Wall clock time and date at job start Tue Mar 31 2020 11:31:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31556 * 1
3 3 Si 1.86795 * 119.99959 * 2 1
4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1
5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1
6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1
7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3
8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1
9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1
10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2
11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7
12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9
13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10
14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11
15 15 N 1.46508 * 109.46930 * 270.02005 * 14 13 12
16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13
17 17 O 1.21587 * 120.00113 * 0.02562 * 16 15 14
18 18 N 1.34774 * 119.99873 * 180.02562 * 16 15 14
19 19 C 1.46501 * 120.00053 * 180.02562 * 18 16 15
20 20 C 1.53003 * 109.47107 * 179.97438 * 19 18 16
21 21 C 1.54630 * 111.03780 * 287.02530 * 20 19 18
22 22 C 1.51102 * 104.72632 * 217.33423 * 21 20 19
23 23 C 1.30528 * 111.10587 * 16.43636 * 22 21 20
24 24 C 1.51105 * 111.09944 * 359.97438 * 23 22 21
25 25 C 1.38297 * 120.14055 * 359.76875 * 13 12 11
26 26 C 1.38101 * 120.07230 * 359.97438 * 25 13 12
27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3
28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9
29 29 H 1.07996 * 119.96227 * 180.23396 * 12 11 10
30 30 H 1.09003 * 109.47622 * 30.01908 * 14 13 12
31 31 H 1.09004 * 109.47221 * 150.02459 * 14 13 12
32 32 H 0.96994 * 120.00085 * 0.02562 * 15 14 13
33 33 H 0.97007 * 119.99977 * 359.97438 * 18 16 15
34 34 H 1.08999 * 109.47365 * 299.99853 * 19 18 16
35 35 H 1.09004 * 109.46894 * 60.00382 * 19 18 16
36 36 H 1.09002 * 110.90953 * 51.03771 * 20 19 18
37 37 H 1.09001 * 110.38970 * 336.14511 * 21 20 19
38 38 H 1.08999 * 110.39036 * 98.52638 * 21 20 19
39 39 H 1.08002 * 124.45414 * 196.46174 * 22 21 20
40 40 H 1.07998 * 124.45104 * 180.02562 * 23 22 21
41 41 H 1.09000 * 110.38819 * 224.75026 * 24 23 22
42 42 H 1.09008 * 110.38586 * 102.37868 * 24 23 22
43 43 H 1.07999 * 119.96698 * 179.97438 * 25 13 12
44 44 H 1.07992 * 120.03608 * 179.97438 * 26 25 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 3.7095 1.3464 -0.0006
5 1 1.8908 2.3964 -1.2124
6 1 1.8908 2.3964 1.2126
7 6 2.0089 -1.2008 -0.0005
8 1 3.0889 -1.2007 -0.0010
9 8 1.3348 -2.3685 -0.0005
10 6 2.0700 -3.5046 -0.1076
11 6 1.4365 -4.7349 -0.2242
12 6 2.1874 -5.8885 -0.3378
13 6 3.5686 -5.8202 -0.3255
14 6 4.3848 -7.0815 -0.4440
15 7 4.6432 -7.6233 0.8925
16 6 5.3594 -8.7563 1.0334
17 8 5.7914 -9.3286 0.0515
18 7 5.5966 -9.2550 2.2628
19 6 6.3756 -10.4863 2.4161
20 6 6.4977 -10.8309 3.9018
21 6 7.4756 -9.8695 4.6161
22 6 8.2074 -10.7371 5.6135
23 6 8.0606 -12.0032 5.3319
24 6 7.2060 -12.1909 4.1000
25 6 4.2024 -4.5970 -0.2043
26 6 3.4573 -3.4394 -0.0956
27 1 -0.4850 0.8400 0.0004
28 1 0.3579 -4.7892 -0.2301
29 1 1.6953 -6.8452 -0.4323
30 1 3.8358 -7.8156 -1.0337
31 1 5.3321 -6.8566 -0.9342
32 1 4.2983 -7.1670 1.6758
33 1 5.2523 -8.7982 3.0463
34 1 5.8739 -11.3010 1.8938
35 1 7.3702 -10.3419 1.9940
36 1 5.5202 -10.8253 4.3840
37 1 8.1766 -9.4399 3.9003
38 1 6.9257 -9.0812 5.1301
39 1 8.7768 -10.3594 6.4500
40 1 8.4926 -12.8105 5.9047
41 1 6.4731 -12.9811 4.2631
42 1 7.8299 -12.4228 3.2368
43 1 5.2812 -4.5470 -0.1945
44 1 3.9527 -2.4845 -0.0005
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000858182040.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:31:13
Heat of formation + Delta-G solvation = -22.313257 kcal
Electronic energy + Delta-G solvation = -24448.193884 eV
Core-core repulsion = 20752.192156 eV
Total energy + Delta-G solvation = -3696.001728 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.14716 -39.23410 -38.87803 -36.90680 -34.81434 -34.29693 -32.37950 -30.77047
-30.27250 -29.43680 -28.56014 -26.06399 -25.23360 -24.12518 -22.05642 -21.01931
-20.66992 -20.54874 -19.18003 -18.33933 -18.06473 -17.09865 -16.67445 -16.37517
-15.66277 -15.19020 -14.78424 -14.68525 -14.46857 -14.14110 -13.82417 -13.65845
-13.61957 -13.30057 -13.12121 -12.79326 -12.70617 -12.53531 -12.13690 -11.95524
-11.69488 -11.56632 -11.55507 -11.40341 -11.26902 -10.98268 -10.77268 -10.69141
-10.48207 -10.18011 -9.43203 -9.30954 -9.27903 -8.92560 -8.74496 -8.28845
-7.33621 -6.53928 -4.12722 1.86861 2.02517 2.12618 2.84583 3.07683
3.09273 3.14553 3.26281 3.89558 4.11043 4.17549 4.32910 4.44913
4.58595 4.86897 4.88404 5.00684 5.13040 5.16365 5.24374 5.30406
5.35626 5.39494 5.44996 5.48990 5.58772 5.63404 5.67078 5.82363
5.87787 5.95001 6.11832 6.13204 6.35169 6.36728 6.48497 6.57929
6.62007 6.79949 6.89263 6.99465 7.15598 7.27647 7.34718 7.71093
7.90974 8.05508 8.64011 8.91596 9.59878 10.63690
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.021304 B = 0.001966 C = 0.001873
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1313.982537 B =14236.591917 C =14945.506069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.859 5.859
2 C 0.040 3.960
3 Si 0.942 3.058
4 H -0.266 1.266
5 H -0.275 1.275
6 H -0.275 1.275
7 C -0.393 4.393
8 H 0.094 0.906
9 O -0.174 6.174
10 C 0.160 3.840
11 C -0.196 4.196
12 C -0.054 4.054
13 C -0.214 4.214
14 C 0.198 3.802
15 N -0.738 5.738
16 C 0.700 3.300
17 O -0.598 6.598
18 N -0.750 5.750
19 C 0.150 3.850
20 C -0.107 4.107
21 C -0.099 4.099
22 C -0.166 4.166
23 C -0.169 4.169
24 C -0.093 4.093
25 C -0.050 4.050
26 C -0.237 4.237
27 H 0.271 0.729
28 H 0.118 0.882
29 H 0.113 0.887
30 H 0.064 0.936
31 H 0.064 0.936
32 H 0.397 0.603
33 H 0.396 0.604
34 H 0.066 0.934
35 H 0.066 0.934
36 H 0.087 0.913
37 H 0.080 0.920
38 H 0.071 0.929
39 H 0.123 0.877
40 H 0.123 0.877
41 H 0.074 0.926
42 H 0.080 0.920
43 H 0.108 0.892
44 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.704 -18.857 9.377 24.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.494 5.494
2 C -0.165 4.165
3 Si 0.767 3.233
4 H -0.190 1.190
5 H -0.201 1.201
6 H -0.201 1.201
7 C -0.469 4.469
8 H 0.111 0.889
9 O -0.076 6.076
10 C 0.106 3.894
11 C -0.215 4.215
12 C -0.073 4.073
13 C -0.215 4.215
14 C 0.075 3.925
15 N -0.393 5.393
16 C 0.400 3.600
17 O -0.477 6.477
18 N -0.406 5.406
19 C 0.026 3.974
20 C -0.126 4.126
21 C -0.136 4.136
22 C -0.184 4.184
23 C -0.187 4.187
24 C -0.130 4.130
25 C -0.069 4.069
26 C -0.257 4.257
27 H 0.081 0.919
28 H 0.136 0.864
29 H 0.131 0.869
30 H 0.083 0.917
31 H 0.082 0.918
32 H 0.231 0.769
33 H 0.229 0.771
34 H 0.085 0.915
35 H 0.084 0.916
36 H 0.105 0.895
37 H 0.098 0.902
38 H 0.090 0.910
39 H 0.141 0.859
40 H 0.141 0.859
41 H 0.092 0.908
42 H 0.099 0.901
43 H 0.126 0.874
44 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 12.660 -19.155 8.440 24.463
hybrid contribution 0.201 1.322 0.860 1.590
sum 12.862 -17.833 9.300 23.873
Atomic orbital electron populations
1.70043 1.06004 1.27761 1.45546 1.25325 0.95868 0.98947 0.96373
0.85626 0.79153 0.80207 0.78330 1.19039 1.20056 1.20084 1.21406
0.91897 0.80709 1.52894 0.88858 1.83977 1.34529 1.11569 1.77574
1.19443 0.90322 0.88048 0.91610 1.20217 0.99667 0.90281 1.11342
1.20543 0.92784 0.96826 0.97102 1.19227 0.93556 0.93531 1.15198
1.19823 0.98330 0.92186 0.82166 1.45508 1.57443 1.26006 1.10346
1.16023 0.79399 0.81070 0.83475 1.90909 1.57209 1.61954 1.37594
1.45114 1.59710 1.28798 1.06997 1.21156 0.95911 0.85898 0.94474
1.22304 0.99593 0.95696 0.94968 1.21501 0.97376 0.97774 0.96969
1.23311 1.00428 0.95450 0.99212 1.23267 1.00276 0.97334 0.97847
1.21331 0.98022 0.96756 0.96939 1.20650 0.98398 0.91666 0.96185
1.21164 0.93772 0.98966 1.11769 0.91929 0.86386 0.86941 0.91744
0.91793 0.76924 0.77083 0.91521 0.91551 0.89481 0.90214 0.90994
0.85930 0.85863 0.90785 0.90147 0.87387 0.85430
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16
2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16
3 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16
4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16
5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16
6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16
7 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16
8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16
9 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16
10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16
11 C -0.20 -3.92 9.99 -39.39 -0.39 -4.31 16
12 C -0.05 -0.90 9.69 -39.60 -0.38 -1.28 16
13 C -0.21 -3.41 5.25 -104.58 -0.55 -3.95 16
14 C 0.20 2.81 5.80 -5.19 -0.03 2.77 16
15 N -0.74 -9.25 5.55 -66.41 -0.37 -9.62 16
16 C 0.70 9.42 8.57 -86.92 -0.74 8.68 16
17 O -0.60 -10.46 16.34 5.29 0.09 -10.37 16
18 N -0.75 -7.17 5.51 -65.22 -0.36 -7.53 16
19 C 0.15 1.29 4.99 -4.04 -0.02 1.27 16
20 C -0.11 -0.68 3.16 -88.91 -0.28 -0.96 16
21 C -0.10 -0.64 6.33 -26.83 -0.17 -0.81 16
22 C -0.17 -1.07 10.77 -35.70 -0.38 -1.45 16
23 C -0.17 -1.04 10.78 -35.70 -0.38 -1.43 16
24 C -0.09 -0.56 6.38 -26.84 -0.17 -0.73 16
25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16
26 C -0.24 -4.89 9.17 -39.39 -0.36 -5.25 16
27 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16
28 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16
29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16
30 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16
31 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16
32 H 0.40 4.31 8.48 -40.82 -0.35 3.97 16
33 H 0.40 2.83 8.49 -40.82 -0.35 2.48 16
34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
35 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16
36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.08 0.57 7.74 -51.93 -0.40 0.17 16
38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16
40 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16
41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
42 H 0.08 0.48 7.89 -51.92 -0.41 0.07 16
43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16
44 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16
LS Contribution 372.59 15.07 5.61 5.61
Total: -1.00 -31.97 372.59 -9.88 -41.85
By element:
Atomic # 1 Polarization: 14.66 SS G_CDS: -6.26 Total: 8.40 kcal
Atomic # 6 Polarization: -10.34 SS G_CDS: -4.32 Total: -14.66 kcal
Atomic # 7 Polarization: -41.02 SS G_CDS: 0.03 Total: -40.99 kcal
Atomic # 8 Polarization: -15.26 SS G_CDS: 0.09 Total: -15.17 kcal
Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -31.97 -9.88 -41.85 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000858182040.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.537 kcal
(2) G-P(sol) polarization free energy of solvation -31.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.313 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds