Wall clock time and date at job start Tue Mar 31 2020 11:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 N 1.46508 * 109.46930 * 270.02005 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00113 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99873 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00053 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47107 * 179.97438 * 19 18 16 21 21 C 1.54630 * 111.03780 * 287.02530 * 20 19 18 22 22 C 1.51102 * 104.72632 * 217.33423 * 21 20 19 23 23 C 1.30528 * 111.10587 * 16.43636 * 22 21 20 24 24 C 1.51105 * 111.09944 * 359.97438 * 23 22 21 25 25 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 26 26 C 1.38101 * 120.07230 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 30 30 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 31 31 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 32 32 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 33 33 H 0.97007 * 119.99977 * 359.97438 * 18 16 15 34 34 H 1.08999 * 109.47365 * 299.99853 * 19 18 16 35 35 H 1.09004 * 109.46894 * 60.00382 * 19 18 16 36 36 H 1.09002 * 110.90953 * 51.03771 * 20 19 18 37 37 H 1.09001 * 110.38970 * 336.14511 * 21 20 19 38 38 H 1.08999 * 110.39036 * 98.52638 * 21 20 19 39 39 H 1.08002 * 124.45414 * 196.46174 * 22 21 20 40 40 H 1.07998 * 124.45104 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.38819 * 224.75026 * 24 23 22 42 42 H 1.09008 * 110.38586 * 102.37868 * 24 23 22 43 43 H 1.07999 * 119.96698 * 179.97438 * 25 13 12 44 44 H 1.07992 * 120.03608 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 8 5.7914 -9.3286 0.0515 18 7 5.5966 -9.2550 2.2628 19 6 6.3756 -10.4863 2.4161 20 6 6.4977 -10.8309 3.9018 21 6 7.4756 -9.8695 4.6161 22 6 8.2074 -10.7371 5.6135 23 6 8.0606 -12.0032 5.3319 24 6 7.2060 -12.1909 4.1000 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0956 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6953 -6.8452 -0.4323 30 1 3.8358 -7.8156 -1.0337 31 1 5.3321 -6.8566 -0.9342 32 1 4.2983 -7.1670 1.6758 33 1 5.2523 -8.7982 3.0463 34 1 5.8739 -11.3010 1.8938 35 1 7.3702 -10.3419 1.9940 36 1 5.5202 -10.8253 4.3840 37 1 8.1766 -9.4399 3.9003 38 1 6.9257 -9.0812 5.1301 39 1 8.7768 -10.3594 6.4500 40 1 8.4926 -12.8105 5.9047 41 1 6.4731 -12.9811 4.2631 42 1 7.8299 -12.4228 3.2368 43 1 5.2812 -4.5470 -0.1945 44 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858182040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:13 Heat of formation + Delta-G solvation = -22.313257 kcal Electronic energy + Delta-G solvation = -24448.193884 eV Core-core repulsion = 20752.192156 eV Total energy + Delta-G solvation = -3696.001728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.14716 -39.23410 -38.87803 -36.90680 -34.81434 -34.29693 -32.37950 -30.77047 -30.27250 -29.43680 -28.56014 -26.06399 -25.23360 -24.12518 -22.05642 -21.01931 -20.66992 -20.54874 -19.18003 -18.33933 -18.06473 -17.09865 -16.67445 -16.37517 -15.66277 -15.19020 -14.78424 -14.68525 -14.46857 -14.14110 -13.82417 -13.65845 -13.61957 -13.30057 -13.12121 -12.79326 -12.70617 -12.53531 -12.13690 -11.95524 -11.69488 -11.56632 -11.55507 -11.40341 -11.26902 -10.98268 -10.77268 -10.69141 -10.48207 -10.18011 -9.43203 -9.30954 -9.27903 -8.92560 -8.74496 -8.28845 -7.33621 -6.53928 -4.12722 1.86861 2.02517 2.12618 2.84583 3.07683 3.09273 3.14553 3.26281 3.89558 4.11043 4.17549 4.32910 4.44913 4.58595 4.86897 4.88404 5.00684 5.13040 5.16365 5.24374 5.30406 5.35626 5.39494 5.44996 5.48990 5.58772 5.63404 5.67078 5.82363 5.87787 5.95001 6.11832 6.13204 6.35169 6.36728 6.48497 6.57929 6.62007 6.79949 6.89263 6.99465 7.15598 7.27647 7.34718 7.71093 7.90974 8.05508 8.64011 8.91596 9.59878 10.63690 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.001966 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.982537 B =14236.591917 C =14945.506069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.196 4.196 12 C -0.054 4.054 13 C -0.214 4.214 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.700 3.300 17 O -0.598 6.598 18 N -0.750 5.750 19 C 0.150 3.850 20 C -0.107 4.107 21 C -0.099 4.099 22 C -0.166 4.166 23 C -0.169 4.169 24 C -0.093 4.093 25 C -0.050 4.050 26 C -0.237 4.237 27 H 0.271 0.729 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.704 -18.857 9.377 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.400 3.600 17 O -0.477 6.477 18 N -0.406 5.406 19 C 0.026 3.974 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.184 4.184 23 C -0.187 4.187 24 C -0.130 4.130 25 C -0.069 4.069 26 C -0.257 4.257 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.231 0.769 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.660 -19.155 8.440 24.463 hybrid contribution 0.201 1.322 0.860 1.590 sum 12.862 -17.833 9.300 23.873 Atomic orbital electron populations 1.70043 1.06004 1.27761 1.45546 1.25325 0.95868 0.98947 0.96373 0.85626 0.79153 0.80207 0.78330 1.19039 1.20056 1.20084 1.21406 0.91897 0.80709 1.52894 0.88858 1.83977 1.34529 1.11569 1.77574 1.19443 0.90322 0.88048 0.91610 1.20217 0.99667 0.90281 1.11342 1.20543 0.92784 0.96826 0.97102 1.19227 0.93556 0.93531 1.15198 1.19823 0.98330 0.92186 0.82166 1.45508 1.57443 1.26006 1.10346 1.16023 0.79399 0.81070 0.83475 1.90909 1.57209 1.61954 1.37594 1.45114 1.59710 1.28798 1.06997 1.21156 0.95911 0.85898 0.94474 1.22304 0.99593 0.95696 0.94968 1.21501 0.97376 0.97774 0.96969 1.23311 1.00428 0.95450 0.99212 1.23267 1.00276 0.97334 0.97847 1.21331 0.98022 0.96756 0.96939 1.20650 0.98398 0.91666 0.96185 1.21164 0.93772 0.98966 1.11769 0.91929 0.86386 0.86941 0.91744 0.91793 0.76924 0.77083 0.91521 0.91551 0.89481 0.90214 0.90994 0.85930 0.85863 0.90785 0.90147 0.87387 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.20 -3.92 9.99 -39.39 -0.39 -4.31 16 12 C -0.05 -0.90 9.69 -39.60 -0.38 -1.28 16 13 C -0.21 -3.41 5.25 -104.58 -0.55 -3.95 16 14 C 0.20 2.81 5.80 -5.19 -0.03 2.77 16 15 N -0.74 -9.25 5.55 -66.41 -0.37 -9.62 16 16 C 0.70 9.42 8.57 -86.92 -0.74 8.68 16 17 O -0.60 -10.46 16.34 5.29 0.09 -10.37 16 18 N -0.75 -7.17 5.51 -65.22 -0.36 -7.53 16 19 C 0.15 1.29 4.99 -4.04 -0.02 1.27 16 20 C -0.11 -0.68 3.16 -88.91 -0.28 -0.96 16 21 C -0.10 -0.64 6.33 -26.83 -0.17 -0.81 16 22 C -0.17 -1.07 10.77 -35.70 -0.38 -1.45 16 23 C -0.17 -1.04 10.78 -35.70 -0.38 -1.43 16 24 C -0.09 -0.56 6.38 -26.84 -0.17 -0.73 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 26 C -0.24 -4.89 9.17 -39.39 -0.36 -5.25 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.40 4.31 8.48 -40.82 -0.35 3.97 16 33 H 0.40 2.83 8.49 -40.82 -0.35 2.48 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.57 7.74 -51.93 -0.40 0.17 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.48 7.89 -51.92 -0.41 0.07 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -31.97 372.59 -9.88 -41.85 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.26 Total: 8.40 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -4.32 Total: -14.66 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.03 Total: -40.99 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.09 Total: -15.17 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.97 -9.88 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858182040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.537 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds