Wall clock time and date at job start Tue Mar 31 2020 11:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86805 * 119.99551 * 2 1 4 4 H 1.48502 * 109.46917 * 240.00195 * 3 2 1 5 5 H 1.48496 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46969 * 120.00349 * 3 2 1 7 7 C 1.38645 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00227 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99915 * 174.95271 * 9 7 2 11 11 C 1.38881 * 120.07221 * 5.43078 * 10 9 7 12 12 C 1.38096 * 119.93470 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06819 * 0.02801 * 12 11 10 14 14 C 1.50698 * 119.93290 * 179.97438 * 13 12 11 15 15 N 1.46495 * 109.47112 * 89.99276 * 14 13 12 16 16 C 1.34786 * 119.99847 * 179.97438 * 15 14 13 17 17 O 1.21583 * 119.99688 * 4.97766 * 16 15 14 18 18 N 1.34778 * 119.99906 * 184.97682 * 16 15 14 19 19 C 1.45657 * 119.49002 * 174.75945 * 18 16 15 20 20 C 1.51591 * 111.75001 * 141.22547 * 19 18 16 21 21 C 1.51345 * 113.20168 * 56.36520 * 20 19 18 22 22 C 1.52120 * 112.85621 * 311.86050 * 21 20 19 23 23 H 1.08997 * 115.18834 * 234.33510 * 22 21 20 24 24 C 1.53578 * 116.50768 * 91.03201 * 22 21 20 25 25 C 1.45909 * 119.49221 * 354.73201 * 18 16 15 26 26 H 1.08995 * 115.19743 * 336.26551 * 25 18 16 27 27 C 1.38297 * 120.13522 * 0.24614 * 13 12 11 28 28 C 1.38103 * 120.07147 * 359.45123 * 27 13 12 29 29 H 0.97001 * 120.00352 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03026 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.96802 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.46984 * 329.99626 * 14 13 12 33 33 H 1.08993 * 109.47232 * 210.00152 * 14 13 12 34 34 H 0.96996 * 120.00356 * 0.02562 * 15 14 13 35 35 H 1.09001 * 109.02316 * 261.80941 * 19 18 16 36 36 H 1.08999 * 109.02301 * 20.71073 * 19 18 16 37 37 H 1.09000 * 108.73444 * 177.32513 * 20 19 18 38 38 H 1.09005 * 108.73849 * 295.39884 * 20 19 18 39 39 H 1.08996 * 108.81288 * 72.72337 * 21 20 19 40 40 H 1.09003 * 108.80742 * 191.11447 * 21 20 19 41 41 H 1.09001 * 117.50939 * 142.33105 * 24 22 21 42 42 H 1.09000 * 117.51345 * 357.26594 * 24 22 21 43 43 H 1.08007 * 119.96766 * 179.70919 * 27 13 12 44 44 H 1.08005 * 120.03593 * 180.26711 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 3.1031 1.6966 -1.2126 5 1 1.2844 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 -0.1075 11 6 3.4573 -3.4391 -0.0970 12 6 4.2025 -4.5966 -0.2066 13 6 3.5688 -5.8200 -0.3271 14 6 4.3850 -7.0811 -0.4470 15 7 4.6455 -7.6230 0.8888 16 6 5.3621 -8.7560 1.0285 17 8 5.8687 -9.2787 0.0547 18 7 5.5171 -9.3093 2.2476 19 6 6.1949 -10.5926 2.3717 20 6 7.0843 -10.6419 3.5982 21 6 6.3431 -10.3476 4.8845 22 6 5.4703 -9.1051 4.7924 23 1 5.6514 -8.3530 5.5602 24 6 4.0171 -9.3198 4.3442 25 6 5.0040 -8.6134 3.4229 26 1 4.8895 -7.5353 3.3106 27 6 2.1876 -5.8878 -0.3436 28 6 1.4367 -4.7345 -0.2281 29 1 -0.4851 0.8400 0.0004 30 1 3.9527 -2.4839 -0.0042 31 1 5.2813 -4.5463 -0.1989 32 1 5.3314 -6.8559 -0.9387 33 1 3.8353 -7.8150 -1.0361 34 1 4.3017 -7.1669 1.6728 35 1 5.4481 -11.3835 2.4423 36 1 6.8055 -10.7591 1.4843 37 1 7.5281 -11.6349 3.6692 38 1 7.8845 -9.9112 3.4801 39 1 5.7127 -11.2021 5.1303 40 1 7.0699 -10.2058 5.6844 41 1 3.2483 -8.7111 4.8201 42 1 3.7168 -10.3333 4.0781 43 1 1.6955 -6.8442 -0.4426 44 1 0.3580 -4.7886 -0.2367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806716587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:46 Heat of formation + Delta-G solvation = -4.009555 kcal Electronic energy + Delta-G solvation = -25451.081029 eV Core-core repulsion = 21755.873009 eV Total energy + Delta-G solvation = -3695.208020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78894 -39.21219 -38.49450 -36.86978 -34.66048 -33.81057 -33.11685 -32.33487 -30.28647 -29.81937 -27.03052 -25.75195 -24.60802 -23.61733 -22.43561 -22.05219 -20.89072 -20.61560 -19.04809 -18.18699 -18.06521 -17.03490 -16.38544 -15.92179 -15.57924 -14.99507 -14.76000 -14.61011 -14.47738 -14.39859 -14.07561 -13.70486 -13.64920 -13.58045 -13.32541 -12.78805 -12.73052 -12.29222 -12.15508 -11.80668 -11.66395 -11.57946 -11.38982 -11.17206 -10.98645 -10.93316 -10.78699 -10.70205 -10.50562 -10.40090 -10.00379 -9.43576 -9.03104 -8.91552 -8.45675 -8.28548 -7.33521 -6.53400 -4.12460 2.01636 2.12889 2.65381 3.04214 3.08353 3.09710 3.12509 3.50352 3.85866 3.90083 4.31735 4.36222 4.49021 4.56176 4.60890 4.75469 4.98208 5.01041 5.07865 5.16855 5.24899 5.34793 5.45158 5.47765 5.50207 5.52551 5.62884 5.67191 5.75769 5.82104 5.82649 5.92249 5.94621 6.11897 6.35297 6.38578 6.57875 6.62298 6.80166 6.85589 6.97249 7.15035 7.27775 7.34769 7.71150 7.91151 7.94997 8.58021 8.91841 9.59921 10.64041 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.002446 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.508150 B =11446.681199 C =11891.516711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.214 4.214 14 C 0.196 3.804 15 N -0.735 5.735 16 C 0.706 3.294 17 O -0.593 6.593 18 N -0.598 5.598 19 C 0.130 3.870 20 C -0.131 4.131 21 C -0.088 4.088 22 C -0.157 4.157 23 H 0.113 0.887 24 C -0.186 4.186 25 C 0.082 3.918 26 H 0.125 0.875 27 C -0.053 4.053 28 C -0.196 4.196 29 H 0.272 0.728 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.556 -17.367 9.147 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.216 4.216 14 C 0.073 3.927 15 N -0.391 5.391 16 C 0.408 3.592 17 O -0.472 6.472 18 N -0.333 5.333 19 C 0.007 3.993 20 C -0.169 4.169 21 C -0.126 4.126 22 C -0.176 4.176 23 H 0.131 0.869 24 C -0.225 4.225 25 C -0.024 4.024 26 H 0.143 0.857 27 C -0.072 4.072 28 C -0.215 4.215 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.483 -17.532 8.394 22.085 hybrid contribution 0.246 1.148 0.515 1.282 sum 10.729 -16.384 8.909 21.515 Atomic orbital electron populations 1.70023 1.06008 1.27986 1.45379 1.25310 0.95855 0.98923 0.96336 0.85770 0.78729 0.79626 0.79267 1.19404 1.20207 1.19441 1.21306 0.91841 0.80741 1.53116 0.88976 1.83978 1.34481 1.11543 1.77566 1.19440 0.90322 0.88050 0.91613 1.21156 0.93766 0.98940 1.11797 1.20650 0.98398 0.91656 0.96187 1.19221 0.93566 0.93508 1.15259 1.19846 0.98371 0.92271 0.82189 1.45640 1.57179 1.25869 1.10412 1.15894 0.79600 0.80959 0.82729 1.90896 1.53904 1.65006 1.37374 1.46087 1.60429 1.22526 1.04245 1.20766 0.95684 0.83488 0.99364 1.21146 0.98811 1.02719 0.94248 1.20522 0.98343 0.96003 0.97687 1.22543 0.96733 1.00671 0.97697 0.86922 1.23580 0.92754 1.02870 1.03316 1.21314 1.01904 0.95929 0.83277 0.85708 1.20538 0.92763 0.96828 0.97068 1.20212 0.99658 0.90285 1.11329 0.91821 0.85438 0.87390 0.91682 0.91762 0.76689 0.92746 0.88836 0.90368 0.91550 0.91631 0.91161 0.87715 0.88423 0.86955 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.39 -10.67 9.49 30.88 0.29 -10.38 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.24 -4.89 9.17 -39.40 -0.36 -5.25 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.45 5.25 -104.58 -0.55 -4.00 16 14 C 0.20 2.84 5.80 -5.20 -0.03 2.81 16 15 N -0.74 -9.82 5.44 -66.42 -0.36 -10.18 16 16 C 0.71 10.20 8.24 -86.91 -0.72 9.48 16 17 O -0.59 -10.58 15.71 5.29 0.08 -10.49 16 18 N -0.60 -6.80 3.14 -174.25 -0.55 -7.35 16 19 C 0.13 1.27 6.13 -5.21 -0.03 1.24 16 20 C -0.13 -0.95 5.87 -28.28 -0.17 -1.12 16 21 C -0.09 -0.57 5.81 -28.02 -0.16 -0.73 16 22 C -0.16 -1.15 6.25 -90.87 -0.57 -1.72 16 23 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 24 C -0.19 -1.44 10.00 -26.75 -0.27 -1.71 16 25 C 0.08 0.75 5.76 -68.67 -0.40 0.35 16 26 H 0.13 1.10 6.52 -51.93 -0.34 0.76 16 27 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 28 C -0.20 -3.92 9.99 -39.39 -0.39 -4.31 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.13 2.64 5.64 -52.48 -0.30 2.35 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.40 4.77 6.20 -40.82 -0.25 4.52 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.05 7.02 -51.93 -0.36 0.69 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.40 8.04 -51.93 -0.42 -0.02 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 44 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -31.46 362.14 -10.25 -41.71 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.14 Total: 7.98 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -4.47 Total: -13.42 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.15 Total: -41.39 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.08 Total: -15.27 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.46 -10.25 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806716587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.696 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds