Wall clock time and date at job start Tue Mar 31 2020 11:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86805 * 119.99551 * 2 1 4 4 H 1.48502 * 109.46917 * 240.00195 * 3 2 1 5 5 H 1.48496 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46969 * 120.00349 * 3 2 1 7 7 C 1.38645 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00227 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99915 * 174.95271 * 9 7 2 11 11 C 1.38881 * 120.07221 * 5.43078 * 10 9 7 12 12 C 1.38096 * 119.93470 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06819 * 0.02801 * 12 11 10 14 14 C 1.50698 * 119.93290 * 179.97438 * 13 12 11 15 15 N 1.46495 * 109.47112 * 89.99276 * 14 13 12 16 16 C 1.34786 * 119.99847 * 179.97438 * 15 14 13 17 17 O 1.21583 * 119.99688 * 4.97766 * 16 15 14 18 18 N 1.34778 * 119.99906 * 184.97682 * 16 15 14 19 19 C 1.45657 * 119.49002 * 174.75945 * 18 16 15 20 20 C 1.51591 * 111.75001 * 141.22547 * 19 18 16 21 21 C 1.51345 * 113.20168 * 56.36520 * 20 19 18 22 22 C 1.52120 * 112.85621 * 311.86050 * 21 20 19 23 23 H 1.08997 * 115.18834 * 234.33510 * 22 21 20 24 24 C 1.53578 * 116.50768 * 91.03201 * 22 21 20 25 25 C 1.45909 * 119.49221 * 354.73201 * 18 16 15 26 26 H 1.08995 * 115.19743 * 336.26551 * 25 18 16 27 27 C 1.38297 * 120.13522 * 0.24614 * 13 12 11 28 28 C 1.38103 * 120.07147 * 359.45123 * 27 13 12 29 29 H 0.97001 * 120.00352 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03026 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.96802 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.46984 * 329.99626 * 14 13 12 33 33 H 1.08993 * 109.47232 * 210.00152 * 14 13 12 34 34 H 0.96996 * 120.00356 * 0.02562 * 15 14 13 35 35 H 1.09001 * 109.02316 * 261.80941 * 19 18 16 36 36 H 1.08999 * 109.02301 * 20.71073 * 19 18 16 37 37 H 1.09000 * 108.73444 * 177.32513 * 20 19 18 38 38 H 1.09005 * 108.73849 * 295.39884 * 20 19 18 39 39 H 1.08996 * 108.81288 * 72.72337 * 21 20 19 40 40 H 1.09003 * 108.80742 * 191.11447 * 21 20 19 41 41 H 1.09001 * 117.50939 * 142.33105 * 24 22 21 42 42 H 1.09000 * 117.51345 * 357.26594 * 24 22 21 43 43 H 1.08007 * 119.96766 * 179.70919 * 27 13 12 44 44 H 1.08005 * 120.03593 * 180.26711 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 3.1031 1.6966 -1.2126 5 1 1.2844 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 -0.1075 11 6 3.4573 -3.4391 -0.0970 12 6 4.2025 -4.5966 -0.2066 13 6 3.5688 -5.8200 -0.3271 14 6 4.3850 -7.0811 -0.4470 15 7 4.6455 -7.6230 0.8888 16 6 5.3621 -8.7560 1.0285 17 8 5.8687 -9.2787 0.0547 18 7 5.5171 -9.3093 2.2476 19 6 6.1949 -10.5926 2.3717 20 6 7.0843 -10.6419 3.5982 21 6 6.3431 -10.3476 4.8845 22 6 5.4703 -9.1051 4.7924 23 1 5.6514 -8.3530 5.5602 24 6 4.0171 -9.3198 4.3442 25 6 5.0040 -8.6134 3.4229 26 1 4.8895 -7.5353 3.3106 27 6 2.1876 -5.8878 -0.3436 28 6 1.4367 -4.7345 -0.2281 29 1 -0.4851 0.8400 0.0004 30 1 3.9527 -2.4839 -0.0042 31 1 5.2813 -4.5463 -0.1989 32 1 5.3314 -6.8559 -0.9387 33 1 3.8353 -7.8150 -1.0361 34 1 4.3017 -7.1669 1.6728 35 1 5.4481 -11.3835 2.4423 36 1 6.8055 -10.7591 1.4843 37 1 7.5281 -11.6349 3.6692 38 1 7.8845 -9.9112 3.4801 39 1 5.7127 -11.2021 5.1303 40 1 7.0699 -10.2058 5.6844 41 1 3.2483 -8.7111 4.8201 42 1 3.7168 -10.3333 4.0781 43 1 1.6955 -6.8442 -0.4426 44 1 0.3580 -4.7886 -0.2367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806716587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:45 Heat of formation + Delta-G solvation = -22.578222 kcal Electronic energy + Delta-G solvation = -25451.886227 eV Core-core repulsion = 21755.873009 eV Total energy + Delta-G solvation = -3696.013218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71988 -40.81557 -39.48006 -38.46764 -35.84639 -34.68473 -34.33570 -33.79939 -31.84094 -31.22953 -28.01938 -27.38301 -25.96822 -24.34836 -23.64643 -23.23524 -22.17681 -21.64124 -20.09111 -19.82778 -18.99381 -18.75126 -17.39224 -16.87506 -16.58056 -16.33249 -16.30014 -15.92760 -15.66526 -15.45149 -15.36304 -15.06525 -14.93250 -14.57965 -14.36535 -14.19733 -14.06484 -13.65621 -13.31437 -13.02755 -12.95663 -12.59361 -12.48710 -12.37634 -12.24801 -12.19443 -12.13433 -11.74644 -11.61589 -11.44496 -11.20583 -10.80486 -10.74113 -10.17717 -9.81459 -9.31098 -9.02298 -8.48048 -6.16373 0.52060 0.57610 1.36050 1.45220 1.51823 1.66933 2.01105 2.17389 2.71695 2.81200 2.97129 3.20025 3.48954 3.70399 3.75439 3.87406 3.91848 3.98628 4.03052 4.10046 4.17301 4.35206 4.45995 4.48533 4.56619 4.68952 4.71730 4.80517 4.85939 4.88211 4.94902 5.03826 5.06754 5.14276 5.20550 5.24977 5.26377 5.37337 5.44595 5.51940 5.59686 5.68753 5.75465 5.92491 6.01373 6.15516 6.91706 6.96705 7.49470 7.75643 8.74496 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.002446 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.508150 B =11446.681199 C =11891.516711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.415 4.415 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.243 4.243 12 C -0.045 4.045 13 C -0.182 4.182 14 C 0.202 3.798 15 N -0.729 5.729 16 C 0.702 3.298 17 O -0.632 6.632 18 N -0.593 5.593 19 C 0.125 3.875 20 C -0.124 4.124 21 C -0.089 4.089 22 C -0.146 4.146 23 H 0.126 0.874 24 C -0.179 4.179 25 C 0.056 3.944 26 H 0.127 0.873 27 C -0.042 4.042 28 C -0.203 4.203 29 H 0.273 0.727 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.405 0.595 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.146 0.854 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.690 -19.141 10.423 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.262 4.262 12 C -0.063 4.063 13 C -0.183 4.183 14 C 0.079 3.921 15 N -0.385 5.385 16 C 0.404 3.596 17 O -0.514 6.514 18 N -0.327 5.327 19 C 0.003 3.997 20 C -0.162 4.162 21 C -0.126 4.126 22 C -0.165 4.165 23 H 0.144 0.856 24 C -0.218 4.218 25 C -0.049 4.049 26 H 0.145 0.855 27 C -0.060 4.060 28 C -0.223 4.223 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.164 0.836 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.646 -19.365 9.716 25.086 hybrid contribution -0.284 1.287 0.127 1.324 sum 12.362 -18.078 9.843 24.011 Atomic orbital electron populations 1.70169 1.08017 1.28942 1.48514 1.26568 0.96811 1.02728 0.95766 0.84671 0.77419 0.74353 0.79953 1.18275 1.19740 1.18031 1.21793 0.92576 0.81351 1.53329 0.87914 1.83949 1.36009 1.12629 1.80797 1.19984 0.91600 0.87957 0.93203 1.21235 0.93007 0.99999 1.11958 1.20926 0.99759 0.90774 0.94881 1.19469 0.93485 0.93955 1.11419 1.19737 0.98150 0.91262 0.82967 1.45396 1.57142 1.25829 1.10170 1.16020 0.79441 0.80930 0.83224 1.90871 1.55485 1.66046 1.38957 1.46125 1.59900 1.22765 1.03952 1.20897 0.95970 0.82985 0.99894 1.21116 0.98028 1.03702 0.93387 1.20575 0.98659 0.95868 0.97543 1.22691 0.96463 1.01095 0.96281 0.85613 1.23602 0.93268 1.02601 1.02313 1.21522 1.03933 0.96072 0.83341 0.85534 1.20865 0.92990 0.97006 0.95187 1.20437 1.00085 0.90372 1.11362 0.91783 0.86112 0.84471 0.91477 0.91168 0.75748 0.92066 0.90780 0.88368 0.92405 0.90800 0.89635 0.86778 0.88668 0.83605 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 13.67 21.61 0.30 -55.03 16 2 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 3 Si 1.02 41.78 29.55 68.60 2.03 43.81 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.41 -23.44 9.49 67.92 0.64 -22.80 16 8 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 9 O -0.23 -13.27 9.76 -22.75 -0.22 -13.49 16 10 C 0.12 5.86 6.65 22.58 0.15 6.01 16 11 C -0.24 -9.97 9.17 22.39 0.21 -9.76 16 12 C -0.04 -1.45 9.69 22.25 0.22 -1.23 16 13 C -0.18 -5.35 5.25 -19.83 -0.10 -5.45 16 14 C 0.20 5.24 5.80 85.63 0.50 5.74 16 15 N -0.73 -17.64 5.44 -482.31 -2.62 -20.26 16 16 C 0.70 19.09 8.24 179.05 1.48 20.56 16 17 O -0.63 -21.87 15.71 -3.98 -0.06 -21.93 16 18 N -0.59 -12.45 3.14 -823.45 -2.58 -15.03 16 19 C 0.13 2.26 6.13 86.08 0.53 2.79 16 20 C -0.12 -1.49 5.87 29.59 0.17 -1.32 16 21 C -0.09 -0.87 5.81 29.76 0.17 -0.69 16 22 C -0.15 -1.70 6.25 -10.96 -0.07 -1.77 16 23 H 0.13 1.16 8.14 -2.39 -0.02 1.15 16 24 C -0.18 -2.28 10.00 30.58 0.31 -1.97 16 25 C 0.06 0.90 5.76 44.83 0.26 1.16 16 26 H 0.13 1.93 6.52 -2.39 -0.02 1.92 16 27 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 28 C -0.20 -8.14 9.99 22.39 0.22 -7.92 16 29 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 31 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 33 H 0.07 1.81 8.08 -2.39 -0.02 1.79 16 34 H 0.41 8.63 6.20 -92.71 -0.57 8.05 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.63 7.02 -2.39 -0.02 1.62 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 0.64 8.04 -2.39 -0.02 0.62 16 40 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 44 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -72.46 362.14 2.64 -69.82 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.45 Total: 30.55 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 5.36 Total: -18.45 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -4.91 Total: -90.32 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.28 Total: -35.42 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -72.46 2.64 -69.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806716587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.243 kcal (2) G-P(sol) polarization free energy of solvation -72.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds