Wall clock time and date at job start Tue Mar 31 2020 11:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 C 1.50700 * 119.75032 * 180.23096 * 12 11 10 14 14 N 1.46900 * 109.47223 * 90.00166 * 13 12 11 15 15 C 1.47843 * 110.99913 * 290.84929 * 14 13 12 16 16 C 1.54906 * 104.79315 * 213.63338 * 15 14 13 17 17 C 1.55143 * 101.65553 * 37.06723 * 16 15 14 18 18 H 1.09002 * 110.85463 * 82.79685 * 17 16 15 19 19 N 1.46501 * 110.70684 * 205.96288 * 17 16 15 20 20 C 1.47086 * 125.55996 * 233.59705 * 19 17 16 21 21 C 1.54086 * 103.77938 * 179.97438 * 20 19 17 22 22 O 1.45700 * 104.00498 * 359.97438 * 21 20 19 23 23 C 1.33761 * 109.47842 * 359.75893 * 22 21 20 24 24 O 1.21516 * 123.07632 * 180.23820 * 23 22 21 25 25 C 1.47442 * 111.00412 * 170.00045 * 14 13 12 26 26 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 27 27 C 1.37612 * 120.24660 * 359.97438 * 26 12 11 28 28 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 30 30 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 31 31 H 1.09002 * 109.47545 * 210.00442 * 13 12 11 32 32 H 1.09002 * 109.47292 * 330.00330 * 13 12 11 33 33 H 1.08998 * 110.37091 * 332.45748 * 15 14 13 34 34 H 1.09000 * 110.38117 * 94.80648 * 15 14 13 35 35 H 1.08999 * 110.99350 * 278.97756 * 16 15 14 36 36 H 1.09007 * 110.99475 * 155.16080 * 16 15 14 37 37 H 1.08999 * 110.56708 * 298.55476 * 20 19 17 38 38 H 1.09001 * 110.56742 * 61.25608 * 20 19 17 39 39 H 1.08997 * 110.52608 * 118.63253 * 21 20 19 40 40 H 1.09000 * 110.52312 * 241.23275 * 21 20 19 41 41 H 1.09003 * 109.88916 * 242.66646 * 25 14 13 42 42 H 1.09001 * 109.88391 * 3.69196 * 25 14 13 43 43 H 1.08003 * 119.87153 * 179.97438 * 26 12 11 44 44 H 1.08001 * 120.12580 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 6 -0.6325 -6.0230 1.5170 14 7 -1.6851 -6.3329 0.5403 15 6 -2.7931 -5.3581 0.6283 16 6 -4.0663 -6.1753 0.2955 17 6 -3.7516 -7.5353 0.9727 18 1 -3.9923 -7.5045 2.0354 19 7 -4.4757 -8.6233 0.3108 20 6 -5.3533 -9.5969 0.9780 21 6 -5.8437 -10.4976 -0.1721 22 8 -5.1981 -9.9424 -1.3544 23 6 -4.4518 -8.8898 -1.0023 24 8 -3.8075 -8.2372 -1.7996 25 6 -2.2303 -7.6847 0.7620 26 6 1.1746 -4.8057 0.2845 27 6 1.8205 -3.6493 -0.0886 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1469 -1.4129 1.5758 30 1 -1.2682 -3.4991 2.2269 31 1 0.0887 -6.8398 1.5455 32 1 -1.0781 -5.8974 2.5038 33 1 -2.8583 -4.9476 1.6359 34 1 -2.6542 -4.5588 -0.0997 35 1 -4.1840 -6.2936 -0.7816 36 1 -4.9515 -5.7157 0.7353 37 1 -4.7928 -10.1800 1.7087 38 1 -6.1926 -9.0915 1.4559 39 1 -5.5273 -11.5282 -0.0119 40 1 -6.9283 -10.4420 -0.2652 41 1 -2.0363 -8.3103 -0.1094 42 1 -1.7729 -8.1286 1.6462 43 1 1.5323 -5.7606 -0.0713 44 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852438551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:52 Heat of formation + Delta-G solvation = -55.772939 kcal Electronic energy + Delta-G solvation = -26049.491857 eV Core-core repulsion = 22352.039208 eV Total energy + Delta-G solvation = -3697.452649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59981 -40.29943 -39.09827 -38.17143 -36.38592 -35.48913 -33.19737 -31.36424 -31.06631 -30.51083 -29.23520 -27.86633 -25.24231 -24.50831 -23.74998 -22.97639 -22.17916 -21.37203 -21.10895 -19.20437 -18.46416 -18.13060 -17.63895 -17.20972 -16.96873 -16.28419 -15.99799 -15.70700 -15.60054 -15.28031 -15.09746 -14.78704 -14.43034 -14.35852 -14.29407 -13.88161 -13.77143 -13.57376 -13.29495 -13.06311 -12.88887 -12.77205 -12.64054 -12.54375 -12.45730 -12.23185 -12.07306 -11.96756 -11.57856 -11.36108 -11.31662 -11.20408 -10.98886 -9.90765 -9.34536 -9.22251 -9.03963 -8.62166 -6.31385 0.96450 1.18366 1.36964 1.41016 1.48529 1.54107 1.65585 2.21206 2.63112 2.69582 3.20410 3.40152 3.51525 3.59170 3.82626 3.85339 4.04257 4.17857 4.22528 4.29175 4.33683 4.43014 4.50976 4.55046 4.64779 4.68575 4.75839 4.78633 4.81606 4.85579 4.93909 5.06067 5.06998 5.16303 5.18548 5.39650 5.50632 5.52848 5.73441 5.97653 6.08712 6.12653 6.26923 6.32173 6.40466 6.42823 6.72865 6.96489 6.99452 7.06913 8.34853 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.002523 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.388466 B =11096.347066 C =11285.043085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.078 3.922 10 C -0.190 4.190 11 C -0.090 4.090 12 C -0.194 4.194 13 C 0.122 3.878 14 N -0.543 5.543 15 C 0.059 3.941 16 C -0.140 4.140 17 C 0.167 3.833 18 H 0.146 0.854 19 N -0.618 5.618 20 C 0.063 3.937 21 C 0.034 3.966 22 O -0.354 6.354 23 C 0.632 3.368 24 O -0.567 6.567 25 C 0.037 3.963 26 C -0.077 4.077 27 C -0.248 4.248 28 H 0.287 0.713 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.328 -18.682 9.290 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.089 0.911 9 C 0.076 3.924 10 C -0.209 4.209 11 C -0.109 4.109 12 C -0.196 4.196 13 C -0.004 4.004 14 N -0.268 5.268 15 C -0.069 4.069 16 C -0.178 4.178 17 C 0.065 3.935 18 H 0.164 0.836 19 N -0.365 5.365 20 C -0.058 4.058 21 C -0.040 4.040 22 O -0.265 6.265 23 C 0.387 3.613 24 O -0.454 6.454 25 C -0.092 4.092 26 C -0.096 4.096 27 C -0.267 4.267 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.124 0.876 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.023 -18.316 8.179 25.062 hybrid contribution 0.284 1.026 0.112 1.070 sum -14.740 -17.290 8.292 24.186 Atomic orbital electron populations 1.69890 1.08975 1.30411 1.35951 1.26755 0.95513 1.04476 0.91262 0.85208 0.79211 0.76030 0.79315 1.18919 1.18738 1.18300 1.19814 0.98275 0.92757 1.42581 0.91058 1.17962 0.92127 0.92860 0.89461 1.21253 1.00262 0.97156 1.02265 1.20746 0.98300 0.92305 0.99564 1.19312 0.99724 0.94136 1.06386 1.20906 0.92880 0.94524 0.92121 1.63433 1.10809 1.01797 1.50780 1.22776 0.89062 0.94883 1.00195 1.23081 0.98076 0.95034 1.01643 1.22217 0.90171 0.83436 0.97713 0.83601 1.48099 1.49517 1.32877 1.06053 1.23230 0.95674 0.90506 0.96438 1.24777 1.00484 0.99557 0.79133 1.87257 1.59805 1.42809 1.36621 1.18794 0.79064 0.79933 0.83535 1.91075 1.46108 1.52200 1.56047 1.23113 0.93825 0.91104 1.01111 1.20638 0.95710 0.96452 0.96805 1.21151 1.04640 0.93490 1.07451 0.90221 0.88201 0.87462 0.90482 0.93220 0.92066 0.93724 0.92317 0.88131 0.86303 0.86321 0.85193 0.85221 0.92931 0.89980 0.87556 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.97 10.97 21.82 0.24 -44.73 16 2 C 0.03 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.98 39.79 29.60 68.60 2.03 41.82 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 7 C -0.50 -28.74 9.05 23.46 0.21 -28.53 16 8 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 10 C -0.19 -10.31 8.70 22.73 0.20 -10.11 16 11 C -0.09 -4.19 8.88 22.22 0.20 -3.99 16 12 C -0.19 -8.39 5.12 -19.67 -0.10 -8.49 16 13 C 0.12 4.05 4.71 85.56 0.40 4.45 16 14 N -0.54 -18.16 5.15 -890.11 -4.59 -22.75 16 15 C 0.06 1.87 5.60 86.77 0.49 2.36 16 16 C -0.14 -3.58 6.54 31.98 0.21 -3.37 16 17 C 0.17 3.22 3.67 46.17 0.17 3.39 16 18 H 0.15 1.60 8.13 -2.39 -0.02 1.58 16 19 N -0.62 -10.99 2.96 -920.81 -2.73 -13.72 16 20 C 0.06 0.33 7.69 86.63 0.67 1.00 16 21 C 0.03 0.21 8.23 72.35 0.60 0.81 16 22 O -0.35 -7.64 11.09 -47.22 -0.52 -8.16 16 23 C 0.63 17.18 7.99 129.91 1.04 18.22 16 24 O -0.57 -22.12 15.08 19.63 0.30 -21.83 16 25 C 0.04 0.95 6.38 86.64 0.55 1.50 16 26 C -0.08 -3.64 9.67 22.22 0.21 -3.42 16 27 C -0.25 -13.12 9.80 22.73 0.22 -12.90 16 28 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 29 H 0.10 5.65 6.17 -2.91 -0.02 5.63 16 30 H 0.11 4.33 7.46 -2.91 -0.02 4.30 16 31 H 0.08 2.36 7.97 -2.39 -0.02 2.34 16 32 H 0.05 1.42 7.79 -2.39 -0.02 1.40 16 33 H 0.06 1.74 6.97 -2.39 -0.02 1.73 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.97 6.19 -2.39 -0.01 1.96 16 36 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.05 1.68 6.81 -2.39 -0.02 1.66 16 42 H 0.08 1.65 7.55 -2.39 -0.02 1.63 16 43 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 44 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -79.05 355.10 1.11 -77.93 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 1.00 Total: 23.92 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 5.38 Total: -32.49 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -7.08 Total: -81.20 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.23 Total: -29.99 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -79.05 1.11 -77.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852438551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.161 kcal (2) G-P(sol) polarization free energy of solvation -79.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds