 27 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 28 H 0.09 4.27 4.73 -2.91 -0.01 4.26 16 29 H 0.11 3.83 7.94 -2.91 -0.02 3.81 16 30 H 0.09 2.14 7.92 -2.39 -0.02 2.12 16 31 H 0.03 0.75 8.06 -2.39 -0.02 0.73 16 32 H 0.02 0.54 7.95 -2.39 -0.02 0.52 16 33 H 0.07 2.11 5.71 -2.39 -0.01 2.09 16 34 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.12 0.45 7.71 -2.39 -0.02 0.44 16 37 H 0.13 0.17 7.71 -2.39 -0.02 0.15 16 38 H 0.45 3.54 8.96 -92.70 -0.83 2.71 16 39 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 0.89 8.14 -2.38 -0.02 0.88 16 41 H 0.10 1.44 8.01 -2.39 -0.02 1.42 16 42 H 0.02 0.44 7.95 -2.39 -0.02 0.42 16 43 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 44 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -72.00 348.10 -1.26 -73.26 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.13 Total: 16.69 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 4.71 Total: -29.98 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -7.65 Total: -77.05 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.13 Total: -27.86 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.68 Total: 44.93 kcal Total: -72.00 -1.26 -73.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782000244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.971 kcal (2) G-P(sol) polarization free energy of solvation -72.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds