Wall clock time and date at job start Tue Mar 31 2020 11:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 N 1.46508 * 109.46930 * 270.02005 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00113 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99873 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00053 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47107 * 179.97438 * 19 18 16 21 21 C 1.54630 * 111.03780 * 287.02530 * 20 19 18 22 22 C 1.51102 * 104.72632 * 217.33423 * 21 20 19 23 23 C 1.30528 * 111.10587 * 16.43636 * 22 21 20 24 24 C 1.51105 * 111.09944 * 359.97438 * 23 22 21 25 25 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 26 26 C 1.38101 * 120.07230 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 30 30 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 31 31 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 32 32 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 33 33 H 0.97007 * 119.99977 * 359.97438 * 18 16 15 34 34 H 1.08999 * 109.47365 * 299.99853 * 19 18 16 35 35 H 1.09004 * 109.46894 * 60.00382 * 19 18 16 36 36 H 1.09002 * 110.90953 * 51.03771 * 20 19 18 37 37 H 1.09001 * 110.38970 * 336.14511 * 21 20 19 38 38 H 1.08999 * 110.39036 * 98.52638 * 21 20 19 39 39 H 1.08002 * 124.45414 * 196.46174 * 22 21 20 40 40 H 1.07998 * 124.45104 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.38819 * 224.75026 * 24 23 22 42 42 H 1.09008 * 110.38586 * 102.37868 * 24 23 22 43 43 H 1.07999 * 119.96698 * 179.97438 * 25 13 12 44 44 H 1.07992 * 120.03608 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 8 5.7914 -9.3286 0.0515 18 7 5.5966 -9.2550 2.2628 19 6 6.3756 -10.4863 2.4161 20 6 6.4977 -10.8309 3.9018 21 6 7.4756 -9.8695 4.6161 22 6 8.2074 -10.7371 5.6135 23 6 8.0606 -12.0032 5.3319 24 6 7.2060 -12.1909 4.1000 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0956 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6953 -6.8452 -0.4323 30 1 3.8358 -7.8156 -1.0337 31 1 5.3321 -6.8566 -0.9342 32 1 4.2983 -7.1670 1.6758 33 1 5.2523 -8.7982 3.0463 34 1 5.8739 -11.3010 1.8938 35 1 7.3702 -10.3419 1.9940 36 1 5.5202 -10.8253 4.3840 37 1 8.1766 -9.4399 3.9003 38 1 6.9257 -9.0812 5.1301 39 1 8.7768 -10.3594 6.4500 40 1 8.4926 -12.8105 5.9047 41 1 6.4731 -12.9811 4.2631 42 1 7.8299 -12.4228 3.2368 43 1 5.2812 -4.5470 -0.1945 44 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858182040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:12 Heat of formation + Delta-G solvation = -42.744639 kcal Electronic energy + Delta-G solvation = -24449.079855 eV Core-core repulsion = 20752.192156 eV Total energy + Delta-G solvation = -3696.887699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18868 -40.71114 -39.63219 -38.50633 -35.76519 -35.49088 -34.26934 -31.88523 -31.73180 -30.51620 -29.04372 -27.68412 -26.52418 -25.15692 -23.63784 -22.20395 -21.93850 -21.21141 -19.88991 -19.70468 -19.26434 -18.80572 -17.59078 -17.01113 -16.69137 -16.37415 -16.28047 -15.96730 -15.92546 -15.54603 -15.25657 -14.90674 -14.86807 -14.37002 -14.31967 -14.04972 -13.64205 -13.60489 -13.26060 -13.03789 -12.99011 -12.58703 -12.53899 -12.34141 -12.23369 -12.13427 -12.08508 -12.02076 -11.83208 -11.35786 -11.19518 -10.81414 -10.33886 -9.81356 -9.75871 -9.69711 -9.01306 -8.48405 -6.16430 0.53516 0.58472 1.36113 1.40371 1.43084 1.53917 1.85490 2.16975 2.20031 2.80989 3.13136 3.43346 3.49992 3.64615 3.71680 3.89857 3.92014 4.04563 4.18374 4.36236 4.40981 4.48091 4.55989 4.57804 4.70095 4.78920 4.82246 4.86637 4.87633 4.92498 5.04980 5.06276 5.14117 5.15158 5.27505 5.34084 5.49270 5.53858 5.56018 5.68490 5.69645 5.76677 6.01815 6.02555 6.04891 6.17144 6.96643 7.13066 7.61948 7.76072 8.74624 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.001966 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.982537 B =14236.591917 C =14945.506069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.205 4.205 12 C -0.043 4.043 13 C -0.180 4.180 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.639 6.639 18 N -0.734 5.734 19 C 0.152 3.848 20 C -0.097 4.097 21 C -0.100 4.100 22 C -0.178 4.178 23 C -0.173 4.173 24 C -0.095 4.095 25 C -0.045 4.045 26 C -0.244 4.244 27 H 0.273 0.727 28 H 0.115 0.885 29 H 0.147 0.853 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.408 0.592 33 H 0.410 0.590 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.139 0.861 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.811 -20.663 10.205 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.386 5.386 16 C 0.399 3.601 17 O -0.521 6.521 18 N -0.390 5.390 19 C 0.028 3.972 20 C -0.116 4.116 21 C -0.137 4.137 22 C -0.195 4.195 23 C -0.190 4.190 24 C -0.133 4.133 25 C -0.063 4.063 26 C -0.263 4.263 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.165 0.835 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.243 0.757 33 H 0.246 0.754 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.156 0.844 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.796 -21.012 9.318 27.336 hybrid contribution -0.306 1.468 0.600 1.615 sum 14.490 -19.543 9.918 26.273 Atomic orbital electron populations 1.70182 1.08011 1.28784 1.48685 1.26582 0.96836 1.02752 0.95847 0.84532 0.78307 0.74905 0.78508 1.17399 1.19520 1.19356 1.21871 0.92574 0.81326 1.53080 0.87884 1.83947 1.36076 1.12670 1.80854 1.19995 0.91622 0.87951 0.93266 1.20450 1.00089 0.90407 1.11431 1.20884 0.93057 0.96985 0.95173 1.19486 0.93443 0.94026 1.11205 1.19702 0.98086 0.91061 0.83127 1.45232 1.57392 1.25920 1.10086 1.16130 0.79139 0.80918 0.83926 1.90890 1.58835 1.63108 1.39245 1.44999 1.58889 1.28788 1.06332 1.21184 0.94967 0.85119 0.95920 1.22223 1.00137 0.95988 0.93276 1.21502 0.97299 0.98002 0.96892 1.23459 1.00838 0.95618 0.99625 1.23453 1.00079 0.97688 0.97826 1.21370 0.98250 0.96721 0.96944 1.20938 0.99798 0.90761 0.94839 1.21243 0.93007 1.00049 1.12001 0.91814 0.86660 0.83502 0.91245 0.91541 0.75672 0.75390 0.92186 0.92664 0.88547 0.91104 0.90304 0.85126 0.84715 0.89873 0.90296 0.84369 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.34 13.67 21.62 0.30 -55.05 16 2 C -0.02 -1.24 5.49 84.84 0.47 -0.78 16 3 Si 1.02 41.89 29.55 68.60 2.03 43.92 16 4 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.41 -23.33 9.49 67.92 0.64 -22.69 16 8 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.37 9.76 -22.72 -0.22 -13.59 16 10 C 0.12 5.80 6.65 22.58 0.15 5.95 16 11 C -0.20 -8.14 9.99 22.39 0.22 -7.92 16 12 C -0.04 -1.30 9.69 22.25 0.22 -1.09 16 13 C -0.18 -5.14 5.25 -19.84 -0.10 -5.25 16 14 C 0.20 5.01 5.80 85.63 0.50 5.50 16 15 N -0.73 -15.75 5.55 -482.28 -2.68 -18.43 16 16 C 0.70 16.93 8.57 179.06 1.53 18.46 16 17 O -0.64 -21.07 16.34 -3.99 -0.07 -21.13 16 18 N -0.73 -12.14 5.51 -478.53 -2.64 -14.78 16 19 C 0.15 2.34 4.99 86.38 0.43 2.77 16 20 C -0.10 -1.03 3.16 -9.69 -0.03 -1.06 16 21 C -0.10 -1.10 6.33 30.53 0.19 -0.91 16 22 C -0.18 -1.94 10.77 26.26 0.28 -1.66 16 23 C -0.17 -1.78 10.78 26.26 0.28 -1.50 16 24 C -0.10 -0.96 6.38 30.53 0.19 -0.76 16 25 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 26 C -0.24 -9.96 9.17 22.39 0.21 -9.76 16 27 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 31 H 0.07 1.68 8.08 -2.39 -0.02 1.67 16 32 H 0.41 7.28 8.48 -92.71 -0.79 6.49 16 33 H 0.41 4.57 8.49 -92.70 -0.79 3.78 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 1.00 7.92 -2.38 -0.02 0.98 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.91 7.74 -2.39 -0.02 0.89 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 0.82 7.89 -2.38 -0.02 0.81 16 43 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.12 5.02 5.64 -2.91 -0.02 5.01 16 Total: -1.00 -73.25 372.59 1.58 -71.67 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.54 Total: 29.28 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 5.40 Total: -21.89 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -5.02 Total: -88.26 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.29 Total: -34.72 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -73.25 1.58 -71.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858182040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.925 kcal (2) G-P(sol) polarization free energy of solvation -73.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds