Wall clock time and date at job start Tue Mar 31 2020 11:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 C 1.50700 * 119.75032 * 180.23096 * 12 11 10 14 14 N 1.46900 * 109.47223 * 90.00166 * 13 12 11 15 15 C 1.47843 * 110.99913 * 290.84929 * 14 13 12 16 16 C 1.54906 * 104.79315 * 213.63338 * 15 14 13 17 17 C 1.55143 * 101.65553 * 37.06723 * 16 15 14 18 18 H 1.09002 * 110.85463 * 82.79685 * 17 16 15 19 19 N 1.46501 * 110.70684 * 205.96288 * 17 16 15 20 20 C 1.47086 * 125.55996 * 233.59705 * 19 17 16 21 21 C 1.54086 * 103.77938 * 179.97438 * 20 19 17 22 22 O 1.45700 * 104.00498 * 359.97438 * 21 20 19 23 23 C 1.33761 * 109.47842 * 359.75893 * 22 21 20 24 24 O 1.21516 * 123.07632 * 180.23820 * 23 22 21 25 25 C 1.47442 * 111.00412 * 170.00045 * 14 13 12 26 26 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 27 27 C 1.37612 * 120.24660 * 359.97438 * 26 12 11 28 28 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 30 30 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 31 31 H 1.09002 * 109.47545 * 210.00442 * 13 12 11 32 32 H 1.09002 * 109.47292 * 330.00330 * 13 12 11 33 33 H 1.08998 * 110.37091 * 332.45748 * 15 14 13 34 34 H 1.09000 * 110.38117 * 94.80648 * 15 14 13 35 35 H 1.08999 * 110.99350 * 278.97756 * 16 15 14 36 36 H 1.09007 * 110.99475 * 155.16080 * 16 15 14 37 37 H 1.08999 * 110.56708 * 298.55476 * 20 19 17 38 38 H 1.09001 * 110.56742 * 61.25608 * 20 19 17 39 39 H 1.08997 * 110.52608 * 118.63253 * 21 20 19 40 40 H 1.09000 * 110.52312 * 241.23275 * 21 20 19 41 41 H 1.09003 * 109.88916 * 242.66646 * 25 14 13 42 42 H 1.09001 * 109.88391 * 3.69196 * 25 14 13 43 43 H 1.08003 * 119.87153 * 179.97438 * 26 12 11 44 44 H 1.08001 * 120.12580 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 6 -0.6325 -6.0230 1.5170 14 7 -1.6851 -6.3329 0.5403 15 6 -2.7931 -5.3581 0.6283 16 6 -4.0663 -6.1753 0.2955 17 6 -3.7516 -7.5353 0.9727 18 1 -3.9923 -7.5045 2.0354 19 7 -4.4757 -8.6233 0.3108 20 6 -5.3533 -9.5969 0.9780 21 6 -5.8437 -10.4976 -0.1721 22 8 -5.1981 -9.9424 -1.3544 23 6 -4.4518 -8.8898 -1.0023 24 8 -3.8075 -8.2372 -1.7996 25 6 -2.2303 -7.6847 0.7620 26 6 1.1746 -4.8057 0.2845 27 6 1.8205 -3.6493 -0.0886 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1469 -1.4129 1.5758 30 1 -1.2682 -3.4991 2.2269 31 1 0.0887 -6.8398 1.5455 32 1 -1.0781 -5.8974 2.5038 33 1 -2.8583 -4.9476 1.6359 34 1 -2.6542 -4.5588 -0.0997 35 1 -4.1840 -6.2936 -0.7816 36 1 -4.9515 -5.7157 0.7353 37 1 -4.7928 -10.1800 1.7087 38 1 -6.1926 -9.0915 1.4559 39 1 -5.5273 -11.5282 -0.0119 40 1 -6.9283 -10.4420 -0.2652 41 1 -2.0363 -8.3103 -0.1094 42 1 -1.7729 -8.1286 1.6462 43 1 1.5323 -5.7606 -0.0713 44 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852438551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:53 Heat of formation + Delta-G solvation = -34.127397 kcal Electronic energy + Delta-G solvation = -26048.553235 eV Core-core repulsion = 22352.039208 eV Total energy + Delta-G solvation = -3696.514028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79375 -39.03710 -37.47077 -37.02377 -35.33755 -33.74098 -31.82693 -30.02801 -29.57393 -29.07702 -28.14290 -26.24541 -23.99006 -23.63156 -22.69789 -21.24531 -20.56312 -20.18457 -19.70064 -17.63040 -17.44524 -17.23385 -16.79839 -15.90194 -15.23300 -15.16223 -14.74185 -14.42258 -14.19755 -14.06155 -13.93409 -13.71648 -13.44616 -13.04614 -12.84348 -12.67795 -12.37321 -12.23470 -11.89437 -11.66084 -11.57058 -11.42047 -11.10265 -11.07754 -10.97380 -10.87530 -10.86330 -10.43905 -10.29780 -10.20875 -9.51927 -9.31762 -9.11578 -9.05745 -7.86267 -7.37398 -7.21766 -6.71082 -4.28882 2.18849 2.62616 2.78999 3.09502 3.13317 3.15585 3.20206 3.23763 3.78924 3.96895 4.22407 4.26020 4.41591 4.59646 4.73463 4.80043 4.86430 4.87900 5.07116 5.24875 5.29355 5.47952 5.65166 5.74852 5.79917 5.88141 5.92780 5.99519 6.18843 6.27596 6.40911 6.45438 6.48231 6.51526 7.00536 7.12923 7.18259 7.29085 7.41789 7.44892 7.51118 7.68612 7.93422 7.95420 8.11531 8.20534 8.37080 8.70094 8.95718 9.04372 10.23441 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.002523 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.388466 B =11096.347066 C =11285.043085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.167 4.167 11 C -0.093 4.093 12 C -0.207 4.207 13 C 0.115 3.885 14 N -0.513 5.513 15 C 0.057 3.943 16 C -0.146 4.146 17 C 0.156 3.844 18 H 0.100 0.900 19 N -0.624 5.624 20 C 0.064 3.936 21 C 0.042 3.958 22 O -0.332 6.332 23 C 0.638 3.362 24 O -0.500 6.500 25 C 0.034 3.966 26 C -0.069 4.069 27 C -0.227 4.227 28 H 0.279 0.721 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.382 -16.752 6.553 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.186 4.186 11 C -0.112 4.112 12 C -0.208 4.208 13 C -0.011 4.011 14 N -0.237 5.237 15 C -0.071 4.071 16 C -0.184 4.184 17 C 0.054 3.946 18 H 0.118 0.882 19 N -0.373 5.373 20 C -0.059 4.059 21 C -0.033 4.033 22 O -0.243 6.243 23 C 0.391 3.609 24 O -0.383 6.383 25 C -0.095 4.095 26 C -0.087 4.087 27 C -0.247 4.247 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.034 -16.323 5.406 21.577 hybrid contribution -0.204 0.655 0.961 1.181 sum -13.238 -15.668 6.367 21.477 Atomic orbital electron populations 1.69839 1.07552 1.29031 1.35416 1.25896 0.94696 1.01223 0.92321 0.86351 0.80774 0.80872 0.79020 1.19614 1.20110 1.18482 1.19584 0.98127 0.91351 1.40241 0.90554 1.17613 0.91045 0.91990 0.88392 1.21253 0.99561 0.96568 1.01217 1.20486 0.98095 0.92818 0.99754 1.18810 1.00800 0.92433 1.08806 1.20973 0.92470 0.96613 0.91048 1.63729 1.09989 0.99881 1.50142 1.22901 0.87814 0.95568 1.00776 1.23195 0.98421 0.93514 1.03312 1.22252 0.91978 0.84532 0.95855 0.88206 1.48083 1.49624 1.32644 1.06903 1.22799 0.95355 0.91328 0.96449 1.24228 0.99240 0.98531 0.81340 1.87305 1.59919 1.43557 1.33479 1.18539 0.79457 0.79958 0.82900 1.91132 1.43273 1.49808 1.54064 1.23185 0.91532 0.93601 1.01191 1.20326 0.95347 0.96357 0.96713 1.20967 1.04006 0.92941 1.06780 0.91005 0.86639 0.90051 0.91822 0.95760 0.93584 0.89359 0.88747 0.90903 0.89136 0.89178 0.87743 0.87784 0.90047 0.92808 0.89553 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.84 10.97 55.55 0.61 -20.23 16 2 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.91 18.97 29.60 -169.99 -5.03 13.94 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.56 9.05 -37.74 -0.34 -12.91 16 8 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 9 C 0.11 3.05 5.57 -106.83 -0.60 2.46 16 10 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 11 C -0.09 -2.14 8.88 -39.66 -0.35 -2.50 16 12 C -0.21 -4.54 5.12 -104.33 -0.53 -5.07 16 13 C 0.12 2.06 4.71 -4.98 -0.02 2.03 16 14 N -0.51 -8.91 5.15 -232.70 -1.20 -10.10 16 15 C 0.06 0.93 5.60 -2.30 -0.01 0.92 16 16 C -0.15 -1.97 6.54 -24.59 -0.16 -2.13 16 17 C 0.16 1.78 3.67 -66.11 -0.24 1.53 16 18 H 0.10 0.87 8.13 -51.93 -0.42 0.45 16 19 N -0.62 -6.47 2.96 -169.16 -0.50 -6.98 16 20 C 0.06 0.33 7.69 -3.16 -0.02 0.31 16 21 C 0.04 0.21 8.23 37.72 0.31 0.52 16 22 O -0.33 -3.77 11.09 -37.81 -0.42 -4.19 16 23 C 0.64 8.81 7.99 53.71 0.43 9.24 16 24 O -0.50 -9.30 15.08 -19.12 -0.29 -9.58 16 25 C 0.03 0.48 6.38 -2.84 -0.02 0.46 16 26 C -0.07 -1.60 9.67 -39.66 -0.38 -1.98 16 27 C -0.23 -5.78 9.80 -38.88 -0.38 -6.16 16 28 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 29 H 0.12 3.12 6.17 -52.49 -0.32 2.79 16 30 H 0.08 1.70 7.46 -52.49 -0.39 1.30 16 31 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 32 H 0.02 0.40 7.79 -51.93 -0.40 -0.01 16 33 H 0.05 0.71 6.97 -51.93 -0.36 0.35 16 34 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 35 H 0.09 1.54 6.19 -51.93 -0.32 1.22 16 36 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 1.32 6.81 -51.93 -0.35 0.97 16 42 H 0.05 0.66 7.55 -51.93 -0.39 0.26 16 43 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 44 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -32.59 355.10 -10.55 -43.14 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.32 Total: 4.77 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.76 Total: -16.11 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -1.09 Total: -37.31 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.71 Total: -13.77 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.59 -10.55 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852438551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.012 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds